RNA–Protein interactions for RNA: ENST00000296043.6

SHROOM3-201, Transcript of shroom family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHROOM3, Length 11,020 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-201ENST00000296043 CTTNBP2NLQ9P2B4 639 aa12.99□□□□□ -0.33
SHROOM3-201ENST00000296043 TSKSQ9UJT2 592 aa12.99□□□□□ -0.33
SHROOM3-201ENST00000296043 CHUKO15111 745 aa12.99□□□□□ -0.33
SHROOM3-201ENST00000296043 BRAPQ7Z569 592 aa12.99□□□□□ -0.33
SHROOM3-201ENST00000296043 TBC1D1Q86TI0 1168 aaPredicted RBP12.99□□□□□ -0.33
SHROOM3-201ENST00000296043 NEK2P51955 445 aa12.99□□□□□ -0.33
SHROOM3-201ENST00000296043 NME8Q8N427 588 aa12.99□□□□□ -0.33
SHROOM3-201ENST00000296043 CABP4P57796 275 aa12.98□□□□□ -0.33
SHROOM3-201ENST00000296043 GOLGA8FQ08AF8 430 aa12.98□□□□□ -0.33
SHROOM3-201ENST00000296043 GOLGA8DPQ0D2H9 430 aa12.98□□□□□ -0.33
SHROOM3-201ENST00000296043 THAP12O43422 761 aa12.98□□□□□ -0.33
SHROOM3-201ENST00000296043 KRT2P35908 639 aa12.98□□□□□ -0.33
SHROOM3-201ENST00000296043 ZNF287Q9HBT7 754 aa12.98□□□□□ -0.33
SHROOM3-201ENST00000296043 TRAF5O00463 557 aa12.98□□□□□ -0.33
SHROOM3-201ENST00000296043 MAN1A1P33908 653 aa12.98□□□□□ -0.33
SHROOM3-201ENST00000296043 NRBP1Q9UHY1 535 aa12.98□□□□□ -0.33
SHROOM3-201ENST00000296043 NFE2L3Q9Y4A8 694 aa12.98□□□□□ -0.33
SHROOM3-201ENST00000296043 WBP4O75554 376 aaKnown RBP12.98□□□□□ -0.33
SHROOM3-201ENST00000296043 FLOT1O75955 427 aa12.98□□□□□ -0.33
SHROOM3-201ENST00000296043 IL1RL1Q01638 556 aa12.98□□□□□ -0.33
SHROOM3-201ENST00000296043 GUCY2DQ02846 1103 aa12.98□□□□□ -0.33
SHROOM3-201ENST00000296043 PARP9Q8IXQ6 854 aa12.98□□□□□ -0.33
SHROOM3-201ENST00000296043 GPT2Q8TD30 523 aa12.98□□□□□ -0.33
SHROOM3-201ENST00000296043 RPGRIP1Q96KN7 1286 aa12.98□□□□□ -0.33
SHROOM3-201ENST00000296043 DPH5Q9H2P9 285 aa12.98□□□□□ -0.33
SHROOM3-201ENST00000296043 GIMAP4Q9NUV9 329 aa12.98□□□□□ -0.33
SHROOM3-201ENST00000296043 GRAMD1BQ3KR37 738 aa12.98□□□□□ -0.33
SHROOM3-201ENST00000296043 PPWD1Q96BP3 646 aaKnown RBP12.98□□□□□ -0.33
SHROOM3-201ENST00000296043 KAT14Q9H8E8 782 aa12.98□□□□□ -0.33
SHROOM3-201ENST00000296043 WDR46O15213 610 aaKnown RBP12.98□□□□□ -0.33
SHROOM3-201ENST00000296043 KCNA4P22459 653 aa12.98□□□□□ -0.33
SHROOM3-201ENST00000296043 IGHMBP2P38935 993 aaKnown RBP12.98□□□□□ -0.33
SHROOM3-201ENST00000296043 TAF7Q15545 349 aaPredicted RBP12.98□□□□□ -0.33
SHROOM3-201ENST00000296043 EHMT1Q9H9B1 1298 aa12.98□□□□□ -0.33
SHROOM3-201ENST00000296043 KCNH3Q9ULD8 1083 aa12.98□□□□□ -0.33
SHROOM3-201ENST00000296043 DEUP1Q05D60 604 aa12.98□□□□□ -0.33
SHROOM3-201ENST00000296043 NMIQ13287 307 aaPredicted RBP12.98□□□□□ -0.33
SHROOM3-201ENST00000296043 PALM3A6NDB9 673 aaPredicted RBP12.98□□□□□ -0.33
SHROOM3-201ENST00000296043 ZNF449Q6P9G9 518 aa12.98□□□□□ -0.33
SHROOM3-201ENST00000296043 WWC3Q9ULE0 1092 aa12.98□□□□□ -0.33
SHROOM3-201ENST00000296043 LRGUKQ96M69 825 aa12.98□□□□□ -0.33
SHROOM3-201ENST00000296043 CADPSQ9ULU8 1353 aa12.97□□□□□ -0.33
SHROOM3-201ENST00000296043 HS2ST1Q7LGA3 356 aa12.97□□□□□ -0.33
SHROOM3-201ENST00000296043 LRRC8AQ8IWT6 810 aa12.97□□□□□ -0.33
SHROOM3-201ENST00000296043 C16orf71Q8IYS4 520 aaPredicted RBP12.97□□□□□ -0.33
SHROOM3-201ENST00000296043 CCDC141Q6ZP82 1450 aa12.97□□□□□ -0.33
SHROOM3-201ENST00000296043 TNFAIP3P21580 790 aa12.97□□□□□ -0.33
SHROOM3-201ENST00000296043 PLS1Q14651 629 aa12.97□□□□□ -0.33
SHROOM3-201ENST00000296043 TMEM259Q4ZIN3 620 aa12.97□□□□□ -0.33
SHROOM3-201ENST00000296043 RSBN1LQ6PCB5 846 aaPredicted RBP12.97□□□□□ -0.33
SHROOM3-201ENST00000296043 CRACR2BQ8N4Y2 399 aaPredicted RBP12.97□□□□□ -0.33
SHROOM3-201ENST00000296043 TRIM58Q8NG06 486 aa12.97□□□□□ -0.33
SHROOM3-201ENST00000296043 SPC25Q9HBM1 224 aa12.97□□□□□ -0.33
SHROOM3-201ENST00000296043 TMOD2Q9NZR1 351 aa12.97□□□□□ -0.33
SHROOM3-201ENST00000296043 DKC1O60832 514 aaKnown RBP eCLIP12.97□□□□□ -0.33
SHROOM3-201ENST00000296043 NCBP1Q09161 790 aaKnown RBP12.97□□□□□ -0.33
SHROOM3-201ENST00000296043 NBPF6Q5VWK0 638 aa12.97□□□□□ -0.33
SHROOM3-201ENST00000296043 WDR75Q8IWA0 830 aaKnown RBP12.97□□□□□ -0.33
SHROOM3-201ENST00000296043 NBPF4Q96M43 638 aa12.97□□□□□ -0.33
SHROOM3-201ENST00000296043 POLR2DO15514 142 aaKnown RBP12.97□□□□□ -0.33
SHROOM3-201ENST00000296043 LRRC8CQ8TDW0 803 aa12.97□□□□□ -0.33
SHROOM3-201ENST00000296043 FBXO2Q9UK22 296 aaPredicted RBP12.97□□□□□ -0.33
SHROOM3-201ENST00000296043 ANKRD50Q9ULJ7 1429 aa12.97□□□□□ -0.33
SHROOM3-201ENST00000296043 CFAP70Q5T0N1 1121 aa12.97□□□□□ -0.33
SHROOM3-201ENST00000296043 CTAGE3PQ8IX95 158 aa12.97□□□□□ -0.33
SHROOM3-201ENST00000296043 KIFAP3Q92845 792 aa12.97□□□□□ -0.33
SHROOM3-201ENST00000296043 SEPT2Q15019 361 aa12.97□□□□□ -0.33
SHROOM3-201ENST00000296043 NBPF5PQ86XG9 351 aaPredicted RBP12.97□□□□□ -0.33
SHROOM3-201ENST00000296043 IFT122Q9HBG6 1241 aa12.97□□□□□ -0.33
SHROOM3-201ENST00000296043 NNTQ13423 1086 aa12.97□□□□□ -0.33
SHROOM3-201ENST00000296043 OLFML2BQ68BL8 750 aa12.97□□□□□ -0.33
SHROOM3-201ENST00000296043 KRT80Q6KB66 452 aa12.97□□□□□ -0.33
SHROOM3-201ENST00000296043 ENAHQ8N8S7 591 aaPredicted RBP12.97□□□□□ -0.33
SHROOM3-201ENST00000296043 FBXO18Q8NFZ0 1043 aa12.97□□□□□ -0.33
SHROOM3-201ENST00000296043 NELFBQ8WX92 580 aa12.97□□□□□ -0.33
SHROOM3-201ENST00000296043 HAUS8Q9BT25 410 aa12.97□□□□□ -0.33
SHROOM3-201ENST00000296043 CTNND1O60716 968 aaKnown RBP12.96□□□□□ -0.33
SHROOM3-201ENST00000296043 TMED10P49755 219 aaKnown RBP12.96□□□□□ -0.33
SHROOM3-201ENST00000296043 BSPRYQ5W0U4 402 aa12.96□□□□□ -0.33
SHROOM3-201ENST00000296043 JADE1Q6IE81 842 aa12.96□□□□□ -0.33
SHROOM3-201ENST00000296043 AMOTL2Q9Y2J4 779 aa12.96□□□□□ -0.33
SHROOM3-201ENST00000296043 KCNK3O14649 394 aa12.96□□□□□ -0.33
SHROOM3-201ENST00000296043 VWA3BQ502W6 1294 aa12.96□□□□□ -0.33
SHROOM3-201ENST00000296043 ZNF444Q8N0Y2 327 aaPredicted RBP12.96□□□□□ -0.33
SHROOM3-201ENST00000296043 CAMSAP2Q08AD1 1489 aa12.96□□□□□ -0.33
SHROOM3-201ENST00000296043 ZNF202O95125 648 aa12.96□□□□□ -0.33
SHROOM3-201ENST00000296043 RWDD2BP57060 319 aa12.96□□□□□ -0.33
SHROOM3-201ENST00000296043 USHBP1Q8N6Y0 703 aa12.96□□□□□ -0.33
SHROOM3-201ENST00000296043 HAUS7Q99871 368 aa12.96□□□□□ -0.33
SHROOM3-201ENST00000296043 DDX28Q9NUL7 540 aaKnown RBP12.96□□□□□ -0.33
SHROOM3-201ENST00000296043 CCDC152Q4G0S7 254 aa12.96□□□□□ -0.33
SHROOM3-201ENST00000296043 SFMBT2Q5VUG0 894 aa12.96□□□□□ -0.33
SHROOM3-201ENST00000296043 CREB3L3Q68CJ9 461 aa12.96□□□□□ -0.33
SHROOM3-201ENST00000296043 JARID2Q92833 1246 aaPredicted RBP12.96□□□□□ -0.33
SHROOM3-201ENST00000296043 INTS9Q9NV88 658 aaKnown RBP12.96□□□□□ -0.33
SHROOM3-201ENST00000296043 DAAM1Q9Y4D1 1078 aa12.96□□□□□ -0.33
SHROOM3-201ENST00000296043 SLC30A9Q6PML9 568 aa12.96□□□□□ -0.34
SHROOM3-201ENST00000296043 C2CD5Q86YS7 1000 aa12.96□□□□□ -0.34
SHROOM3-201ENST00000296043 P3H4Q92791 437 aa12.96□□□□□ -0.34
SHROOM3-201ENST00000296043 ERBB4Q15303 1308 aa12.96□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms