RNA–Protein interactions for RNA: ENST00000297979.9

C9orf3-202, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best) BASIC

Gene C9orf3, Length 2,820 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-202ENST00000297979 FAM47AQ5JRC9 791 aa16.59■□□□□ 0.25
C9orf3-202ENST00000297979 FANCBQ8NB91 859 aa16.59■□□□□ 0.25
C9orf3-202ENST00000297979 SPATA32Q96LK8 384 aa16.59■□□□□ 0.25
C9orf3-202ENST00000297979 ALG1Q9BT22 464 aa16.59■□□□□ 0.25
C9orf3-202ENST00000297979 SAP30BPQ9UHR5 308 aaKnown RBP16.59■□□□□ 0.25
C9orf3-202ENST00000297979 SSRP1Q08945 709 aaKnown RBP16.59■□□□□ 0.25
C9orf3-202ENST00000297979 PPP2R5BQ15173 497 aa16.59■□□□□ 0.25
C9orf3-202ENST00000297979 OTUD7BQ6GQQ9 843 aa16.59■□□□□ 0.25
C9orf3-202ENST00000297979 CATIPQ7Z7H3 387 aa16.59■□□□□ 0.25
C9orf3-202ENST00000297979 MXD3Q9BW11 206 aa16.59■□□□□ 0.25
C9orf3-202ENST00000297979 CFAP45Q9UL16 551 aa16.59■□□□□ 0.25
C9orf3-202ENST00000297979 ECE2O60344 883 aa16.58■□□□□ 0.25
C9orf3-202ENST00000297979 FMNL1O95466 1100 aaPredicted RBP16.58■□□□□ 0.25
C9orf3-202ENST00000297979 CCDC125Q86Z20 511 aa16.58■□□□□ 0.25
C9orf3-202ENST00000297979 DYNLL2Q96FJ2 89 aa16.58■□□□□ 0.25
C9orf3-202ENST00000297979 SLC26A6Q9BXS9 759 aa16.58■□□□□ 0.25
C9orf3-202ENST00000297979 MYH1P12882 1939 aa16.58■□□□□ 0.24
C9orf3-202ENST00000297979 ATL3Q6DD88 541 aa16.58■□□□□ 0.24
C9orf3-202ENST00000297979 SUPT20HQ8NEM7 779 aa16.58■□□□□ 0.24
C9orf3-202ENST00000297979 LEO1Q8WVC0 666 aaPredicted RBP16.58■□□□□ 0.24
C9orf3-202ENST00000297979 CALM1P0DP23 149 aa16.57■□□□□ 0.24
C9orf3-202ENST00000297979 CALM2P0DP24 149 aa16.57■□□□□ 0.24
C9orf3-202ENST00000297979 CALM3P0DP25 149 aa16.57■□□□□ 0.24
C9orf3-202ENST00000297979 PLCD1P51178 756 aa16.57■□□□□ 0.24
C9orf3-202ENST00000297979 FKBP1AP62942 108 aaKnown RBP16.57■□□□□ 0.24
C9orf3-202ENST00000297979 TRIM22Q8IYM9 498 aa16.57■□□□□ 0.24
C9orf3-202ENST00000297979 AIFM3Q96NN9 605 aa16.57■□□□□ 0.24
C9orf3-202ENST00000297979 MKNK2Q9HBH9 465 aa16.57■□□□□ 0.24
C9orf3-202ENST00000297979 ZNF646O15015 1829 aaPredicted RBP16.57■□□□□ 0.24
C9orf3-202ENST00000297979 DDAH1O94760 285 aa16.57■□□□□ 0.24
C9orf3-202ENST00000297979 STRIP1Q5VSL9 837 aa16.57■□□□□ 0.24
C9orf3-202ENST00000297979 GAS2L3Q86XJ1 694 aa16.57■□□□□ 0.24
C9orf3-202ENST00000297979 WASF1Q92558 559 aa16.57■□□□□ 0.24
C9orf3-202ENST00000297979 ZNF396Q96N95 335 aaPredicted RBP16.57■□□□□ 0.24
C9orf3-202ENST00000297979 ZNF287Q9HBT7 754 aa16.57■□□□□ 0.24
C9orf3-202ENST00000297979 SCN9AQ15858 1988 aa16.56■□□□□ 0.24
C9orf3-202ENST00000297979 NMT2O60551 498 aa16.56■□□□□ 0.24
C9orf3-202ENST00000297979 KIAA2012Q0VF49 1180 aa16.56■□□□□ 0.24
C9orf3-202ENST00000297979 HHIPL2Q6UWX4 724 aa16.56■□□□□ 0.24
C9orf3-202ENST00000297979 ILDR1Q86SU0 546 aaPredicted RBP16.56■□□□□ 0.24
C9orf3-202ENST00000297979 TTLL6Q8N841 843 aa16.56■□□□□ 0.24
C9orf3-202ENST00000297979 GJB4Q9NTQ9 266 aa16.56■□□□□ 0.24
C9orf3-202ENST00000297979 ADAMTSL1Q8N6G6 1762 aa16.56■□□□□ 0.24
C9orf3-202ENST00000297979 KIF13BQ9NQT8 1826 aa16.56■□□□□ 0.24
C9orf3-202ENST00000297979 C21orf2O43822 256 aa16.56■□□□□ 0.24
C9orf3-202ENST00000297979 SCNN1DP51172 638 aa16.56■□□□□ 0.24
C9orf3-202ENST00000297979 TFAP4Q01664 338 aa16.56■□□□□ 0.24
C9orf3-202ENST00000297979 AOC3Q16853 763 aa16.56■□□□□ 0.24
C9orf3-202ENST00000297979 GRIPAP1Q4V328 841 aa16.56■□□□□ 0.24
C9orf3-202ENST00000297979 TEKT1Q969V4 418 aa16.56■□□□□ 0.24
C9orf3-202ENST00000297979 TRIM29Q14134 588 aa16.55■□□□□ 0.24
C9orf3-202ENST00000297979 BRAPQ7Z569 592 aa16.55■□□□□ 0.24
C9orf3-202ENST00000297979 NBPF11Q86T75 865 aa16.55■□□□□ 0.24
C9orf3-202ENST00000297979 CRACR2BQ8N4Y2 399 aaPredicted RBP16.55■□□□□ 0.24
C9orf3-202ENST00000297979 KCNQ5Q9NR82 932 aa16.55■□□□□ 0.24
C9orf3-202ENST00000297979 RBM28Q9NW13 759 aaKnown RBP16.55■□□□□ 0.24
C9orf3-202ENST00000297979 MRE11P49959 708 aa16.55■□□□□ 0.24
C9orf3-202ENST00000297979 TROAPQ12815 778 aa16.55■□□□□ 0.24
C9orf3-202ENST00000297979 DACT2Q5SW24 774 aa16.55■□□□□ 0.24
C9orf3-202ENST00000297979 KRT40Q6A162 431 aa16.55■□□□□ 0.24
C9orf3-202ENST00000297979 C16orf86Q6ZW13 317 aa16.55■□□□□ 0.24
C9orf3-202ENST00000297979 KIF23Q02241 960 aaPredicted RBP16.55■□□□□ 0.24
C9orf3-202ENST00000297979 CCDC178Q5BJE1 867 aa16.55■□□□□ 0.24
C9orf3-202ENST00000297979 ZNF444Q8N0Y2 327 aaPredicted RBP16.55■□□□□ 0.24
C9orf3-202ENST00000297979 SLC44A5Q8NCS7 719 aa16.55■□□□□ 0.24
C9orf3-202ENST00000297979 GRPEL1Q9HAV7 217 aa16.55■□□□□ 0.24
C9orf3-202ENST00000297979 SYCE3A1L190 88 aa16.54■□□□□ 0.24
C9orf3-202ENST00000297979 USP17L3A6NCW0 530 aa16.54■□□□□ 0.24
C9orf3-202ENST00000297979 USP17L4A6NCW7 530 aa16.54■□□□□ 0.24
C9orf3-202ENST00000297979 CCDC93Q567U6 631 aa16.54■□□□□ 0.24
C9orf3-202ENST00000297979 CCDC183Q5T5S1 534 aa16.54■□□□□ 0.24
C9orf3-202ENST00000297979 USP17L1Q7RTZ2 530 aa16.54■□□□□ 0.24
C9orf3-202ENST00000297979 GOLGA6L4A6NEF3 574 aa16.54■□□□□ 0.24
C9orf3-202ENST00000297979 DEXIO95424 95 aa16.54■□□□□ 0.24
C9orf3-202ENST00000297979 TSPY3P0CV98 308 aa16.54■□□□□ 0.24
C9orf3-202ENST00000297979 TSPY8P0CW00 308 aa16.54■□□□□ 0.24
C9orf3-202ENST00000297979 DPEP1P16444 411 aa16.54■□□□□ 0.24
C9orf3-202ENST00000297979 RASA1P20936 1047 aa16.54■□□□□ 0.24
C9orf3-202ENST00000297979 RCSD1Q6JBY9 416 aa16.54■□□□□ 0.24
C9orf3-202ENST00000297979 DGKHQ86XP1 1220 aa16.54■□□□□ 0.24
C9orf3-202ENST00000297979 USP28Q96RU2 1077 aa16.54■□□□□ 0.24
C9orf3-202ENST00000297979 USP40Q9NVE5 1235 aa16.54■□□□□ 0.24
C9orf3-202ENST00000297979 PPIP5K2O43314 1243 aa16.53■□□□□ 0.24
C9orf3-202ENST00000297979 CRKP46108 304 aa16.53■□□□□ 0.24
C9orf3-202ENST00000297979 CDK8P49336 464 aa16.53■□□□□ 0.24
C9orf3-202ENST00000297979 PICALMQ13492 652 aa16.53■□□□□ 0.24
C9orf3-202ENST00000297979 CMTR1Q8N1G2 835 aaKnown RBP16.53■□□□□ 0.24
C9orf3-202ENST00000297979 CCDC82Q8N4S0 544 aa16.53■□□□□ 0.24
C9orf3-202ENST00000297979 RNF26Q9BY78 433 aaPredicted RBP16.53■□□□□ 0.24
C9orf3-202ENST00000297979 IL17RBQ9NRM6 502 aa16.53■□□□□ 0.24
C9orf3-202ENST00000297979 TCP11L1Q9NUJ3 509 aa16.53■□□□□ 0.24
C9orf3-202ENST00000297979 KIF28PB7ZC32 967 aa16.53■□□□□ 0.24
C9orf3-202ENST00000297979 UBE2Q2LH0YL09 131 aa16.53■□□□□ 0.24
C9orf3-202ENST00000297979 WDHD1O75717 1129 aaPredicted RBP16.53■□□□□ 0.24
C9orf3-202ENST00000297979 CEBPZQ03701 1054 aaKnown RBP16.53■□□□□ 0.24
C9orf3-202ENST00000297979 RTKN2Q8IZC4 609 aa16.53■□□□□ 0.24
C9orf3-202ENST00000297979 ANKS1AQ92625 1134 aa16.53■□□□□ 0.24
C9orf3-202ENST00000297979 RCOR1Q9UKL0 485 aa16.53■□□□□ 0.24
C9orf3-202ENST00000297979 MYH6P13533 1939 aa16.52■□□□□ 0.24
C9orf3-202ENST00000297979 KCNA3P22001 575 aa16.52■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms