RNA–Protein interactions for RNA: ENST00000336873.9

HPS4-201, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

APPRIS P1 TSL 5 BASIC

Gene HPS4, Length 3,786 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-201ENST00000336873 MTF1Q14872 753 aa9.35□□□□□ -0.91
HPS4-201ENST00000336873 SLC39A14Q15043 492 aa9.35□□□□□ -0.91
HPS4-201ENST00000336873 CCDC96Q2M329 555 aa9.35□□□□□ -0.91
HPS4-201ENST00000336873 MACROD2A1Z1Q3 448 aa9.35□□□□□ -0.91
HPS4-201ENST00000336873 NEMFO60524 1076 aa9.35□□□□□ -0.91
HPS4-201ENST00000336873 ZMYND10O75800 440 aa9.35□□□□□ -0.91
HPS4-201ENST00000336873 CAVIN2O95810 425 aa9.35□□□□□ -0.91
HPS4-201ENST00000336873 PRDX5P30044 214 aa9.35□□□□□ -0.91
HPS4-201ENST00000336873 IRX3P78415 501 aaPredicted RBP9.35□□□□□ -0.91
HPS4-201ENST00000336873 TFAP4Q01664 338 aa9.35□□□□□ -0.91
HPS4-201ENST00000336873 EXOSC10Q01780 885 aaKnown RBP9.35□□□□□ -0.91
HPS4-201ENST00000336873 SF3A3Q12874 501 aaKnown RBP eCLIP9.35□□□□□ -0.919e-7■■■■□ 22
HPS4-201ENST00000336873 PTGDRQ13258 359 aa9.35□□□□□ -0.91
HPS4-201ENST00000336873 TDRD12Q587J7 1177 aaKnown RBP9.35□□□□□ -0.91
HPS4-201ENST00000336873 DHX40Q8IX18 779 aaKnown RBP9.35□□□□□ -0.91
HPS4-201ENST00000336873 KRT222Q8N1A0 295 aa9.35□□□□□ -0.91
HPS4-201ENST00000336873 SLC44A5Q8NCS7 719 aa9.35□□□□□ -0.91
HPS4-201ENST00000336873 STRBPQ96SI9 672 aaKnown RBP9.35□□□□□ -0.91
HPS4-201ENST00000336873 SOS2Q07890 1332 aaPredicted RBP9.34□□□□□ -0.91
HPS4-201ENST00000336873 MED23Q9ULK4 1368 aa9.34□□□□□ -0.91
HPS4-201ENST00000336873 YEATS4O95619 227 aa9.34□□□□□ -0.91
HPS4-201ENST00000336873 CMA1P23946 247 aa9.34□□□□□ -0.91
HPS4-201ENST00000336873 RFC4P35249 363 aa9.34□□□□□ -0.91
HPS4-201ENST00000336873 KRT2P35908 639 aa9.34□□□□□ -0.91
HPS4-201ENST00000336873 IQCB1Q15051 598 aa9.34□□□□□ -0.91
HPS4-201ENST00000336873 RABL6Q3YEC7 729 aaPredicted RBP9.34□□□□□ -0.91
HPS4-201ENST00000336873 SHC4Q6S5L8 630 aa9.34□□□□□ -0.91
HPS4-201ENST00000336873 NKX2-3Q8TAU0 364 aa9.34□□□□□ -0.91
HPS4-201ENST00000336873 CCDC47Q96A33 483 aaKnown RBP9.34□□□□□ -0.91
HPS4-201ENST00000336873 FUCA2Q9BTY2 467 aa9.34□□□□□ -0.91
HPS4-201ENST00000336873 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.34□□□□□ -0.91
HPS4-201ENST00000336873 CNNM2Q9H8M5 875 aa9.34□□□□□ -0.91
HPS4-201ENST00000336873 LOC102724428A0A0B4J2F2 783 aa9.34□□□□□ -0.91
HPS4-201ENST00000336873 SIK1P57059 783 aa9.34□□□□□ -0.91
HPS4-201ENST00000336873 ERFEQ4G0M1 354 aa9.34□□□□□ -0.91
HPS4-201ENST00000336873 KRBA2Q6ZNG9 492 aa9.34□□□□□ -0.91
HPS4-201ENST00000336873 ANKRD13CQ8N6S4 541 aa9.34□□□□□ -0.91
HPS4-201ENST00000336873 PPP1R13BQ96KQ4 1090 aa9.34□□□□□ -0.91
HPS4-201ENST00000336873 FAM208AQ9UK61 1670 aaKnown RBP9.34□□□□□ -0.91
HPS4-201ENST00000336873 SPATA31A3Q5VYP0 1347 aa9.34□□□□□ -0.91
HPS4-201ENST00000336873 AKAP12Q02952 1782 aa9.34□□□□□ -0.91
HPS4-201ENST00000336873 USP17L8P0C7I0 530 aa9.34□□□□□ -0.92
HPS4-201ENST00000336873 NAPAP54920 295 aa9.34□□□□□ -0.92
HPS4-201ENST00000336873 ASIC1P78348 528 aa9.34□□□□□ -0.92
HPS4-201ENST00000336873 EVX2Q03828 476 aa9.34□□□□□ -0.92
HPS4-201ENST00000336873 PDE4BQ07343 736 aa9.34□□□□□ -0.92
HPS4-201ENST00000336873 WWC2Q6AWC2 1192 aa9.34□□□□□ -0.92
HPS4-201ENST00000336873 FBXO38Q6PIJ6 1188 aa9.34□□□□□ -0.92
HPS4-201ENST00000336873 SYMPKQ92797 1274 aaKnown RBP9.34□□□□□ -0.92
HPS4-201ENST00000336873 TMEM87BQ96K49 555 aa9.34□□□□□ -0.92
HPS4-201ENST00000336873 UTP3Q9NQZ2 479 aaKnown RBP eCLIP9.34□□□□□ -0.922e-6■■■■■ 76
HPS4-201ENST00000336873 SOWAHDA6NJG2 315 aa9.33□□□□□ -0.92
HPS4-201ENST00000336873 DEXIO95424 95 aa9.33□□□□□ -0.92
HPS4-201ENST00000336873 ZSCAN20P17040 1043 aaPredicted RBP9.33□□□□□ -0.92
HPS4-201ENST00000336873 TXKP42681 527 aa9.33□□□□□ -0.92
HPS4-201ENST00000336873 TERF1P54274 439 aa9.33□□□□□ -0.92
HPS4-201ENST00000336873 INF2Q27J81 1249 aa9.33□□□□□ -0.92
HPS4-201ENST00000336873 USPL1Q5W0Q7 1092 aa9.33□□□□□ -0.92
HPS4-201ENST00000336873 MB21D2Q8IYB1 491 aaPredicted RBP9.33□□□□□ -0.92
HPS4-201ENST00000336873 CRNKL1Q9BZJ0 848 aaKnown RBP9.33□□□□□ -0.92
HPS4-201ENST00000336873 GPCPD1Q9NPB8 672 aa9.33□□□□□ -0.92
HPS4-201ENST00000336873 SEPT11Q9NVA2 429 aaKnown RBP9.33□□□□□ -0.92
HPS4-201ENST00000336873 CCDC87Q9NVE4 849 aa9.33□□□□□ -0.92
HPS4-201ENST00000336873 ZNHIT6Q9NWK9 470 aaKnown RBP9.33□□□□□ -0.92
HPS4-201ENST00000336873 C1orf167Q5SNV9 1468 aa9.33□□□□□ -0.92
HPS4-201ENST00000336873 DIP2AQ14689 1571 aa9.33□□□□□ -0.92
HPS4-201ENST00000336873 PP2D1A8MPX8 630 aa9.33□□□□□ -0.92
HPS4-201ENST00000336873 SH2B2O14492 632 aaPredicted RBP9.33□□□□□ -0.92
HPS4-201ENST00000336873 TEX33O43247 280 aa9.33□□□□□ -0.92
HPS4-201ENST00000336873 ARMCX5Q6P1M9 558 aa9.33□□□□□ -0.92
HPS4-201ENST00000336873 SMARCC2Q8TAQ2 1214 aa9.33□□□□□ -0.92
HPS4-201ENST00000336873 ZMYM6O95789 1325 aa9.33□□□□□ -0.92
HPS4-201ENST00000336873 TFRCP02786 760 aaKnown RBP9.33□□□□□ -0.92
HPS4-201ENST00000336873 KRT9P35527 623 aa9.33□□□□□ -0.92
HPS4-201ENST00000336873 TNNI2P48788 182 aa9.33□□□□□ -0.92
HPS4-201ENST00000336873 RILPL1Q5EBL4 403 aa9.33□□□□□ -0.92
HPS4-201ENST00000336873 TTC38Q5R3I4 469 aa9.33□□□□□ -0.92
HPS4-201ENST00000336873 TCERG1LQ5VWI1 586 aa9.33□□□□□ -0.92
HPS4-201ENST00000336873 PLA2G4DQ86XP0 818 aa9.33□□□□□ -0.92
HPS4-201ENST00000336873 SMAP1Q8IYB5 467 aaPredicted RBP9.33□□□□□ -0.92
HPS4-201ENST00000336873 LRRN4CLQ8ND94 238 aa9.33□□□□□ -0.92
HPS4-201ENST00000336873 CELF1Q92879 486 aaKnown RBP9.33□□□□□ -0.92
HPS4-201ENST00000336873 MRFAP1L1Q96HT8 127 aa9.33□□□□□ -0.92
HPS4-201ENST00000336873 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP9.33□□□□□ -0.92
HPS4-201ENST00000336873 TFR2Q9UP52 801 aa9.33□□□□□ -0.92
HPS4-201ENST00000336873 MARF1Q9Y4F3 1742 aaKnown RBP9.32□□□□□ -0.92
HPS4-201ENST00000336873 USP17L3A6NCW0 530 aa9.32□□□□□ -0.92
HPS4-201ENST00000336873 USP17L4A6NCW7 530 aa9.32□□□□□ -0.92
HPS4-201ENST00000336873 TCP10Q12799 353 aa9.32□□□□□ -0.92
HPS4-201ENST00000336873 STIM1Q13586 685 aa9.32□□□□□ -0.92
HPS4-201ENST00000336873 KCTD19Q17RG1 926 aaPredicted RBP9.32□□□□□ -0.92
HPS4-201ENST00000336873 USP17L1Q7RTZ2 530 aa9.32□□□□□ -0.92
HPS4-201ENST00000336873 SEC63Q9UGP8 760 aaKnown RBP9.32□□□□□ -0.92
HPS4-201ENST00000336873 HPS5Q9UPZ3 1129 aa9.32□□□□□ -0.92
HPS4-201ENST00000336873 MROH7-TTC4A0A0A0MT08 1334 aa9.32□□□□□ -0.92
HPS4-201ENST00000336873 UBN2Q6ZU65 1347 aa9.32□□□□□ -0.92
HPS4-201ENST00000336873 ARHGAP23Q9P227 1491 aa9.32□□□□□ -0.92
HPS4-201ENST00000336873 ANKRD65E5RJM6 399 aa9.32□□□□□ -0.92
HPS4-201ENST00000336873 HIBADHP31937 336 aaKnown RBP9.32□□□□□ -0.92
HPS4-201ENST00000336873 CASP14P31944 242 aa9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms