RNA–Protein interactions for RNA: ENST00000295718.6

PTPRN-201, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PTPRN, Length 3,784 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-201ENST00000295718 SDR42E1Q8WUS8 393 aa16.33■□□□□ 0.2
PTPRN-201ENST00000295718 KCNB2Q92953 911 aa16.33■□□□□ 0.2
PTPRN-201ENST00000295718 CCDC194A0A1B0GVG4 234 aa16.33■□□□□ 0.2
PTPRN-201ENST00000295718 TBC1D8O95759 1140 aa16.33■□□□□ 0.2
PTPRN-201ENST00000295718 GUCY1A2P33402 732 aa16.33■□□□□ 0.2
PTPRN-201ENST00000295718 PAFAH1B1P43034 410 aa16.33■□□□□ 0.2
PTPRN-201ENST00000295718 TBC1D10CQ8IV04 446 aa16.33■□□□□ 0.2
PTPRN-201ENST00000295718 DCAF5Q96JK2 942 aa16.33■□□□□ 0.2
PTPRN-201ENST00000295718 L2HGDHQ9H9P8 463 aa16.33■□□□□ 0.2
PTPRN-201ENST00000295718 WWC3Q9ULE0 1092 aa16.33■□□□□ 0.2
PTPRN-201ENST00000295718 CCDC151A5D8V7 595 aa16.32■□□□□ 0.2
PTPRN-201ENST00000295718 ATP1A2P50993 1020 aa16.32■□□□□ 0.2
PTPRN-201ENST00000295718 CASP8Q14790 479 aa16.32■□□□□ 0.2
PTPRN-201ENST00000295718 HDAC6Q9UBN7 1215 aa16.32■□□□□ 0.2
PTPRN-201ENST00000295718 ZMYM6O95789 1325 aa16.32■□□□□ 0.2
PTPRN-201ENST00000295718 SH3TC1Q8TE82 1336 aa16.32■□□□□ 0.2
PTPRN-201ENST00000295718 ARHGAP31Q2M1Z3 1444 aa16.32■□□□□ 0.2
PTPRN-201ENST00000295718 PPLO60437 1756 aa16.32■□□□□ 0.2
PTPRN-201ENST00000295718 PHKG2P15735 406 aa16.32■□□□□ 0.2
PTPRN-201ENST00000295718 CCT5P48643 541 aa16.32■□□□□ 0.2
PTPRN-201ENST00000295718 REXO1L1PQ8IX06 675 aa16.32■□□□□ 0.2
PTPRN-201ENST00000295718 FAM76AQ8TAV0 307 aa16.32■□□□□ 0.2
PTPRN-201ENST00000295718 FEZ2Q9UHY8 353 aaPredicted RBP16.32■□□□□ 0.2
PTPRN-201ENST00000295718 MYO6Q9UM54 1294 aa16.32■□□□□ 0.2
PTPRN-201ENST00000295718 A0A0U1RQJ8 604 aa16.32■□□□□ 0.2
PTPRN-201ENST00000295718 SLC5A1P13866 664 aa16.32■□□□□ 0.2
PTPRN-201ENST00000295718 OXER1Q8TDS5 423 aa16.32■□□□□ 0.2
PTPRN-201ENST00000295718 CCDC42Q96M95 316 aa16.32■□□□□ 0.2
PTPRN-201ENST00000295718 SAMM50Q9Y512 469 aa16.32■□□□□ 0.2
PTPRN-201ENST00000295718 IRS4O14654 1257 aaPredicted RBP16.31■□□□□ 0.2
PTPRN-201ENST00000295718 USP5P45974 858 aa16.31■□□□□ 0.2
PTPRN-201ENST00000295718 KIF5AQ12840 1032 aa16.31■□□□□ 0.2
PTPRN-201ENST00000295718 KCTD16Q68DU8 428 aa16.31■□□□□ 0.2
PTPRN-201ENST00000295718 SYMPKQ92797 1274 aaKnown RBP16.31■□□□□ 0.2
PTPRN-201ENST00000295718 KRT23Q9C075 422 aa16.31■□□□□ 0.2
PTPRN-201ENST00000295718 ZSWIM5Q9P217 1185 aa16.31■□□□□ 0.2
PTPRN-201ENST00000295718 GOLGA6CA6NDK9 693 aa16.31■□□□□ 0.2
PTPRN-201ENST00000295718 STARD3NLO95772 234 aa16.31■□□□□ 0.2
PTPRN-201ENST00000295718 GOLGA6DP0CG33 693 aa16.31■□□□□ 0.2
PTPRN-201ENST00000295718 VSNL1P62760 191 aa16.31■□□□□ 0.2
PTPRN-201ENST00000295718 ATP2B2Q01814 1243 aa16.31■□□□□ 0.2
PTPRN-201ENST00000295718 NCAPHQ15003 741 aa16.31■□□□□ 0.2
PTPRN-201ENST00000295718 GOLGA6AQ9NYA3 693 aa16.31■□□□□ 0.2
PTPRN-201ENST00000295718 TTF2Q9UNY4 1162 aaKnown RBP16.31■□□□□ 0.2
PTPRN-201ENST00000295718 OVOS2A0A0J9YW53 1432 aa16.31■□□□□ 0.2
PTPRN-201ENST00000295718 OVOS2Q6IE36 1432 aa16.31■□□□□ 0.2
PTPRN-201ENST00000295718 KRT86O43790 486 aa16.31■□□□□ 0.2
PTPRN-201ENST00000295718 PDE6AP16499 860 aa16.31■□□□□ 0.2
PTPRN-201ENST00000295718 KRT2P35908 639 aa16.31■□□□□ 0.2
PTPRN-201ENST00000295718 IQUBQ8NA54 791 aa16.31■□□□□ 0.2
PTPRN-201ENST00000295718 NELFBQ8WX92 580 aa16.31■□□□□ 0.2
PTPRN-201ENST00000295718 FAM205CA6NFA0 338 aa16.3■□□□□ 0.2
PTPRN-201ENST00000295718 GOLGA6L10A6NI86 522 aa16.3■□□□□ 0.2
PTPRN-201ENST00000295718 TSPY2A6NKD2 308 aa16.3■□□□□ 0.2
PTPRN-201ENST00000295718 RNF40O75150 1001 aa16.3■□□□□ 0.2
PTPRN-201ENST00000295718 CXCR5P32302 372 aa16.3■□□□□ 0.2
PTPRN-201ENST00000295718 CYP27A1Q02318 531 aa16.3■□□□□ 0.2
PTPRN-201ENST00000295718 TBC1D8BQ0IIM8 1120 aa16.3■□□□□ 0.2
PTPRN-201ENST00000295718 CYP26C1Q6V0L0 522 aa16.3■□□□□ 0.2
PTPRN-201ENST00000295718 TMEM87BQ96K49 555 aa16.3■□□□□ 0.2
PTPRN-201ENST00000295718 LCMT1Q9UIC8 334 aa16.3■□□□□ 0.2
PTPRN-201ENST00000295718 MRFAP1Q9Y605 127 aa16.3■□□□□ 0.2
PTPRN-201ENST00000295718 USO1O60763 962 aaKnown RBP16.3■□□□□ 0.2
PTPRN-201ENST00000295718 RNF41Q9H4P4 317 aaPredicted RBP16.3■□□□□ 0.2
PTPRN-201ENST00000295718 TRIM10Q9UDY6 481 aa16.3■□□□□ 0.2
PTPRN-201ENST00000295718 STX8Q9UNK0 236 aa16.3■□□□□ 0.2
PTPRN-201ENST00000295718 HPDP32754 393 aaPredicted RBP16.3■□□□□ 0.2
PTPRN-201ENST00000295718 IGHMBP2P38935 993 aaKnown RBP16.3■□□□□ 0.2
PTPRN-201ENST00000295718 CDR1P51861 262 aa16.3■□□□□ 0.2
PTPRN-201ENST00000295718 ESR2Q92731 530 aa16.3■□□□□ 0.2
PTPRN-201ENST00000295718 NRKQ7Z2Y5 1582 aa16.3■□□□□ 0.2
PTPRN-201ENST00000295718 ARAP3Q8WWN8 1544 aa16.29■□□□□ 0.2
PTPRN-201ENST00000295718 DEXIO95424 95 aa16.29■□□□□ 0.2
PTPRN-201ENST00000295718 CYLC1P35663 651 aaPredicted RBP16.29■□□□□ 0.2
PTPRN-201ENST00000295718 ASIC1P78348 528 aa16.29■□□□□ 0.2
PTPRN-201ENST00000295718 IQCEQ6IPM2 695 aa16.29■□□□□ 0.2
PTPRN-201ENST00000295718 TMTC1Q8IUR5 882 aa16.29■□□□□ 0.2
PTPRN-201ENST00000295718 ZCRB1Q8TBF4 217 aaKnown RBP16.29■□□□□ 0.2
PTPRN-201ENST00000295718 H3BQF6 201 aa16.29■□□□□ 0.2
PTPRN-201ENST00000295718 PLCD1P51178 756 aa16.29■□□□□ 0.2
PTPRN-201ENST00000295718 PAK1Q13153 545 aa16.29■□□□□ 0.2
PTPRN-201ENST00000295718 RAD9BQ6WBX8 426 aa16.29■□□□□ 0.2
PTPRN-201ENST00000295718 TAX1BP1Q86VP1 789 aa16.29■□□□□ 0.2
PTPRN-201ENST00000295718 ARHGEF25Q86VW2 580 aa16.29■□□□□ 0.2
PTPRN-201ENST00000295718 DNAJC10Q8IXB1 793 aa16.29■□□□□ 0.2
PTPRN-201ENST00000295718 JAKMIP2Q96AA8 810 aa16.29■□□□□ 0.2
PTPRN-201ENST00000295718 GREM2Q9H772 168 aa16.29■□□□□ 0.2
PTPRN-201ENST00000295718 IFNL3Q8IZI9 196 aa16.29■□□□□ 0.2
PTPRN-201ENST00000295718 TC2NQ8N9U0 490 aa16.29■□□□□ 0.2
PTPRN-201ENST00000295718 NPHP4O75161 1426 aaPredicted RBP16.29■□□□□ 0.2
PTPRN-201ENST00000295718 USP32Q8NFA0 1604 aa16.28■□□□□ 0.2
PTPRN-201ENST00000295718 GOLGA6BA6NDN3 693 aa16.28■□□□□ 0.2
PTPRN-201ENST00000295718 NDUFAB1O14561 156 aa16.28■□□□□ 0.2
PTPRN-201ENST00000295718 SPATA1Q5VX52 437 aa16.28■□□□□ 0.2
PTPRN-201ENST00000295718 EXOC4Q96A65 974 aa16.28■□□□□ 0.2
PTPRN-201ENST00000295718 SAR1BQ9Y6B6 198 aa16.28■□□□□ 0.2
PTPRN-201ENST00000295718 PPP6R2O75170 966 aa16.28■□□□□ 0.2
PTPRN-201ENST00000295718 ANTXR2P58335 489 aa16.28■□□□□ 0.2
PTPRN-201ENST00000295718 ZNF654Q8IZM8 581 aa16.28■□□□□ 0.2
PTPRN-201ENST00000295718 BCAS4Q8TDM0 211 aa16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms