RNA–Protein interactions for RNA: ENST00000264555.9

PHRF1-201, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PHRF1, Length 5,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-201ENST00000264555 JDP2Q8WYK2 163 aa18.81■□□□□ 0.6
PHRF1-201ENST00000264555 SEMA3EO15041 775 aa18.81■□□□□ 0.6
PHRF1-201ENST00000264555 RPL13P26373 211 aaKnown RBP18.81■□□□□ 0.6
PHRF1-201ENST00000264555 SELENOOQ9BVL4 669 aa18.81■□□□□ 0.6
PHRF1-201ENST00000264555 ERO1AQ96HE7 468 aa18.8■□□□□ 0.6
PHRF1-201ENST00000264555 ATP10DQ9P241 1426 aa18.8■□□□□ 0.6
PHRF1-201ENST00000264555 CSGALNACT2Q8N6G5 542 aa18.8■□□□□ 0.6
PHRF1-201ENST00000264555 LMBR1Q8WVP7 490 aa18.8■□□□□ 0.6
PHRF1-201ENST00000264555 CTNNBL1Q8WYA6 563 aaPredicted RBP18.8■□□□□ 0.6
PHRF1-201ENST00000264555 OSBP2Q969R2 916 aa18.8■□□□□ 0.6
PHRF1-201ENST00000264555 LRWD1Q9UFC0 647 aa18.8■□□□□ 0.6
PHRF1-201ENST00000264555 DDAH1O94760 285 aa18.8■□□□□ 0.6
PHRF1-201ENST00000264555 ARID5AQ03989 594 aa18.8■□□□□ 0.6
PHRF1-201ENST00000264555 RNF216Q9NWF9 866 aaPredicted RBP18.8■□□□□ 0.6
PHRF1-201ENST00000264555 CRB1P82279 1406 aa18.8■□□□□ 0.6
PHRF1-201ENST00000264555 TRAF5O00463 557 aa18.79■□□□□ 0.6
PHRF1-201ENST00000264555 HAUS3Q68CZ6 603 aa18.79■□□□□ 0.6
PHRF1-201ENST00000264555 CMTR1Q8N1G2 835 aaKnown RBP18.79■□□□□ 0.6
PHRF1-201ENST00000264555 C17orf53Q8N3J3 647 aaPredicted RBP18.79■□□□□ 0.6
PHRF1-201ENST00000264555 CARMIL3Q8ND23 1372 aa18.79■□□□□ 0.6
PHRF1-201ENST00000264555 ARHGAP6O43182 974 aa18.79■□□□□ 0.6
PHRF1-201ENST00000264555 NRKQ7Z2Y5 1582 aa18.79■□□□□ 0.6
PHRF1-201ENST00000264555 MAPK8IP1Q9UQF2 711 aa18.79■□□□□ 0.6
PHRF1-201ENST00000264555 KIDINS220Q9ULH0 1771 aa18.79■□□□□ 0.6
PHRF1-201ENST00000264555 TUBBP07437 444 aa18.79■□□□□ 0.6
PHRF1-201ENST00000264555 RBM6P78332 1123 aaKnown RBP18.79■□□□□ 0.6
PHRF1-201ENST00000264555 EPHA10Q5JZY3 1008 aa18.79■□□□□ 0.6
PHRF1-201ENST00000264555 USPL1Q5W0Q7 1092 aa18.79■□□□□ 0.6
PHRF1-201ENST00000264555 TTF2Q9UNY4 1162 aaKnown RBP18.79■□□□□ 0.6
PHRF1-201ENST00000264555 MYO3AQ8NEV4 1616 aa18.79■□□□□ 0.6
PHRF1-201ENST00000264555 GOLGA6L10A0A0M3HER8 536 aa18.79■□□□□ 0.6
PHRF1-201ENST00000264555 GSTTP1A0A1W2PQM5 241 aa18.79■□□□□ 0.6
PHRF1-201ENST00000264555 MFSD14BQ5SR56 506 aa18.79■□□□□ 0.6
PHRF1-201ENST00000264555 APOA5Q6Q788 366 aa18.79■□□□□ 0.6
PHRF1-201ENST00000264555 CYP26C1Q6V0L0 522 aa18.79■□□□□ 0.6
PHRF1-201ENST00000264555 CLTCQ00610 1675 aaKnown RBP18.79■□□□□ 0.6
PHRF1-201ENST00000264555 ATP2B4P23634 1241 aa18.78■□□□□ 0.6
PHRF1-201ENST00000264555 TSGA10Q9BZW7 698 aa18.78■□□□□ 0.6
PHRF1-201ENST00000264555 XPO4Q9C0E2 1151 aaKnown RBP18.78■□□□□ 0.6
PHRF1-201ENST00000264555 BTBD18B2RXH4 712 aa18.78■□□□□ 0.6
PHRF1-201ENST00000264555 ALDH1B1P30837 517 aa18.78■□□□□ 0.6
PHRF1-201ENST00000264555 CLIC4Q9Y696 253 aa18.78■□□□□ 0.6
PHRF1-201ENST00000264555 ARHGEF10LQ9HCE6 1279 aa18.78■□□□□ 0.6
PHRF1-201ENST00000264555 IQSEC2Q5JU85 1478 aa18.78■□□□□ 0.6
PHRF1-201ENST00000264555 ZNF500O60304 480 aaPredicted RBP18.78■□□□□ 0.6
PHRF1-201ENST00000264555 PRPHP41219 470 aa18.78■□□□□ 0.6
PHRF1-201ENST00000264555 SLC1A4P43007 532 aa18.78■□□□□ 0.6
PHRF1-201ENST00000264555 CCDC122Q5T0U0 273 aa18.78■□□□□ 0.6
PHRF1-201ENST00000264555 PLVAPQ9BX97 442 aa18.78■□□□□ 0.6
PHRF1-201ENST00000264555 CCDC113Q9H0I3 377 aa18.78■□□□□ 0.6
PHRF1-201ENST00000264555 LARGE1O95461 756 aa18.78■□□□□ 0.6
PHRF1-201ENST00000264555 DYDC1Q8WWB3 177 aa18.78■□□□□ 0.6
PHRF1-201ENST00000264555 PUS7LQ9H0K6 701 aaKnown RBP18.78■□□□□ 0.6
PHRF1-201ENST00000264555 CALCOCO1Q9P1Z2 691 aa18.78■□□□□ 0.6
PHRF1-201ENST00000264555 GCOM1H8Y6P7 765 aaPredicted RBP18.77■□□□□ 0.6
PHRF1-201ENST00000264555 MYZAPP0CAP1 466 aa18.77■□□□□ 0.6
PHRF1-201ENST00000264555 NDUFA8P51970 172 aa18.77■□□□□ 0.6
PHRF1-201ENST00000264555 REXO1Q8N1G1 1221 aaKnown RBP18.77■□□□□ 0.6
PHRF1-201ENST00000264555 MYRIPQ8NFW9 859 aa18.77■□□□□ 0.6
PHRF1-201ENST00000264555 ATP8A2Q9NTI2 1148 aa18.77■□□□□ 0.6
PHRF1-201ENST00000264555 STK24Q9Y6E0 443 aa18.77■□□□□ 0.6
PHRF1-201ENST00000264555 PTPRUQ92729 1446 aa18.77■□□□□ 0.6
PHRF1-201ENST00000264555 PIK3C2BO00750 1634 aa18.77■□□□□ 0.6
PHRF1-201ENST00000264555 ZNF804BA4D1E1 1349 aa18.77■□□□□ 0.6
PHRF1-201ENST00000264555 MACROD2A1Z1Q3 448 aa18.77■□□□□ 0.6
PHRF1-201ENST00000264555 BCCIPQ9P287 314 aaKnown RBP eCLIP18.77■□□□□ 0.6
PHRF1-201ENST00000264555 H0YIN7 160 aa18.77■□□□□ 0.6
PHRF1-201ENST00000264555 KIAA0753Q2KHM9 967 aa18.77■□□□□ 0.6
PHRF1-201ENST00000264555 RBM26Q5T8P6 1007 aaKnown RBP18.77■□□□□ 0.6
PHRF1-201ENST00000264555 BLIDQ8IZY5 108 aa18.77■□□□□ 0.6
PHRF1-201ENST00000264555 NUP58Q9BVL2 599 aa18.77■□□□□ 0.6
PHRF1-201ENST00000264555 SEC31BQ9NQW1 1179 aa18.77■□□□□ 0.6
PHRF1-201ENST00000264555 RIOK3O14730 519 aaKnown RBP18.77■□□□□ 0.59
PHRF1-201ENST00000264555 HSF2BPO75031 334 aa18.77■□□□□ 0.59
PHRF1-201ENST00000264555 CABP7Q86V35 215 aa18.77■□□□□ 0.59
PHRF1-201ENST00000264555 WWC3Q9ULE0 1092 aa18.77■□□□□ 0.59
PHRF1-201ENST00000264555 MCM6Q14566 821 aa18.76■□□□□ 0.59
PHRF1-201ENST00000264555 CALCRLQ16602 461 aa18.76■□□□□ 0.59
PHRF1-201ENST00000264555 PNMA1Q8ND90 353 aa18.76■□□□□ 0.59
PHRF1-201ENST00000264555 TTLL11Q8NHH1 800 aa18.76■□□□□ 0.59
PHRF1-201ENST00000264555 POLR3EQ9NVU0 708 aa18.76■□□□□ 0.59
PHRF1-201ENST00000264555 AGLP35573 1532 aa18.76■□□□□ 0.59
PHRF1-201ENST00000264555 ZC3H13Q5T200 1668 aaKnown RBP18.76■□□□□ 0.59
PHRF1-201ENST00000264555 SCG2P13521 617 aa18.76■□□□□ 0.59
PHRF1-201ENST00000264555 TUBB2AQ13885 445 aa18.76■□□□□ 0.59
PHRF1-201ENST00000264555 SLC39A14Q15043 492 aa18.76■□□□□ 0.59
PHRF1-201ENST00000264555 KRBA2Q6ZNG9 492 aa18.76■□□□□ 0.59
PHRF1-201ENST00000264555 MAATS1Q7Z4T9 603 aa18.76■□□□□ 0.59
PHRF1-201ENST00000264555 SNX29Q8TEQ0 813 aa18.76■□□□□ 0.59
PHRF1-201ENST00000264555 TUBB2BQ9BVA1 445 aa18.76■□□□□ 0.59
PHRF1-201ENST00000264555 CCDC94Q9BW85 323 aaPredicted RBP18.76■□□□□ 0.59
PHRF1-201ENST00000264555 PUF60Q9UHX1 559 aaKnown RBP18.76■□□□□ 0.59
PHRF1-201ENST00000264555 TRIML1Q8N9V2 468 aa18.76■□□□□ 0.59
PHRF1-201ENST00000264555 MRFAP1L1Q96HT8 127 aa18.76■□□□□ 0.59
PHRF1-201ENST00000264555 OVOS2A0A0J9YW53 1432 aa18.76■□□□□ 0.59
PHRF1-201ENST00000264555 OVOS2Q6IE36 1432 aa18.76■□□□□ 0.59
PHRF1-201ENST00000264555 GTF2F1P35269 517 aaKnown RBP eCLIP18.76■□□□□ 0.59
PHRF1-201ENST00000264555 PI16Q6UXB8 463 aa18.76■□□□□ 0.59
PHRF1-201ENST00000264555 TMTC1Q8IUR5 882 aa18.76■□□□□ 0.59
PHRF1-201ENST00000264555 SMCO2A6NFE2 343 aa18.75■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms