RNA–Protein interactions for RNA: ENST00000355497.9

LMX1B-201, Transcript of LIM homeobox transcription factor 1 beta, humanhuman

TSL 1 (best) BASIC

Gene LMX1B, Length 5,809 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1B-201ENST00000355497 MAN1A1P33908 653 aa16.5■□□□□ 0.23
LMX1B-201ENST00000355497 SLC12A2P55011 1212 aa16.5■□□□□ 0.23
LMX1B-201ENST00000355497 NELFBQ8WX92 580 aa16.5■□□□□ 0.23
LMX1B-201ENST00000355497 RAB17Q9H0T7 212 aa16.49■□□□□ 0.23
LMX1B-201ENST00000355497 V9GY48 417 aaPredicted RBP16.49■□□□□ 0.23
LMX1B-201ENST00000355497 MAP3K21Q5TCX8 1036 aa16.49■□□□□ 0.23
LMX1B-201ENST00000355497 SNX29Q8TEQ0 813 aa16.49■□□□□ 0.23
LMX1B-201ENST00000355497 WHAMMQ8TF30 809 aa16.49■□□□□ 0.23
LMX1B-201ENST00000355497 NOD1Q9Y239 953 aa16.49■□□□□ 0.23
LMX1B-201ENST00000355497 RPRD2Q5VT52 1461 aaKnown RBP16.49■□□□□ 0.23
LMX1B-201ENST00000355497 MSH6P52701 1360 aa16.49■□□□□ 0.23
LMX1B-201ENST00000355497 TROVE2P10155 538 aaKnown RBP eCLIP16.49■□□□□ 0.23
LMX1B-201ENST00000355497 ADCY7P51828 1080 aa16.49■□□□□ 0.23
LMX1B-201ENST00000355497 ARMT1Q9H993 441 aa16.49■□□□□ 0.23
LMX1B-201ENST00000355497 DDB1Q16531 1140 aa16.49■□□□□ 0.23
LMX1B-201ENST00000355497 HVCN1Q96D96 273 aa16.49■□□□□ 0.23
LMX1B-201ENST00000355497 PICK1Q9NRD5 415 aa16.49■□□□□ 0.23
LMX1B-201ENST00000355497 PLCH2O75038 1416 aa16.49■□□□□ 0.23
LMX1B-201ENST00000355497 TOPBP1Q92547 1522 aa16.48■□□□□ 0.23
LMX1B-201ENST00000355497 IRX4P78413 519 aa16.48■□□□□ 0.23
LMX1B-201ENST00000355497 MYCT1Q8N699 235 aa16.48■□□□□ 0.23
LMX1B-201ENST00000355497 MYRIPQ8NFW9 859 aa16.48■□□□□ 0.23
LMX1B-201ENST00000355497 LRWD1Q9UFC0 647 aa16.48■□□□□ 0.23
LMX1B-201ENST00000355497 BRDTQ58F21 947 aaPredicted RBP16.48■□□□□ 0.23
LMX1B-201ENST00000355497 KRT25Q7Z3Z0 450 aa16.48■□□□□ 0.23
LMX1B-201ENST00000355497 GBP5Q96PP8 586 aa16.48■□□□□ 0.23
LMX1B-201ENST00000355497 NUCKS1Q9H1E3 243 aaKnown RBP16.48■□□□□ 0.23
LMX1B-201ENST00000355497 DNM3Q9UQ16 869 aa16.48■□□□□ 0.23
LMX1B-201ENST00000355497 MYO1AQ9UBC5 1043 aa16.48■□□□□ 0.23
LMX1B-201ENST00000355497 NOP56O00567 594 aaKnown RBP16.48■□□□□ 0.23
LMX1B-201ENST00000355497 EXOC3O60645 756 aa16.48■□□□□ 0.23
LMX1B-201ENST00000355497 POSTNQ15063 836 aa16.48■□□□□ 0.23
LMX1B-201ENST00000355497 LONRF2Q1L5Z9 754 aa16.48■□□□□ 0.23
LMX1B-201ENST00000355497 NFATC2IPQ8NCF5 419 aa16.48■□□□□ 0.23
LMX1B-201ENST00000355497 MGARPQ8TDB4 240 aa16.48■□□□□ 0.23
LMX1B-201ENST00000355497 PSMB7Q99436 277 aa16.48■□□□□ 0.23
LMX1B-201ENST00000355497 IL2RBP14784 551 aa16.48■□□□□ 0.23
LMX1B-201ENST00000355497 PPARDQ03181 441 aa16.48■□□□□ 0.23
LMX1B-201ENST00000355497 NONOQ15233 471 aaKnown RBP eCLIP16.48■□□□□ 0.23
LMX1B-201ENST00000355497 PRR16Q569H4 304 aa16.48■□□□□ 0.23
LMX1B-201ENST00000355497 MAEAQ7L5Y9 396 aa16.48■□□□□ 0.23
LMX1B-201ENST00000355497 DIS3L2Q8IYB7 885 aaKnown RBP16.48■□□□□ 0.23
LMX1B-201ENST00000355497 IQCDQ96DY2 449 aa16.48■□□□□ 0.23
LMX1B-201ENST00000355497 NACA2Q9H009 215 aa16.48■□□□□ 0.23
LMX1B-201ENST00000355497 KIAA0586Q9BVV6 1533 aa16.47■□□□□ 0.23
LMX1B-201ENST00000355497 WDR46O15213 610 aaKnown RBP16.47■□□□□ 0.23
LMX1B-201ENST00000355497 ZNF202O95125 648 aa16.47■□□□□ 0.23
LMX1B-201ENST00000355497 MYCLP12524 364 aaPredicted RBP16.47■□□□□ 0.23
LMX1B-201ENST00000355497 STX2P32856 288 aa16.47■□□□□ 0.23
LMX1B-201ENST00000355497 MUM1Q2TAK8 710 aa16.47■□□□□ 0.23
LMX1B-201ENST00000355497 KRT71Q3SY84 523 aa16.47■□□□□ 0.23
LMX1B-201ENST00000355497 HERC4Q5GLZ8 1057 aaPredicted RBP16.47■□□□□ 0.23
LMX1B-201ENST00000355497 ANGEL1Q9UNK9 670 aaKnown RBP16.47■□□□□ 0.23
LMX1B-201ENST00000355497 IQGAP2Q13576 1575 aa16.47■□□□□ 0.23
LMX1B-201ENST00000355497 ANKRD42Q8N9B4 389 aa16.47■□□□□ 0.23
LMX1B-201ENST00000355497 DACT3Q96B18 629 aaPredicted RBP16.47■□□□□ 0.23
LMX1B-201ENST00000355497 SLF1Q9BQI6 1058 aa16.47■□□□□ 0.23
LMX1B-201ENST00000355497 STK38LQ9Y2H1 464 aa16.47■□□□□ 0.23
LMX1B-201ENST00000355497 DDX39AO00148 427 aaKnown RBP16.47■□□□□ 0.23
LMX1B-201ENST00000355497 MGEA5O60502 916 aa16.47■□□□□ 0.23
LMX1B-201ENST00000355497 GCNT3O95395 438 aa16.47■□□□□ 0.23
LMX1B-201ENST00000355497 CEBPAP49715 358 aaPredicted RBP16.47■□□□□ 0.23
LMX1B-201ENST00000355497 ZBTB40Q9NUA8 1239 aa16.47■□□□□ 0.23
LMX1B-201ENST00000355497 TBC1D7Q9P0N9 293 aa16.47■□□□□ 0.23
LMX1B-201ENST00000355497 EIF6P56537 245 aaKnown RBP16.47■□□□□ 0.23
LMX1B-201ENST00000355497 MTX1Q13505 466 aa16.47■□□□□ 0.23
LMX1B-201ENST00000355497 DYMQ7RTS9 669 aa16.47■□□□□ 0.23
LMX1B-201ENST00000355497 PPP4R1Q8TF05 950 aa16.47■□□□□ 0.23
LMX1B-201ENST00000355497 NCAPGQ9BPX3 1015 aa16.47■□□□□ 0.23
LMX1B-201ENST00000355497 BAIAP2L1Q9UHR4 511 aa16.46■□□□□ 0.23
LMX1B-201ENST00000355497 MRPL44Q9H9J2 332 aaKnown RBP16.46■□□□□ 0.23
LMX1B-201ENST00000355497 DMRT2Q9Y5R5 561 aa16.46■□□□□ 0.23
LMX1B-201ENST00000355497 RGS16O15492 202 aaPredicted RBP16.46■□□□□ 0.23
LMX1B-201ENST00000355497 VAMP4O75379 141 aa16.46■□□□□ 0.23
LMX1B-201ENST00000355497 KRT19P08727 400 aa16.46■□□□□ 0.23
LMX1B-201ENST00000355497 PRPF6O94906 941 aaKnown RBP16.46■□□□□ 0.23
LMX1B-201ENST00000355497 CALCRLQ16602 461 aa16.46■□□□□ 0.23
LMX1B-201ENST00000355497 TSPYL2Q9H2G4 693 aaPredicted RBP16.46■□□□□ 0.23
LMX1B-201ENST00000355497 GPHNQ9NQX3 736 aaPredicted RBP16.46■□□□□ 0.23
LMX1B-201ENST00000355497 BIN2Q9UBW5 565 aaPredicted RBP16.46■□□□□ 0.23
LMX1B-201ENST00000355497 SNX14Q9Y5W7 946 aa16.46■□□□□ 0.23
LMX1B-201ENST00000355497 CD19P15391 556 aa16.46■□□□□ 0.22
LMX1B-201ENST00000355497 PUM3Q15397 648 aaKnown RBP16.46■□□□□ 0.22
LMX1B-201ENST00000355497 PHLDB3Q6NSJ2 640 aa16.46■□□□□ 0.22
LMX1B-201ENST00000355497 CARD10Q9BWT7 1032 aa16.46■□□□□ 0.22
LMX1B-201ENST00000355497 TNNQ9UQP3 1299 aa16.46■□□□□ 0.22
LMX1B-201ENST00000355497 NFE2L3Q9Y4A8 694 aa16.46■□□□□ 0.22
LMX1B-201ENST00000355497 POLD1P28340 1107 aa16.45■□□□□ 0.22
LMX1B-201ENST00000355497 TNNI3KQ59H18 835 aa16.45■□□□□ 0.22
LMX1B-201ENST00000355497 CABP7Q86V35 215 aa16.45■□□□□ 0.22
LMX1B-201ENST00000355497 PALM2Q8IXS6 379 aa16.45■□□□□ 0.22
LMX1B-201ENST00000355497 FPGT-TNNI3KV9GXZ4 949 aa16.45■□□□□ 0.22
LMX1B-201ENST00000355497 WDR7Q9Y4E6 1490 aa16.45■□□□□ 0.22
LMX1B-201ENST00000355497 RPGRIP1Q96KN7 1286 aa16.45■□□□□ 0.22
LMX1B-201ENST00000355497 IFIH1Q9BYX4 1025 aaKnown RBP16.45■□□□□ 0.22
LMX1B-201ENST00000355497 NCOA5Q9HCD5 579 aaKnown RBP16.45■□□□□ 0.22
LMX1B-201ENST00000355497 AMFRQ9UKV5 643 aa16.45■□□□□ 0.22
LMX1B-201ENST00000355497 PHBP35232 272 aa16.45■□□□□ 0.22
LMX1B-201ENST00000355497 YWHAEP62258 255 aaKnown RBP16.45■□□□□ 0.22
LMX1B-201ENST00000355497 SF3A3Q12874 501 aaKnown RBP eCLIP16.45■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms