RNA–Protein interactions for RNA: ENST00000306641.1

CSPG4P1Y-201, Transcript of CSPG4 pseudogene 1 Y-linked, humanhuman

TSL 1 (best) BASIC

Gene CSPG4P1Y, Length 795 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P1Y-201ENST00000306641 SBK1Q52WX2 424 aa13.12□□□□□ -0.31
CSPG4P1Y-201ENST00000306641 OTUD7BQ6GQQ9 843 aa13.12□□□□□ -0.31
CSPG4P1Y-201ENST00000306641 ZNF589Q86UQ0 364 aaPredicted RBP13.12□□□□□ -0.31
CSPG4P1Y-201ENST00000306641 ZIC5Q96T25 663 aa13.12□□□□□ -0.31
CSPG4P1Y-201ENST00000306641 ZNF287Q9HBT7 754 aa13.12□□□□□ -0.31
CSPG4P1Y-201ENST00000306641 ZBTB21Q9ULJ3 1066 aa13.12□□□□□ -0.31
CSPG4P1Y-201ENST00000306641 CYP2D7A0A087X1C5 515 aa13.11□□□□□ -0.31
CSPG4P1Y-201ENST00000306641 USP17L5A8MUK1 530 aa13.11□□□□□ -0.31
CSPG4P1Y-201ENST00000306641 MPHOSPH10O00566 681 aaKnown RBP13.11□□□□□ -0.31
CSPG4P1Y-201ENST00000306641 IRF6O14896 467 aa13.11□□□□□ -0.31
CSPG4P1Y-201ENST00000306641 CA12O43570 354 aa13.11□□□□□ -0.31
CSPG4P1Y-201ENST00000306641 GABPAQ06546 454 aa13.11□□□□□ -0.31
CSPG4P1Y-201ENST00000306641 ABCB5Q2M3G0 1257 aa13.11□□□□□ -0.31
CSPG4P1Y-201ENST00000306641 BMP2KLQ5H9B9 411 aa13.11□□□□□ -0.31
CSPG4P1Y-201ENST00000306641 TATDN1Q6P1N9 297 aa13.11□□□□□ -0.31
CSPG4P1Y-201ENST00000306641 CASC1Q6TDU7 716 aa13.11□□□□□ -0.31
CSPG4P1Y-201ENST00000306641 C16orf86Q6ZW13 317 aa13.11□□□□□ -0.31
CSPG4P1Y-201ENST00000306641 SKAP1Q86WV1 359 aa13.11□□□□□ -0.31
CSPG4P1Y-201ENST00000306641 DYNLL2Q96FJ2 89 aa13.11□□□□□ -0.31
CSPG4P1Y-201ENST00000306641 ZHX2Q9Y6X8 837 aa13.11□□□□□ -0.31
CSPG4P1Y-201ENST00000306641 GREB1LQ9C091 1923 aaPredicted RBP13.11□□□□□ -0.31
CSPG4P1Y-201ENST00000306641 ZMYM6O95789 1325 aa13.11□□□□□ -0.31
CSPG4P1Y-201ENST00000306641 CCL15-CCL14A0A0B4J2E2 113 aa13.1□□□□□ -0.31
CSPG4P1Y-201ENST00000306641 ALDH1A1P00352 501 aa13.1□□□□□ -0.31
CSPG4P1Y-201ENST00000306641 GH2P01242 217 aa13.1□□□□□ -0.31
CSPG4P1Y-201ENST00000306641 HSPD1P10809 573 aaKnown RBP13.1□□□□□ -0.31
CSPG4P1Y-201ENST00000306641 CETPP11597 493 aa13.1□□□□□ -0.31
CSPG4P1Y-201ENST00000306641 SHMT1P34896 483 aa13.1□□□□□ -0.31
CSPG4P1Y-201ENST00000306641 EVX2Q03828 476 aa13.1□□□□□ -0.31
CSPG4P1Y-201ENST00000306641 RAB3GAP1Q15042 981 aa13.1□□□□□ -0.31
CSPG4P1Y-201ENST00000306641 CCL15Q16663 113 aa13.1□□□□□ -0.31
CSPG4P1Y-201ENST00000306641 VPS53Q5VIR6 699 aa13.1□□□□□ -0.31
CSPG4P1Y-201ENST00000306641 STK11IPQ8N1F8 1099 aa13.1□□□□□ -0.31
CSPG4P1Y-201ENST00000306641 SLC44A5Q8NCS7 719 aa13.1□□□□□ -0.31
CSPG4P1Y-201ENST00000306641 MKNK2Q9HBH9 465 aa13.1□□□□□ -0.31
CSPG4P1Y-201ENST00000306641 WBP1LQ9NX94 342 aa13.1□□□□□ -0.31
CSPG4P1Y-201ENST00000306641 TRIM75PA6NK02 468 aa13.09□□□□□ -0.31
CSPG4P1Y-201ENST00000306641 CXCL11O14625 94 aa13.09□□□□□ -0.31
CSPG4P1Y-201ENST00000306641 CHMLP26374 656 aa13.09□□□□□ -0.31
CSPG4P1Y-201ENST00000306641 TM4SF4P48230 202 aa13.09□□□□□ -0.31
CSPG4P1Y-201ENST00000306641 CDK8P49336 464 aa13.09□□□□□ -0.31
CSPG4P1Y-201ENST00000306641 PDE4BQ07343 736 aa13.09□□□□□ -0.31
CSPG4P1Y-201ENST00000306641 PPARAQ07869 468 aa13.09□□□□□ -0.31
CSPG4P1Y-201ENST00000306641 ZNF280CQ8ND82 737 aa13.09□□□□□ -0.31
CSPG4P1Y-201ENST00000306641 CCDC17Q96LX7 622 aa13.09□□□□□ -0.31
CSPG4P1Y-201ENST00000306641 SAGE1Q9NXZ1 904 aa13.09□□□□□ -0.31
CSPG4P1Y-201ENST00000306641 FRMD4AQ9P2Q2 1039 aaPredicted RBP13.09□□□□□ -0.31
CSPG4P1Y-201ENST00000306641 KCNH4Q9UQ05 1017 aa13.09□□□□□ -0.31
CSPG4P1Y-201ENST00000306641 RRP1BQ14684 758 aaKnown RBP13.08□□□□□ -0.32
CSPG4P1Y-201ENST00000306641 ALX1Q15699 326 aa13.08□□□□□ -0.32
CSPG4P1Y-201ENST00000306641 GADL1Q6ZQY3 521 aa13.08□□□□□ -0.32
CSPG4P1Y-201ENST00000306641 TMEM179Q6ZVK1 233 aa13.08□□□□□ -0.32
CSPG4P1Y-201ENST00000306641 FASTKD5Q7L8L6 764 aaKnown RBP13.08□□□□□ -0.32
CSPG4P1Y-201ENST00000306641 CCDC84Q86UT8 332 aaPredicted RBP13.08□□□□□ -0.32
CSPG4P1Y-201ENST00000306641 IFNL1Q8IU54 200 aa13.08□□□□□ -0.32
CSPG4P1Y-201ENST00000306641 FEZ1Q99689 392 aa13.08□□□□□ -0.32
CSPG4P1Y-201ENST00000306641 DSCC1Q9BVC3 393 aa13.08□□□□□ -0.32
CSPG4P1Y-201ENST00000306641 AFG3L2Q9Y4W6 797 aa13.08□□□□□ -0.32
CSPG4P1Y-201ENST00000306641 A0A0G2JLL6 359 aaPredicted RBP13.07□□□□□ -0.32
CSPG4P1Y-201ENST00000306641 TESPA1A2RU30 521 aaPredicted RBP13.07□□□□□ -0.32
CSPG4P1Y-201ENST00000306641 FOXP2O15409 715 aa13.07□□□□□ -0.32
CSPG4P1Y-201ENST00000306641 CTCFP49711 727 aaPredicted RBP13.07□□□□□ -0.32
CSPG4P1Y-201ENST00000306641 PRRT2Q7Z6L0 340 aaPredicted RBP13.07□□□□□ -0.32
CSPG4P1Y-201ENST00000306641 ZNF444Q8N0Y2 327 aaPredicted RBP13.07□□□□□ -0.32
CSPG4P1Y-201ENST00000306641 BRI3BPQ8WY22 251 aa13.07□□□□□ -0.32
CSPG4P1Y-201ENST00000306641 MS4A4AQ96JQ5 239 aa13.07□□□□□ -0.32
CSPG4P1Y-201ENST00000306641 TMOD4Q9NZQ9 345 aa13.07□□□□□ -0.32
CSPG4P1Y-201ENST00000306641 SMIM22K7EJ46 135 aa13.06□□□□□ -0.32
CSPG4P1Y-201ENST00000306641 IGF2BP3O00425 579 aaKnown RBP eCLIP13.06□□□□□ -0.32
CSPG4P1Y-201ENST00000306641 FOXN1O15353 648 aa13.06□□□□□ -0.32
CSPG4P1Y-201ENST00000306641 CDC45O75419 566 aa13.06□□□□□ -0.32
CSPG4P1Y-201ENST00000306641 TRPA1O75762 1119 aa13.06□□□□□ -0.32
CSPG4P1Y-201ENST00000306641 FGAP02671 866 aa13.06□□□□□ -0.32
CSPG4P1Y-201ENST00000306641 AKR1B1P15121 316 aa13.06□□□□□ -0.32
CSPG4P1Y-201ENST00000306641 ICA1Q05084 483 aa13.06□□□□□ -0.32
CSPG4P1Y-201ENST00000306641 CTDSPL2Q05D32 466 aa13.06□□□□□ -0.32
CSPG4P1Y-201ENST00000306641 SPP2Q13103 211 aa13.06□□□□□ -0.32
CSPG4P1Y-201ENST00000306641 MTMR2Q13614 643 aa13.06□□□□□ -0.32
CSPG4P1Y-201ENST00000306641 SHROOM1Q2M3G4 852 aaPredicted RBP13.06□□□□□ -0.32
CSPG4P1Y-201ENST00000306641 KIAA1211Q6ZU35 1233 aa13.06□□□□□ -0.32
CSPG4P1Y-201ENST00000306641 WDR18Q9BV38 432 aa13.06□□□□□ -0.32
CSPG4P1Y-201ENST00000306641 SH2D4AQ9H788 454 aa13.06□□□□□ -0.32
CSPG4P1Y-201ENST00000306641 ARHGEF10LQ9HCE6 1279 aa13.06□□□□□ -0.32
CSPG4P1Y-201ENST00000306641 ZCCHC17Q9NP64 241 aaKnown RBP13.06□□□□□ -0.32
CSPG4P1Y-201ENST00000306641 TOMM22Q9NS69 142 aa13.06□□□□□ -0.32
CSPG4P1Y-201ENST00000306641 RNF186Q9NXI6 227 aa13.06□□□□□ -0.32
CSPG4P1Y-201ENST00000306641 CTNNA3Q9UI47 895 aa13.06□□□□□ -0.32
CSPG4P1Y-201ENST00000306641 CASP8AP2Q9UKL3 1982 aa13.06□□□□□ -0.32
CSPG4P1Y-201ENST00000306641 C19orf81C9J6K1 198 aa13.05□□□□□ -0.32
CSPG4P1Y-201ENST00000306641 USP17L10C9JJH3 530 aa13.05□□□□□ -0.32
CSPG4P1Y-201ENST00000306641 ZNF213O14771 459 aa13.05□□□□□ -0.32
CSPG4P1Y-201ENST00000306641 SGSM2O43147 1006 aa13.05□□□□□ -0.32
CSPG4P1Y-201ENST00000306641 PRDM1O75626 825 aa13.05□□□□□ -0.32
CSPG4P1Y-201ENST00000306641 TSPY3P0CV98 308 aa13.05□□□□□ -0.32
CSPG4P1Y-201ENST00000306641 TSPY8P0CW00 308 aa13.05□□□□□ -0.32
CSPG4P1Y-201ENST00000306641 USP14P54578 494 aa13.05□□□□□ -0.32
CSPG4P1Y-201ENST00000306641 HMGCS2P54868 508 aa13.05□□□□□ -0.32
CSPG4P1Y-201ENST00000306641 HAND2P61296 217 aa13.05□□□□□ -0.32
CSPG4P1Y-201ENST00000306641 PABPC4Q13310 644 aaKnown RBP eCLIP13.05□□□□□ -0.32
CSPG4P1Y-201ENST00000306641 SEPT2Q15019 361 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms