RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 LONRF2Q1L5Z9 754 aa21.75■■□□□ 1.07
CCDC88B-202ENST00000356786 CCDC84Q86UT8 332 aaPredicted RBP21.75■■□□□ 1.07
CCDC88B-202ENST00000356786 TRMT2AQ8IZ69 625 aaKnown RBP21.75■■□□□ 1.07
CCDC88B-202ENST00000356786 TSKSQ9UJT2 592 aa21.75■■□□□ 1.07
CCDC88B-202ENST00000356786 GCKP35557 465 aa21.75■■□□□ 1.07
CCDC88B-202ENST00000356786 ASIC2Q16515 512 aa21.75■■□□□ 1.07
CCDC88B-202ENST00000356786 TAOK1Q7L7X3 1001 aa21.75■■□□□ 1.07
CCDC88B-202ENST00000356786 E7EWF7 191 aa21.75■■□□□ 1.07
CCDC88B-202ENST00000356786 EXOC5O00471 708 aa21.75■■□□□ 1.07
CCDC88B-202ENST00000356786 TNFAIP3P21580 790 aa21.75■■□□□ 1.07
CCDC88B-202ENST00000356786 RBM6P78332 1123 aaKnown RBP21.75■■□□□ 1.07
CCDC88B-202ENST00000356786 TYW1BQ6NUM6 668 aa21.75■■□□□ 1.07
CCDC88B-202ENST00000356786 FAM207AQ9NSI2 230 aaPredicted RBP21.75■■□□□ 1.07
CCDC88B-202ENST00000356786 CIB2O75838 187 aa21.75■■□□□ 1.07
CCDC88B-202ENST00000356786 MTMR3Q13615 1198 aa21.75■■□□□ 1.07
CCDC88B-202ENST00000356786 FMNL3Q8IVF7 1028 aa21.75■■□□□ 1.07
CCDC88B-202ENST00000356786 BLZF1Q9H2G9 400 aa21.75■■□□□ 1.07
CCDC88B-202ENST00000356786 FAM204AQ9H8W3 233 aa21.75■■□□□ 1.07
CCDC88B-202ENST00000356786 EDC4Q6P2E9 1401 aaKnown RBP21.75■■□□□ 1.07
CCDC88B-202ENST00000356786 CFAP74Q9C0B2 1584 aa21.75■■□□□ 1.07
CCDC88B-202ENST00000356786 WDR66Q8TBY9 1149 aa21.74■■□□□ 1.07
CCDC88B-202ENST00000356786 MRRFQ96E11 262 aaKnown RBP21.74■■□□□ 1.07
CCDC88B-202ENST00000356786 EPB41L3Q9Y2J2 1087 aaPredicted RBP21.74■■□□□ 1.07
CCDC88B-202ENST00000356786 STX10O60499 249 aa21.74■■□□□ 1.07
CCDC88B-202ENST00000356786 SMARCC2Q8TAQ2 1214 aa21.74■■□□□ 1.07
CCDC88B-202ENST00000356786 MCUR1Q96AQ8 359 aa21.74■■□□□ 1.07
CCDC88B-202ENST00000356786 KDM5DQ9BY66 1539 aa21.74■■□□□ 1.07
CCDC88B-202ENST00000356786 UGGT1Q9NYU2 1555 aa21.74■■□□□ 1.07
CCDC88B-202ENST00000356786 CMA1P23946 247 aa21.74■■□□□ 1.07
CCDC88B-202ENST00000356786 ZNF131P52739 623 aa21.74■■□□□ 1.07
CCDC88B-202ENST00000356786 RASEFQ8IZ41 740 aa21.74■■□□□ 1.07
CCDC88B-202ENST00000356786 SUCLG2Q96I99 432 aa21.74■■□□□ 1.07
CCDC88B-202ENST00000356786 CDC23Q9UJX2 597 aa21.74■■□□□ 1.07
CCDC88B-202ENST00000356786 CETN3O15182 167 aa21.73■■□□□ 1.07
CCDC88B-202ENST00000356786 KLHL30Q0D2K2 578 aa21.73■■□□□ 1.07
CCDC88B-202ENST00000356786 UAP1Q16222 522 aaPredicted RBP21.73■■□□□ 1.07
CCDC88B-202ENST00000356786 FYB2Q5VWT5 728 aa21.73■■□□□ 1.07
CCDC88B-202ENST00000356786 C2CD5Q86YS7 1000 aa21.73■■□□□ 1.07
CCDC88B-202ENST00000356786 C19orf44Q9H6X5 657 aa21.73■■□□□ 1.07
CCDC88B-202ENST00000356786 PPP1R1BQ9UD71 204 aaPredicted RBP21.73■■□□□ 1.07
CCDC88B-202ENST00000356786 NDUFA8P51970 172 aa21.73■■□□□ 1.07
CCDC88B-202ENST00000356786 SRGAP1Q7Z6B7 1085 aa21.73■■□□□ 1.07
CCDC88B-202ENST00000356786 BANK1Q8NDB2 785 aa21.73■■□□□ 1.07
CCDC88B-202ENST00000356786 TRIM58Q8NG06 486 aa21.73■■□□□ 1.07
CCDC88B-202ENST00000356786 CCDC110Q8TBZ0 833 aa21.73■■□□□ 1.07
CCDC88B-202ENST00000356786 IMPG2Q9BZV3 1241 aa21.73■■□□□ 1.07
CCDC88B-202ENST00000356786 HAUS4Q9H6D7 363 aa21.73■■□□□ 1.07
CCDC88B-202ENST00000356786 KIF24Q5T7B8 1368 aa21.73■■□□□ 1.07
CCDC88B-202ENST00000356786 SPDYE3A6NKU9 549 aa21.73■■□□□ 1.07
CCDC88B-202ENST00000356786 CTNNA1P35221 906 aaKnown RBP21.73■■□□□ 1.07
CCDC88B-202ENST00000356786 INF2Q27J81 1249 aa21.73■■□□□ 1.07
CCDC88B-202ENST00000356786 A0A0D9SFI3 127 aa21.73■■□□□ 1.07
CCDC88B-202ENST00000356786 GOLGA8KD6RF30 607 aa21.73■■□□□ 1.07
CCDC88B-202ENST00000356786 SEPT6Q14141 434 aa21.73■■□□□ 1.07
CCDC88B-202ENST00000356786 ZNF365Q70YC5 407 aa21.73■■□□□ 1.07
CCDC88B-202ENST00000356786 CERS3Q8IU89 383 aa21.73■■□□□ 1.07
CCDC88B-202ENST00000356786 MIPOL1Q8TD10 442 aa21.73■■□□□ 1.07
CCDC88B-202ENST00000356786 PLS1Q14651 629 aa21.72■■□□□ 1.07
CCDC88B-202ENST00000356786 RRAGAQ7L523 313 aa21.72■■□□□ 1.07
CCDC88B-202ENST00000356786 CCDC170Q8IYT3 715 aa21.72■■□□□ 1.07
CCDC88B-202ENST00000356786 HINFPQ9BQA5 517 aa21.72■■□□□ 1.07
CCDC88B-202ENST00000356786 MLH3Q9UHC1 1453 aa21.72■■□□□ 1.07
CCDC88B-202ENST00000356786 IRS4O14654 1257 aaPredicted RBP21.72■■□□□ 1.07
CCDC88B-202ENST00000356786 CLGNO14967 610 aa21.72■■□□□ 1.07
CCDC88B-202ENST00000356786 CUL4AQ13619 759 aa21.72■■□□□ 1.07
CCDC88B-202ENST00000356786 SSH3Q8TE77 659 aa21.72■■□□□ 1.07
CCDC88B-202ENST00000356786 NSFL1CQ9UNZ2 370 aaKnown RBP21.72■■□□□ 1.07
CCDC88B-202ENST00000356786 UTP18Q9Y5J1 556 aaKnown RBP eCLIP21.72■■□□□ 1.07
CCDC88B-202ENST00000356786 TMEM2Q9UHN6 1383 aa21.72■■□□□ 1.07
CCDC88B-202ENST00000356786 EPB41P11171 864 aaKnown RBP21.72■■□□□ 1.07
CCDC88B-202ENST00000356786 VCXQ9H320 206 aa21.72■■□□□ 1.07
CCDC88B-202ENST00000356786 NLRC4Q9NPP4 1024 aa21.72■■□□□ 1.07
CCDC88B-202ENST00000356786 ASIC3Q9UHC3 531 aa21.72■■□□□ 1.07
CCDC88B-202ENST00000356786 PSMC4P43686 418 aa21.72■■□□□ 1.07
CCDC88B-202ENST00000356786 SPATS2Q86XZ4 545 aaKnown RBP21.72■■□□□ 1.07
CCDC88B-202ENST00000356786 USP44Q9H0E7 712 aa21.72■■□□□ 1.07
CCDC88B-202ENST00000356786 PRDM1O75626 825 aa21.71■■□□□ 1.07
CCDC88B-202ENST00000356786 PEX26Q7Z412 305 aa21.71■■□□□ 1.07
CCDC88B-202ENST00000356786 TXNDC16Q9P2K2 825 aa21.71■■□□□ 1.07
CCDC88B-202ENST00000356786 STK38LQ9Y2H1 464 aa21.71■■□□□ 1.07
CCDC88B-202ENST00000356786 RIPOR2Q9Y4F9 1068 aa21.71■■□□□ 1.07
CCDC88B-202ENST00000356786 GCP02774 474 aa21.71■■□□□ 1.07
CCDC88B-202ENST00000356786 CDC25BP30305 580 aa21.71■■□□□ 1.07
CCDC88B-202ENST00000356786 ZNF274Q96GC6 653 aaPredicted RBP21.71■■□□□ 1.07
CCDC88B-202ENST00000356786 KDM5CP41229 1560 aa21.71■■□□□ 1.07
CCDC88B-202ENST00000356786 ZCRB1Q8TBF4 217 aaKnown RBP21.71■■□□□ 1.07
CCDC88B-202ENST00000356786 ARMT1Q9H993 441 aa21.71■■□□□ 1.07
CCDC88B-202ENST00000356786 ANAPC4Q9UJX5 808 aa21.71■■□□□ 1.07
CCDC88B-202ENST00000356786 HOXC9P31274 260 aa21.7■■□□□ 1.07
CCDC88B-202ENST00000356786 CLCN6P51797 869 aa21.7■■□□□ 1.07
CCDC88B-202ENST00000356786 TRAF1Q13077 416 aa21.7■■□□□ 1.07
CCDC88B-202ENST00000356786 SBDSQ9Y3A5 250 aaKnown RBP eCLIP21.7■■□□□ 1.07
CCDC88B-202ENST00000356786 TXKP42681 527 aa21.7■■□□□ 1.06
CCDC88B-202ENST00000356786 MAP7D1Q3KQU3 841 aa21.7■■□□□ 1.06
CCDC88B-202ENST00000356786 AKNAD1Q5T1N1 836 aa21.7■■□□□ 1.06
CCDC88B-202ENST00000356786 FAN1Q9Y2M0 1017 aa21.7■■□□□ 1.06
CCDC88B-202ENST00000356786 CDC42BPAQ5VT25 1732 aa21.7■■□□□ 1.06
CCDC88B-202ENST00000356786 RNMTO43148 476 aaKnown RBP21.7■■□□□ 1.06
CCDC88B-202ENST00000356786 HOXB7P09629 217 aa21.7■■□□□ 1.06
CCDC88B-202ENST00000356786 GKAP1Q5VSY0 366 aaPredicted RBP21.7■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms