RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 TSC1Q92574 1164 aa15.77■□□□□ 0.12
COL7A1-201ENST00000328333 IFT140Q96RY7 1462 aa15.77■□□□□ 0.11
COL7A1-201ENST00000328333 CACNA1FO60840 1977 aa15.77■□□□□ 0.11
COL7A1-201ENST00000328333 BCL2L12Q9HB09 334 aa15.77■□□□□ 0.11
COL7A1-201ENST00000328333 ANGPTL2Q9UKU9 493 aa15.77■□□□□ 0.11
COL7A1-201ENST00000328333 AK2P54819 239 aa15.77■□□□□ 0.11
COL7A1-201ENST00000328333 GDAP1L1Q96MZ0 367 aa15.77■□□□□ 0.11
COL7A1-201ENST00000328333 PTPDC1A2A3K4 754 aa15.76■□□□□ 0.11
COL7A1-201ENST00000328333 TCP1P17987 556 aaKnown RBP15.76■□□□□ 0.11
COL7A1-201ENST00000328333 PEX19P40855 299 aa15.76■□□□□ 0.11
COL7A1-201ENST00000328333 RPS6KA2Q15349 733 aa15.76■□□□□ 0.11
COL7A1-201ENST00000328333 DTNBP1Q96EV8 351 aa15.76■□□□□ 0.11
COL7A1-201ENST00000328333 STK38LQ9Y2H1 464 aa15.76■□□□□ 0.11
COL7A1-201ENST00000328333 DUOX2Q9NRD8 1548 aa15.76■□□□□ 0.11
COL7A1-201ENST00000328333 CLTAP09496 248 aa15.76■□□□□ 0.11
COL7A1-201ENST00000328333 TRIML1Q8N9V2 468 aa15.76■□□□□ 0.11
COL7A1-201ENST00000328333 BZW2Q9Y6E2 419 aaKnown RBP15.76■□□□□ 0.11
COL7A1-201ENST00000328333 A0A087WUV0 522 aaPredicted RBP15.76■□□□□ 0.11
COL7A1-201ENST00000328333 GOLGA8CPA6NN73 597 aa15.76■□□□□ 0.11
COL7A1-201ENST00000328333 SPECC1L-ADORA2AF8WAN1 911 aa15.76■□□□□ 0.11
COL7A1-201ENST00000328333 CXorf38Q8TB03 319 aa15.76■□□□□ 0.11
COL7A1-201ENST00000328333 DDX54Q8TDD1 881 aaKnown RBP15.76■□□□□ 0.11
COL7A1-201ENST00000328333 FGFR1OP2Q9NVK5 253 aa15.76■□□□□ 0.11
COL7A1-201ENST00000328333 NLRP12P59046 1061 aa15.76■□□□□ 0.11
COL7A1-201ENST00000328333 NMIQ13287 307 aaPredicted RBP15.76■□□□□ 0.11
COL7A1-201ENST00000328333 MRFAP1L1Q96HT8 127 aa15.76■□□□□ 0.11
COL7A1-201ENST00000328333 RRP15Q9Y3B9 282 aaKnown RBP15.76■□□□□ 0.11
COL7A1-201ENST00000328333 CNPY4Q8N129 248 aa15.76■□□□□ 0.11
COL7A1-201ENST00000328333 DKC1O60832 514 aaKnown RBP eCLIP15.76■□□□□ 0.11
COL7A1-201ENST00000328333 IL9RQ01113 521 aa15.76■□□□□ 0.11
COL7A1-201ENST00000328333 CSGALNACT2Q8N6G5 542 aa15.76■□□□□ 0.11
COL7A1-201ENST00000328333 TTC4O95801 387 aa15.76■□□□□ 0.11
COL7A1-201ENST00000328333 CREB3L3Q68CJ9 461 aa15.76■□□□□ 0.11
COL7A1-201ENST00000328333 KIFC3Q9BVG8 833 aa15.76■□□□□ 0.11
COL7A1-201ENST00000328333 HAND2P61296 217 aa15.76■□□□□ 0.11
COL7A1-201ENST00000328333 BCAS4Q8TDM0 211 aa15.76■□□□□ 0.11
COL7A1-201ENST00000328333 AMFRQ9UKV5 643 aa15.75■□□□□ 0.11
COL7A1-201ENST00000328333 KDM5DQ9BY66 1539 aa15.75■□□□□ 0.11
COL7A1-201ENST00000328333 ABCC5O15440 1437 aa15.75■□□□□ 0.11
COL7A1-201ENST00000328333 PHLPP2Q6ZVD8 1323 aa15.75■□□□□ 0.11
COL7A1-201ENST00000328333 DYNC1I2Q13409 638 aaKnown RBP15.75■□□□□ 0.11
COL7A1-201ENST00000328333 NBPF14Q5TI25 921 aa15.75■□□□□ 0.11
COL7A1-201ENST00000328333 ANO1Q5XXA6 986 aa15.75■□□□□ 0.11
COL7A1-201ENST00000328333 PASKQ96RG2 1323 aa15.75■□□□□ 0.11
COL7A1-201ENST00000328333 TNFAIP3P21580 790 aa15.75■□□□□ 0.11
COL7A1-201ENST00000328333 TMEM87BQ96K49 555 aa15.75■□□□□ 0.11
COL7A1-201ENST00000328333 RAPGEF6Q8TEU7 1601 aa15.75■□□□□ 0.11
COL7A1-201ENST00000328333 PSMD6Q15008 389 aa15.75■□□□□ 0.11
COL7A1-201ENST00000328333 PAXIP1Q6ZW49 1069 aaPredicted RBP15.75■□□□□ 0.11
COL7A1-201ENST00000328333 GRM8O00222 908 aa15.75■□□□□ 0.11
COL7A1-201ENST00000328333 SERPINB6P35237 376 aa15.75■□□□□ 0.11
COL7A1-201ENST00000328333 POSTNQ15063 836 aa15.75■□□□□ 0.11
COL7A1-201ENST00000328333 NBPF10Q6P3W6 841 aaKnown RBP15.75■□□□□ 0.11
COL7A1-201ENST00000328333 IWS1Q96ST2 819 aa15.75■□□□□ 0.11
COL7A1-201ENST00000328333 EPB41L3Q9Y2J2 1087 aaPredicted RBP15.75■□□□□ 0.11
COL7A1-201ENST00000328333 MAGEF1Q9HAY2 307 aa15.75■□□□□ 0.11
COL7A1-201ENST00000328333 LDHAL6AQ6ZMR3 332 aa15.75■□□□□ 0.11
COL7A1-201ENST00000328333 MBIPQ9NS73 344 aa15.75■□□□□ 0.11
COL7A1-201ENST00000328333 PALM3A6NDB9 673 aaPredicted RBP15.74■□□□□ 0.11
COL7A1-201ENST00000328333 GNGT1P63211 74 aa15.74■□□□□ 0.11
COL7A1-201ENST00000328333 OGFOD1Q8N543 542 aa15.74■□□□□ 0.11
COL7A1-201ENST00000328333 HELLSQ9NRZ9 838 aa15.74■□□□□ 0.11
COL7A1-201ENST00000328333 ZNF202O95125 648 aa15.74■□□□□ 0.11
COL7A1-201ENST00000328333 RASA3Q14644 834 aa15.74■□□□□ 0.11
COL7A1-201ENST00000328333 ZNF277Q9NRM2 450 aaPredicted RBP15.74■□□□□ 0.11
COL7A1-201ENST00000328333 N4BP1O75113 896 aaKnown RBP15.74■□□□□ 0.11
COL7A1-201ENST00000328333 PODNQ7Z5L7 613 aa15.74■□□□□ 0.11
COL7A1-201ENST00000328333 PPP1R2P3Q6NXS1 205 aa15.74■□□□□ 0.11
COL7A1-201ENST00000328333 ZNF804AQ7Z570 1209 aa15.74■□□□□ 0.11
COL7A1-201ENST00000328333 NUDT16Q96DE0 195 aaKnown RBP15.74■□□□□ 0.11
COL7A1-201ENST00000328333 DCTPP1Q9H773 170 aa15.74■□□□□ 0.11
COL7A1-201ENST00000328333 KRT5P13647 590 aa15.74■□□□□ 0.11
COL7A1-201ENST00000328333 CARD6Q9BX69 1037 aa15.74■□□□□ 0.11
COL7A1-201ENST00000328333 SART1O43290 800 aaKnown RBP15.74■□□□□ 0.11
COL7A1-201ENST00000328333 PDZD8Q8NEN9 1154 aa15.74■□□□□ 0.11
COL7A1-201ENST00000328333 FNBP1Q96RU3 617 aa15.74■□□□□ 0.11
COL7A1-201ENST00000328333 CREB3O43889 395 aa15.73■□□□□ 0.11
COL7A1-201ENST00000328333 PCYT1AP49585 367 aa15.73■□□□□ 0.11
COL7A1-201ENST00000328333 NECAB1Q8N987 351 aa15.73■□□□□ 0.11
COL7A1-201ENST00000328333 CCDC151A5D8V7 595 aa15.73■□□□□ 0.11
COL7A1-201ENST00000328333 ST13P4Q8IZP2 240 aaPredicted RBP15.73■□□□□ 0.11
COL7A1-201ENST00000328333 NSMCE1Q8WV22 266 aa15.73■□□□□ 0.11
COL7A1-201ENST00000328333 ATP5HO75947 161 aa15.73■□□□□ 0.11
COL7A1-201ENST00000328333 P4HA1P13674 534 aa15.73■□□□□ 0.11
COL7A1-201ENST00000328333 NME8Q8N427 588 aa15.73■□□□□ 0.11
COL7A1-201ENST00000328333 SH2D4AQ9H788 454 aa15.73■□□□□ 0.11
COL7A1-201ENST00000328333 HYOU1Q9Y4L1 999 aa15.73■□□□□ 0.11
COL7A1-201ENST00000328333 KDM3AQ9Y4C1 1321 aa15.73■□□□□ 0.11
COL7A1-201ENST00000328333 POLR3AO14802 1390 aaPredicted RBP15.73■□□□□ 0.11
COL7A1-201ENST00000328333 YY1AP1Q9H869 796 aa15.73■□□□□ 0.11
COL7A1-201ENST00000328333 CDK13Q14004 1512 aaKnown RBP15.73■□□□□ 0.11
COL7A1-201ENST00000328333 RABEP2Q9H5N1 569 aa15.73■□□□□ 0.11
COL7A1-201ENST00000328333 RNF14Q9UBS8 474 aa15.73■□□□□ 0.11
COL7A1-201ENST00000328333 PROSER2Q86WR7 435 aaPredicted RBP15.73■□□□□ 0.11
COL7A1-201ENST00000328333 USP26Q9BXU7 913 aa15.73■□□□□ 0.11
COL7A1-201ENST00000328333 SND1Q7KZF4 910 aaKnown RBP eCLIP15.72■□□□□ 0.11
COL7A1-201ENST00000328333 JRKLQ9Y4A0 524 aa15.72■□□□□ 0.11
COL7A1-201ENST00000328333 POTEB3A0JP26 581 aa15.72■□□□□ 0.11
COL7A1-201ENST00000328333 VWA3AA6NCI4 1184 aa15.72■□□□□ 0.11
COL7A1-201ENST00000328333 POTEBQ6S5H4 581 aa15.72■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms