RNA–Protein interactions for RNA: ENST00000265619.6

VAPB-201, Transcript of VAMP associated protein B and C, humanhuman

TSL 2

Gene VAPB, Length 3,596 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPB-201ENST00000265619 FMR1Q06787 632 aaKnown RBP eCLIP9.93□□□□□ -0.82
VAPB-201ENST00000265619 ZC3H12AQ5D1E8 599 aaKnown RBP9.93□□□□□ -0.82
VAPB-201ENST00000265619 MEX3CQ5U5Q3 659 aaKnown RBP9.93□□□□□ -0.82
VAPB-201ENST00000265619 ADALQ6DHV7 355 aa9.93□□□□□ -0.82
VAPB-201ENST00000265619 CCDC129Q6ZRS4 1044 aa9.93□□□□□ -0.82
VAPB-201ENST00000265619 SMARCC2Q8TAQ2 1214 aa9.93□□□□□ -0.82
VAPB-201ENST00000265619 ARL8AQ96BM9 186 aa9.93□□□□□ -0.82
VAPB-201ENST00000265619 ZBTB10Q96DT7 871 aa9.93□□□□□ -0.82
VAPB-201ENST00000265619 MED15Q96RN5 788 aa9.93□□□□□ -0.82
VAPB-201ENST00000265619 FAM107BQ9H098 131 aa9.93□□□□□ -0.82
VAPB-201ENST00000265619 CTAGE15A4D2H0 777 aa9.93□□□□□ -0.82
VAPB-201ENST00000265619 ANKRD33BA6NCL7 494 aa9.93□□□□□ -0.82
VAPB-201ENST00000265619 IKBKBO14920 756 aa9.93□□□□□ -0.82
VAPB-201ENST00000265619 CTAGE8P0CG41 777 aa9.93□□□□□ -0.82
VAPB-201ENST00000265619 PFKFB1P16118 471 aa9.93□□□□□ -0.82
VAPB-201ENST00000265619 MARCKSP29966 332 aaPredicted RBP9.93□□□□□ -0.82
VAPB-201ENST00000265619 CTAGE6Q86UF2 777 aa9.93□□□□□ -0.82
VAPB-201ENST00000265619 CTAGE4Q8IX94 777 aa9.93□□□□□ -0.82
VAPB-201ENST00000265619 AMOTL1Q8IY63 956 aa9.93□□□□□ -0.82
VAPB-201ENST00000265619 LINC00301Q8NCQ3 95 aa9.93□□□□□ -0.82
VAPB-201ENST00000265619 COG1Q8WTW3 980 aa9.93□□□□□ -0.82
VAPB-201ENST00000265619 ACBD3Q9H3P7 528 aa9.93□□□□□ -0.82
VAPB-201ENST00000265619 SOS2Q07890 1332 aaPredicted RBP9.93□□□□□ -0.82
VAPB-201ENST00000265619 ENO4A6NNW6 628 aa9.93□□□□□ -0.82
VAPB-201ENST00000265619 KIF3CO14782 793 aa9.93□□□□□ -0.82
VAPB-201ENST00000265619 RDXP35241 583 aaKnown RBP9.93□□□□□ -0.82
VAPB-201ENST00000265619 ATP1A2P50993 1020 aa9.93□□□□□ -0.82
VAPB-201ENST00000265619 MRPL12P52815 198 aaKnown RBP9.93□□□□□ -0.82
VAPB-201ENST00000265619 MYL5Q02045 173 aa9.93□□□□□ -0.82
VAPB-201ENST00000265619 ZNF827Q17R98 1081 aa9.93□□□□□ -0.82
VAPB-201ENST00000265619 OTUD6BQ8N6M0 293 aa9.93□□□□□ -0.82
VAPB-201ENST00000265619 SLC40A1Q9NP59 571 aa9.93□□□□□ -0.82
VAPB-201ENST00000265619 ASAP1Q9ULH1 1129 aa9.93□□□□□ -0.82
VAPB-201ENST00000265619 MYH8P13535 1937 aa9.92□□□□□ -0.82
VAPB-201ENST00000265619 MYO1BO43795 1136 aa9.92□□□□□ -0.82
VAPB-201ENST00000265619 UPP2O95045 317 aa9.92□□□□□ -0.82
VAPB-201ENST00000265619 PSMA5P28066 241 aa9.92□□□□□ -0.82
VAPB-201ENST00000265619 STOX1Q6ZVD7 989 aa9.92□□□□□ -0.82
VAPB-201ENST00000265619 CHST3Q7LGC8 479 aa9.92□□□□□ -0.82
VAPB-201ENST00000265619 CCDC13Q8IYE1 715 aa9.92□□□□□ -0.82
VAPB-201ENST00000265619 RUFY2Q8WXA3 655 aa9.92□□□□□ -0.82
VAPB-201ENST00000265619 DCAF5Q96JK2 942 aa9.92□□□□□ -0.82
VAPB-201ENST00000265619 MMS19Q96T76 1030 aa9.92□□□□□ -0.82
VAPB-201ENST00000265619 MEFVO15553 781 aaPredicted RBP9.92□□□□□ -0.82
VAPB-201ENST00000265619 TOM1O60784 492 aa9.92□□□□□ -0.82
VAPB-201ENST00000265619 NAA25Q14CX7 972 aa9.92□□□□□ -0.82
VAPB-201ENST00000265619 TTMPQ5BVD1 217 aa9.92□□□□□ -0.82
VAPB-201ENST00000265619 WDR93Q6P2C0 686 aa9.92□□□□□ -0.82
VAPB-201ENST00000265619 POTEB2H3BUK9 544 aa9.91□□□□□ -0.82
VAPB-201ENST00000265619 GLRX3O76003 335 aaKnown RBP9.91□□□□□ -0.82
VAPB-201ENST00000265619 CCDC175P0C221 793 aa9.91□□□□□ -0.82
VAPB-201ENST00000265619 APBA1Q02410 837 aa9.91□□□□□ -0.82
VAPB-201ENST00000265619 NEXNQ0ZGT2 675 aa9.91□□□□□ -0.82
VAPB-201ENST00000265619 CRYMQ14894 314 aa9.91□□□□□ -0.82
VAPB-201ENST00000265619 FAM98CQ17RN3 349 aaKnown RBP9.91□□□□□ -0.82
VAPB-201ENST00000265619 CEP85LQ5SZL2 805 aa9.91□□□□□ -0.82
VAPB-201ENST00000265619 MICAL1Q8TDZ2 1067 aa9.91□□□□□ -0.82
VAPB-201ENST00000265619 SELENOOQ9BVL4 669 aa9.91□□□□□ -0.82
VAPB-201ENST00000265619 IRAK4Q9NWZ3 460 aa9.91□□□□□ -0.82
VAPB-201ENST00000265619 XIRP1Q702N8 1843 aaKnown RBP9.91□□□□□ -0.82
VAPB-201ENST00000265619 CTAGE9A4FU28 777 aa9.91□□□□□ -0.82
VAPB-201ENST00000265619 MPHOSPH10O00566 681 aaKnown RBP9.91□□□□□ -0.82
VAPB-201ENST00000265619 NDUFAB1O14561 156 aa9.91□□□□□ -0.82
VAPB-201ENST00000265619 SEC24CP53992 1094 aa9.91□□□□□ -0.82
VAPB-201ENST00000265619 IRX1P78414 480 aaPredicted RBP9.91□□□□□ -0.82
VAPB-201ENST00000265619 AMPD2Q01433 879 aa9.91□□□□□ -0.82
VAPB-201ENST00000265619 PPFIA1Q13136 1202 aa9.91□□□□□ -0.82
VAPB-201ENST00000265619 ANKRD1Q15327 319 aa9.91□□□□□ -0.82
VAPB-201ENST00000265619 EZH2Q15910 746 aaKnown RBP9.91□□□□□ -0.82
VAPB-201ENST00000265619 RNF187Q5TA31 235 aaPredicted RBP9.91□□□□□ -0.82
VAPB-201ENST00000265619 NBPF10Q6P3W6 841 aaKnown RBP9.91□□□□□ -0.82
VAPB-201ENST00000265619 CAPZA3Q96KX2 299 aa9.91□□□□□ -0.82
VAPB-201ENST00000265619 SCLT1Q96NL6 688 aa9.91□□□□□ -0.82
VAPB-201ENST00000265619 SH3GL2Q99962 352 aa9.91□□□□□ -0.82
VAPB-201ENST00000265619 SAMSN1Q9NSI8 373 aaKnown RBP9.91□□□□□ -0.82
VAPB-201ENST00000265619 RTEL1Q9NZ71 1219 aa9.91□□□□□ -0.82
VAPB-201ENST00000265619 GOLGA6L9A6NEM1 432 aa9.91□□□□□ -0.82
VAPB-201ENST00000265619 KIF28PB7ZC32 967 aa9.91□□□□□ -0.82
VAPB-201ENST00000265619 RNF225M0QZC1 329 aaPredicted RBP9.91□□□□□ -0.82
VAPB-201ENST00000265619 FDPSP14324 419 aaKnown RBP9.91□□□□□ -0.82
VAPB-201ENST00000265619 GCKP35557 465 aa9.91□□□□□ -0.82
VAPB-201ENST00000265619 USP14P54578 494 aa9.91□□□□□ -0.82
VAPB-201ENST00000265619 RBL2Q08999 1139 aa9.91□□□□□ -0.82
VAPB-201ENST00000265619 KCTD16Q68DU8 428 aa9.91□□□□□ -0.82
VAPB-201ENST00000265619 SPECC1LQ69YQ0 1117 aa9.91□□□□□ -0.82
VAPB-201ENST00000265619 VIPAS39Q9H9C1 493 aa9.91□□□□□ -0.82
VAPB-201ENST00000265619 MARF1Q9Y4F3 1742 aaKnown RBP9.91□□□□□ -0.82
VAPB-201ENST00000265619 SHTN1A0MZ66 631 aa9.9□□□□□ -0.82
VAPB-201ENST00000265619 KIF5CO60282 957 aa9.9□□□□□ -0.82
VAPB-201ENST00000265619 ZEB2O60315 1214 aa9.9□□□□□ -0.82
VAPB-201ENST00000265619 DDX58O95786 925 aaKnown RBP9.9□□□□□ -0.82
VAPB-201ENST00000265619 STK38Q15208 465 aa9.9□□□□□ -0.82
VAPB-201ENST00000265619 CCDC40Q4G0X9 1142 aa9.9□□□□□ -0.82
VAPB-201ENST00000265619 UBE3BQ7Z3V4 1068 aa9.9□□□□□ -0.82
VAPB-201ENST00000265619 RAB11FIP4Q86YS3 637 aa9.9□□□□□ -0.82
VAPB-201ENST00000265619 CCDC8Q9H0W5 538 aaPredicted RBP9.9□□□□□ -0.82
VAPB-201ENST00000265619 BOLA2Q9H3K6 86 aa9.9□□□□□ -0.82
VAPB-201ENST00000265619 GPHNQ9NQX3 736 aaPredicted RBP9.9□□□□□ -0.82
VAPB-201ENST00000265619 ETAA1Q9NY74 926 aa9.9□□□□□ -0.82
VAPB-201ENST00000265619 TPX2Q9ULW0 747 aaKnown RBP9.9□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms