RNA–Protein interactions for RNA: ENST00000288344.14

HMGN1-201, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 1,303 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-201ENST00000288344 IGF2BP3O00425 579 aaKnown RBP eCLIP11.1□□□□□ -0.63
HMGN1-201ENST00000288344 MX1P20591 662 aa11.1□□□□□ -0.63
HMGN1-201ENST00000288344 INHBEP58166 350 aa11.1□□□□□ -0.63
HMGN1-201ENST00000288344 IRX6P78412 446 aaPredicted RBP11.1□□□□□ -0.63
HMGN1-201ENST00000288344 PICALMQ13492 652 aa11.1□□□□□ -0.63
HMGN1-201ENST00000288344 NOM1Q5C9Z4 860 aaKnown RBP11.1□□□□□ -0.63
HMGN1-201ENST00000288344 COL13A1Q5TAT6 717 aaPredicted RBP11.1□□□□□ -0.63
HMGN1-201ENST00000288344 DCAF15Q66K64 600 aa11.1□□□□□ -0.63
HMGN1-201ENST00000288344 ERO1BQ86YB8 467 aa11.1□□□□□ -0.63
HMGN1-201ENST00000288344 CERS3Q8IU89 383 aa11.1□□□□□ -0.63
HMGN1-201ENST00000288344 FOXP4Q8IVH2 680 aaPredicted RBP11.1□□□□□ -0.63
HMGN1-201ENST00000288344 PLEKHM2Q8IWE5 1019 aa11.1□□□□□ -0.63
HMGN1-201ENST00000288344 OSBP2Q969R2 916 aa11.1□□□□□ -0.63
HMGN1-201ENST00000288344 OPTNQ96CV9 577 aa11.1□□□□□ -0.63
HMGN1-201ENST00000288344 WRNIP1Q96S55 665 aa11.1□□□□□ -0.63
HMGN1-201ENST00000288344 DHX36Q9H2U1 1008 aaKnown RBP11.1□□□□□ -0.63
HMGN1-201ENST00000288344 ELP3Q9H9T3 547 aa11.1□□□□□ -0.63
HMGN1-201ENST00000288344 PI4KBQ9UBF8 816 aa11.1□□□□□ -0.63
HMGN1-201ENST00000288344 PALD1Q9ULE6 856 aa11.1□□□□□ -0.63
HMGN1-201ENST00000288344 MYH1P12882 1939 aa11.1□□□□□ -0.63
HMGN1-201ENST00000288344 SMIM22K7EJ46 135 aa11.09□□□□□ -0.63
HMGN1-201ENST00000288344 IRF6O14896 467 aa11.09□□□□□ -0.63
HMGN1-201ENST00000288344 CA12O43570 354 aa11.09□□□□□ -0.63
HMGN1-201ENST00000288344 CTNND1O60716 968 aaKnown RBP11.09□□□□□ -0.63
HMGN1-201ENST00000288344 GLRX3O76003 335 aaKnown RBP11.09□□□□□ -0.63
HMGN1-201ENST00000288344 CTCFP49711 727 aaPredicted RBP11.09□□□□□ -0.63
HMGN1-201ENST00000288344 PLCD1P51178 756 aa11.09□□□□□ -0.63
HMGN1-201ENST00000288344 PPATQ06203 517 aa11.09□□□□□ -0.63
HMGN1-201ENST00000288344 GRM1Q13255 1194 aa11.09□□□□□ -0.63
HMGN1-201ENST00000288344 TATDN1Q6P1N9 297 aa11.09□□□□□ -0.63
HMGN1-201ENST00000288344 CHD1LQ86WJ1 897 aa11.09□□□□□ -0.63
HMGN1-201ENST00000288344 TICAM2Q86XR7 235 aa11.09□□□□□ -0.63
HMGN1-201ENST00000288344 MAPKAPK5Q8IW41 473 aa11.09□□□□□ -0.63
HMGN1-201ENST00000288344 LCORLQ8N3X6 602 aa11.09□□□□□ -0.63
HMGN1-201ENST00000288344 BRI3BPQ8WY22 251 aa11.09□□□□□ -0.63
HMGN1-201ENST00000288344 STRBPQ96SI9 672 aaKnown RBP11.09□□□□□ -0.63
HMGN1-201ENST00000288344 DCP1AQ9NPI6 582 aaPredicted RBP11.09□□□□□ -0.63
HMGN1-201ENST00000288344 AFG3L2Q9Y4W6 797 aa11.09□□□□□ -0.63
HMGN1-201ENST00000288344 BRCA2P51587 3418 aa11.09□□□□□ -0.63
HMGN1-201ENST00000288344 MAGEB6P1A0A0J9YX57 407 aa11.09□□□□□ -0.63
HMGN1-201ENST00000288344 MANSC4A6NHS7 340 aaPredicted RBP11.09□□□□□ -0.63
HMGN1-201ENST00000288344 FAM196BA6NMK8 535 aa11.09□□□□□ -0.63
HMGN1-201ENST00000288344 FOXP2O15409 715 aa11.09□□□□□ -0.63
HMGN1-201ENST00000288344 PRKAB2O43741 272 aa11.09□□□□□ -0.63
HMGN1-201ENST00000288344 PTPRAP18433 802 aa11.09□□□□□ -0.63
HMGN1-201ENST00000288344 LBX1P52954 281 aa11.09□□□□□ -0.63
HMGN1-201ENST00000288344 PPIL2Q13356 520 aa11.09□□□□□ -0.63
HMGN1-201ENST00000288344 PPP1R15BQ5SWA1 713 aa11.09□□□□□ -0.63
HMGN1-201ENST00000288344 TMEM121BQ9BXQ6 578 aaPredicted RBP11.09□□□□□ -0.63
HMGN1-201ENST00000288344 LNPKQ9C0E8 428 aa11.09□□□□□ -0.63
HMGN1-201ENST00000288344 EHD4Q9H223 541 aa11.09□□□□□ -0.63
HMGN1-201ENST00000288344 HERC5Q9UII4 1024 aaKnown RBP11.09□□□□□ -0.63
HMGN1-201ENST00000288344 CASP8AP2Q9UKL3 1982 aa11.08□□□□□ -0.64
HMGN1-201ENST00000288344 PTPRFP10586 1907 aa11.08□□□□□ -0.64
HMGN1-201ENST00000288344 RNF113AO15541 343 aaKnown RBP11.08□□□□□ -0.64
HMGN1-201ENST00000288344 TRPA1O75762 1119 aa11.08□□□□□ -0.64
HMGN1-201ENST00000288344 CAP2P40123 477 aa11.08□□□□□ -0.64
HMGN1-201ENST00000288344 CAP1Q01518 475 aa11.08□□□□□ -0.64
HMGN1-201ENST00000288344 GPAT2Q6NUI2 795 aa11.08□□□□□ -0.64
HMGN1-201ENST00000288344 SCYL3Q8IZE3 742 aa11.08□□□□□ -0.64
HMGN1-201ENST00000288344 ARMT1Q9H993 441 aa11.08□□□□□ -0.64
HMGN1-201ENST00000288344 GSG1L2A8MUP6 293 aa11.07□□□□□ -0.64
HMGN1-201ENST00000288344 CXCL11O14625 94 aa11.07□□□□□ -0.64
HMGN1-201ENST00000288344 ERC2O15083 957 aa11.07□□□□□ -0.64
HMGN1-201ENST00000288344 SHMT1P34896 483 aa11.07□□□□□ -0.64
HMGN1-201ENST00000288344 DSG2Q14126 1118 aa11.07□□□□□ -0.64
HMGN1-201ENST00000288344 SHROOM1Q2M3G4 852 aaPredicted RBP11.07□□□□□ -0.64
HMGN1-201ENST00000288344 ZMYM1Q5SVZ6 1142 aa11.07□□□□□ -0.64
HMGN1-201ENST00000288344 B4GALNT3Q6L9W6 998 aa11.07□□□□□ -0.64
HMGN1-201ENST00000288344 SDR42E1Q8WUS8 393 aa11.07□□□□□ -0.64
HMGN1-201ENST00000288344 APPBP2Q92624 585 aa11.07□□□□□ -0.64
HMGN1-201ENST00000288344 SEC62Q99442 399 aaKnown RBP11.07□□□□□ -0.64
HMGN1-201ENST00000288344 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.07□□□□□ -0.64
HMGN1-201ENST00000288344 EMILIN3Q9NT22 766 aa11.07□□□□□ -0.64
HMGN1-201ENST00000288344 ATP8A2Q9NTI2 1148 aa11.07□□□□□ -0.64
HMGN1-201ENST00000288344 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.07□□□□□ -0.64
HMGN1-201ENST00000288344 TSKSQ9UJT2 592 aa11.07□□□□□ -0.64
HMGN1-201ENST00000288344 CSADQ9Y600 493 aa11.07□□□□□ -0.64
HMGN1-201ENST00000288344 BAZ2AQ9UIF9 1905 aaKnown RBP11.06□□□□□ -0.64
HMGN1-201ENST00000288344 MBD4O95243 580 aa11.06□□□□□ -0.64
HMGN1-201ENST00000288344 ZFYP08048 801 aaPredicted RBP11.06□□□□□ -0.64
HMGN1-201ENST00000288344 GUCY1A2P33402 732 aa11.06□□□□□ -0.64
HMGN1-201ENST00000288344 GTF2A2P52657 109 aa11.06□□□□□ -0.64
HMGN1-201ENST00000288344 C12orf60Q5U649 245 aa11.06□□□□□ -0.64
HMGN1-201ENST00000288344 ZSCAN29Q8IWY8 852 aaPredicted RBP11.06□□□□□ -0.64
HMGN1-201ENST00000288344 FAM43AQ8N2R8 423 aa11.06□□□□□ -0.64
HMGN1-201ENST00000288344 NOL10Q9BSC4 688 aaKnown RBP11.06□□□□□ -0.64
HMGN1-201ENST00000288344 WDR18Q9BV38 432 aa11.06□□□□□ -0.64
HMGN1-201ENST00000288344 BCL11AQ9H165 835 aa11.06□□□□□ -0.64
HMGN1-201ENST00000288344 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.06□□□□□ -0.64
HMGN1-201ENST00000288344 SAP30BPQ9UHR5 308 aaKnown RBP11.06□□□□□ -0.64
HMGN1-201ENST00000288344 DOCK1Q14185 1865 aa11.05□□□□□ -0.64
HMGN1-201ENST00000288344 A0A0G2JLL6 359 aaPredicted RBP11.05□□□□□ -0.64
HMGN1-201ENST00000288344 BTBD19C9JJ37 291 aa11.05□□□□□ -0.64
HMGN1-201ENST00000288344 M0R2C6 588 aa11.05□□□□□ -0.64
HMGN1-201ENST00000288344 TBC1D8O95759 1140 aa11.05□□□□□ -0.64
HMGN1-201ENST00000288344 CYP2D6P10635 497 aa11.05□□□□□ -0.64
HMGN1-201ENST00000288344 SREBF2Q12772 1141 aa11.05□□□□□ -0.64
HMGN1-201ENST00000288344 SBK1Q52WX2 424 aa11.05□□□□□ -0.64
HMGN1-201ENST00000288344 SH3D19Q5HYK7 790 aa11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 102.3 ms