RNA–Protein interactions for RNA: ENST00000357604.9

UPF2-202, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,193 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-202ENST00000357604 CCDC47Q96A33 483 aaKnown RBP10.68□□□□□ -0.7
UPF2-202ENST00000357604 ZSCAN10Q96SZ4 725 aaPredicted RBP10.68□□□□□ -0.7
UPF2-202ENST00000357604 EHD4Q9H223 541 aa10.68□□□□□ -0.7
UPF2-202ENST00000357604 CLIP2Q9UDT6 1046 aa10.68□□□□□ -0.7
UPF2-202ENST00000357604 FEM1BQ9UK73 627 aa10.68□□□□□ -0.7
UPF2-202ENST00000357604 FLT1P17948 1338 aa10.67□□□□□ -0.7
UPF2-202ENST00000357604 KCNA3P22001 575 aa10.67□□□□□ -0.7
UPF2-202ENST00000357604 ALX1Q15699 326 aa10.67□□□□□ -0.7
UPF2-202ENST00000357604 MXD3Q9BW11 206 aa10.67□□□□□ -0.7
UPF2-202ENST00000357604 CDK8P49336 464 aa10.67□□□□□ -0.7
UPF2-202ENST00000357604 HMGN5P82970 282 aaKnown RBP10.67□□□□□ -0.7
UPF2-202ENST00000357604 MAP2K1Q02750 393 aaPredicted RBP10.67□□□□□ -0.7
UPF2-202ENST00000357604 SBK1Q52WX2 424 aa10.67□□□□□ -0.7
UPF2-202ENST00000357604 SIRT2Q8IXJ6 389 aa10.67□□□□□ -0.7
UPF2-202ENST00000357604 ZHX2Q9Y6X8 837 aa10.67□□□□□ -0.7
UPF2-202ENST00000357604 SGSM2O43147 1006 aa10.67□□□□□ -0.7
UPF2-202ENST00000357604 SF3A1Q15459 793 aaKnown RBP10.67□□□□□ -0.7
UPF2-202ENST00000357604 ASPRV1Q53RT3 343 aa10.67□□□□□ -0.7
UPF2-202ENST00000357604 CCDC129Q6ZRS4 1044 aa10.67□□□□□ -0.7
UPF2-202ENST00000357604 ERO1BQ86YB8 467 aa10.67□□□□□ -0.7
UPF2-202ENST00000357604 COL24A1Q17RW2 1714 aa10.67□□□□□ -0.7
UPF2-202ENST00000357604 USP17L15C9J2P7 530 aa10.67□□□□□ -0.7
UPF2-202ENST00000357604 USP17L13C9JLJ4 530 aa10.67□□□□□ -0.7
UPF2-202ENST00000357604 USP17L11C9JVI0 530 aa10.67□□□□□ -0.7
UPF2-202ENST00000357604 USP17L18D6R9N7 530 aa10.67□□□□□ -0.7
UPF2-202ENST00000357604 USP17L22D6RA61 530 aa10.67□□□□□ -0.7
UPF2-202ENST00000357604 USP17L17D6RBQ6 530 aa10.67□□□□□ -0.7
UPF2-202ENST00000357604 USP17L19D6RCP7 530 aa10.67□□□□□ -0.7
UPF2-202ENST00000357604 USP17L20D6RJB6 530 aa10.67□□□□□ -0.7
UPF2-202ENST00000357604 BAG4O95429 457 aaKnown RBP10.67□□□□□ -0.7
UPF2-202ENST00000357604 USP17L24Q0WX57 530 aa10.67□□□□□ -0.7
UPF2-202ENST00000357604 C7orf43Q8WVR3 580 aa10.67□□□□□ -0.7
UPF2-202ENST00000357604 FAM163AQ96GL9 167 aaPredicted RBP10.67□□□□□ -0.7
UPF2-202ENST00000357604 ANTXR1Q9H6X2 564 aa10.67□□□□□ -0.7
UPF2-202ENST00000357604 WNT10BO00744 389 aa10.66□□□□□ -0.7
UPF2-202ENST00000357604 GPATCH4Q5T3I0 446 aaKnown RBP10.66□□□□□ -0.7
UPF2-202ENST00000357604 DHX32Q7L7V1 743 aaKnown RBP10.66□□□□□ -0.7
UPF2-202ENST00000357604 OTUD5Q96G74 571 aa10.66□□□□□ -0.7
UPF2-202ENST00000357604 C6orf50Q9HD87 102 aa10.66□□□□□ -0.7
UPF2-202ENST00000357604 ZEB2O60315 1214 aa10.66□□□□□ -0.7
UPF2-202ENST00000357604 KDM4AO75164 1064 aa10.66□□□□□ -0.7
UPF2-202ENST00000357604 NPM3O75607 178 aaKnown RBP10.66□□□□□ -0.7
UPF2-202ENST00000357604 MAP1SQ66K74 1059 aaPredicted RBP10.66□□□□□ -0.7
UPF2-202ENST00000357604 PI4K2BQ8TCG2 481 aa10.66□□□□□ -0.7
UPF2-202ENST00000357604 SPC25Q9HBM1 224 aa10.66□□□□□ -0.7
UPF2-202ENST00000357604 NDUFB9Q9Y6M9 179 aa10.66□□□□□ -0.7
UPF2-202ENST00000357604 TRIM75PA6NK02 468 aa10.66□□□□□ -0.7
UPF2-202ENST00000357604 FLOT1O75955 427 aa10.66□□□□□ -0.7
UPF2-202ENST00000357604 HSPD1P10809 573 aaKnown RBP10.66□□□□□ -0.7
UPF2-202ENST00000357604 SLFN13Q68D06 897 aa10.66□□□□□ -0.7
UPF2-202ENST00000357604 PI16Q6UXB8 463 aa10.66□□□□□ -0.7
UPF2-202ENST00000357604 TTC14Q96N46 770 aa10.66□□□□□ -0.7
UPF2-202ENST00000357604 FBXO40Q9UH90 709 aa10.66□□□□□ -0.7
UPF2-202ENST00000357604 CEP131Q9UPN4 1083 aa10.66□□□□□ -0.7
UPF2-202ENST00000357604 MRPL11Q9Y3B7 192 aaKnown RBP10.66□□□□□ -0.7
UPF2-202ENST00000357604 GDF11O95390 407 aa10.66□□□□□ -0.7
UPF2-202ENST00000357604 KCTD2Q14681 263 aa10.66□□□□□ -0.7
UPF2-202ENST00000357604 RGMBQ6NW40 437 aa10.66□□□□□ -0.7
UPF2-202ENST00000357604 MB21D1Q8N884 522 aa10.66□□□□□ -0.7
UPF2-202ENST00000357604 OTUD7AQ8TE49 926 aaPredicted RBP10.66□□□□□ -0.7
UPF2-202ENST00000357604 FAM227BQ96M60 508 aa10.66□□□□□ -0.7
UPF2-202ENST00000357604 STRBPQ96SI9 672 aaKnown RBP10.66□□□□□ -0.7
UPF2-202ENST00000357604 PAGR1Q9BTK6 254 aa10.66□□□□□ -0.7
UPF2-202ENST00000357604 IDI2Q9BXS1 227 aa10.66□□□□□ -0.7
UPF2-202ENST00000357604 LAMB2P55268 1798 aa10.66□□□□□ -0.7
UPF2-202ENST00000357604 NOGQ13253 232 aa10.65□□□□□ -0.7
UPF2-202ENST00000357604 ZYXQ15942 572 aaKnown RBP10.65□□□□□ -0.7
UPF2-202ENST00000357604 TKFCQ3LXA3 575 aa10.65□□□□□ -0.7
UPF2-202ENST00000357604 ZNF280CQ8ND82 737 aa10.65□□□□□ -0.7
UPF2-202ENST00000357604 LPAR1Q92633 364 aa10.65□□□□□ -0.7
UPF2-202ENST00000357604 TNPO1Q92973 898 aaKnown RBP10.65□□□□□ -0.7
UPF2-202ENST00000357604 ZNF396Q96N95 335 aaPredicted RBP10.65□□□□□ -0.7
UPF2-202ENST00000357604 GLIS2Q9BZE0 524 aaPredicted RBP10.65□□□□□ -0.7
UPF2-202ENST00000357604 hCG_1984214I3L0E3 225 aa10.65□□□□□ -0.7
UPF2-202ENST00000357604 CA12O43570 354 aa10.65□□□□□ -0.7
UPF2-202ENST00000357604 ZNF713Q8N859 430 aaPredicted RBP10.65□□□□□ -0.7
UPF2-202ENST00000357604 NLRP5P59047 1200 aa10.65□□□□□ -0.7
UPF2-202ENST00000357604 TRMT44Q8IYL2 757 aaKnown RBP10.65□□□□□ -0.7
UPF2-202ENST00000357604 ERO1AQ96HE7 468 aa10.65□□□□□ -0.7
UPF2-202ENST00000357604 ZMYM6O95789 1325 aa10.65□□□□□ -0.7
UPF2-202ENST00000357604 CCL15-CCL14A0A0B4J2E2 113 aa10.65□□□□□ -0.71
UPF2-202ENST00000357604 SNAP23O00161 211 aa10.65□□□□□ -0.71
UPF2-202ENST00000357604 SLC27A2O14975 620 aa10.65□□□□□ -0.71
UPF2-202ENST00000357604 FMNL1O95466 1100 aaPredicted RBP10.65□□□□□ -0.71
UPF2-202ENST00000357604 CACNB3P54284 484 aa10.65□□□□□ -0.71
UPF2-202ENST00000357604 CCL15Q16663 113 aa10.65□□□□□ -0.71
UPF2-202ENST00000357604 WWC2Q6AWC2 1192 aa10.65□□□□□ -0.71
UPF2-202ENST00000357604 DDX11Q96FC9 970 aa10.65□□□□□ -0.71
UPF2-202ENST00000357604 PRMT6Q96LA8 375 aaPredicted RBP10.65□□□□□ -0.71
UPF2-202ENST00000357604 DCP1AQ9NPI6 582 aaPredicted RBP10.65□□□□□ -0.71
UPF2-202ENST00000357604 PPIL2Q13356 520 aa10.64□□□□□ -0.71
UPF2-202ENST00000357604 TAF1CQ15572 869 aaPredicted RBP10.64□□□□□ -0.71
UPF2-202ENST00000357604 GAKO14976 1311 aa10.64□□□□□ -0.71
UPF2-202ENST00000357604 CXCL11O14625 94 aa10.64□□□□□ -0.71
UPF2-202ENST00000357604 TXLNAP40222 546 aa10.64□□□□□ -0.71
UPF2-202ENST00000357604 MKRN3Q13064 507 aaKnown RBP10.64□□□□□ -0.71
UPF2-202ENST00000357604 NBPF9Q3BBW0 867 aa10.64□□□□□ -0.71
UPF2-202ENST00000357604 PUS7LQ9H0K6 701 aaKnown RBP10.64□□□□□ -0.71
UPF2-202ENST00000357604 VAT1LQ9HCJ6 419 aa10.64□□□□□ -0.71
UPF2-202ENST00000357604 GPCPD1Q9NPB8 672 aa10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms