RNA–Protein interactions for RNA: ENST00000264039.6

GPC1-201, Transcript of glypican 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GPC1, Length 3,713 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-201ENST00000264039 MSL1Q68DK7 614 aa18.3■□□□□ 0.52
GPC1-201ENST00000264039 FXR1P51114 621 aaKnown RBP eCLIP18.29■□□□□ 0.52
GPC1-201ENST00000264039 TUBB4BP68371 445 aa18.29■□□□□ 0.52
GPC1-201ENST00000264039 NR5A1Q13285 461 aa18.29■□□□□ 0.52
GPC1-201ENST00000264039 SF3B2Q13435 895 aaKnown RBP18.29■□□□□ 0.52
GPC1-201ENST00000264039 C8orf74Q6P047 294 aa18.29■□□□□ 0.52
GPC1-201ENST00000264039 MICAL1Q8TDZ2 1067 aa18.29■□□□□ 0.52
GPC1-201ENST00000264039 RAPGEF4Q8WZA2 1011 aa18.29■□□□□ 0.52
GPC1-201ENST00000264039 NAPBQ9H115 298 aa18.29■□□□□ 0.52
GPC1-201ENST00000264039 IFFO1Q0D2I5 559 aa18.29■□□□□ 0.52
GPC1-201ENST00000264039 CHP1Q99653 195 aa18.29■□□□□ 0.52
GPC1-201ENST00000264039 BPIFA3Q9BQP9 254 aa18.29■□□□□ 0.52
GPC1-201ENST00000264039 GOPCQ9HD26 462 aa18.29■□□□□ 0.52
GPC1-201ENST00000264039 CEP131Q9UPN4 1083 aa18.29■□□□□ 0.52
GPC1-201ENST00000264039 FLT4P35916 1363 aa18.28■□□□□ 0.52
GPC1-201ENST00000264039 UBE2Q2LH0YL09 131 aa18.28■□□□□ 0.52
GPC1-201ENST00000264039 MAP2K7O14733 419 aa18.28■□□□□ 0.52
GPC1-201ENST00000264039 KANK3Q6NY19 840 aa18.28■□□□□ 0.52
GPC1-201ENST00000264039 ILDR1Q86SU0 546 aaPredicted RBP18.28■□□□□ 0.52
GPC1-201ENST00000264039 CNPY4Q8N129 248 aa18.28■□□□□ 0.52
GPC1-201ENST00000264039 CCDC196A0A1B0GTZ2 297 aa18.28■□□□□ 0.52
GPC1-201ENST00000264039 SKAP2O75563 359 aaPredicted RBP18.28■□□□□ 0.52
GPC1-201ENST00000264039 GUCY1A3Q02108 690 aa18.28■□□□□ 0.52
GPC1-201ENST00000264039 TBC1D2BQ9UPU7 963 aa18.28■□□□□ 0.52
GPC1-201ENST00000264039 ESYT3A0FGR9 886 aa18.28■□□□□ 0.52
GPC1-201ENST00000264039 TLDC2A0PJX2 215 aa18.28■□□□□ 0.52
GPC1-201ENST00000264039 ATP1A1P05023 1023 aaKnown RBP18.28■□□□□ 0.52
GPC1-201ENST00000264039 USP49Q70CQ1 688 aa18.28■□□□□ 0.52
GPC1-201ENST00000264039 PROSER2Q86WR7 435 aaPredicted RBP18.28■□□□□ 0.52
GPC1-201ENST00000264039 COG1Q8WTW3 980 aa18.28■□□□□ 0.52
GPC1-201ENST00000264039 ARHGAP25P42331 645 aa18.27■□□□□ 0.52
GPC1-201ENST00000264039 KIFC2Q96AC6 838 aa18.27■□□□□ 0.52
GPC1-201ENST00000264039 DDX24Q9GZR7 859 aaKnown RBP eCLIP18.27■□□□□ 0.52
GPC1-201ENST00000264039 CNNM1Q9NRU3 951 aa18.27■□□□□ 0.52
GPC1-201ENST00000264039 TACC1O75410 805 aa18.27■□□□□ 0.52
GPC1-201ENST00000264039 GRIN1Q05586 938 aa18.27■□□□□ 0.52
GPC1-201ENST00000264039 BIRC2Q13490 618 aa18.27■□□□□ 0.52
GPC1-201ENST00000264039 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP18.27■□□□□ 0.52
GPC1-201ENST00000264039 MMRN2Q9H8L6 949 aa18.27■□□□□ 0.52
GPC1-201ENST00000264039 SMARCAL1Q9NZC9 954 aa18.27■□□□□ 0.52
GPC1-201ENST00000264039 ANGEL1Q9UNK9 670 aaKnown RBP18.27■□□□□ 0.52
GPC1-201ENST00000264039 RIPOR2Q9Y4F9 1068 aa18.27■□□□□ 0.52
GPC1-201ENST00000264039 MFAP3LO75121 409 aa18.27■□□□□ 0.51
GPC1-201ENST00000264039 SEC24CP53992 1094 aa18.27■□□□□ 0.51
GPC1-201ENST00000264039 KRT83P78385 493 aa18.27■□□□□ 0.51
GPC1-201ENST00000264039 PI16Q6UXB8 463 aa18.27■□□□□ 0.51
GPC1-201ENST00000264039 FOXP4Q8IVH2 680 aaPredicted RBP18.27■□□□□ 0.51
GPC1-201ENST00000264039 INCENPQ9NQS7 918 aa18.27■□□□□ 0.51
GPC1-201ENST00000264039 HOXC9P31274 260 aa18.26■□□□□ 0.51
GPC1-201ENST00000264039 CACNA2D4Q7Z3S7 1137 aa18.26■□□□□ 0.51
GPC1-201ENST00000264039 ZNF622Q969S3 477 aaKnown RBP eCLIP18.26■□□□□ 0.51
GPC1-201ENST00000264039 EPSTI1Q96J88 318 aa18.26■□□□□ 0.51
GPC1-201ENST00000264039 CCDC43Q96MW1 224 aaKnown RBP18.26■□□□□ 0.51
GPC1-201ENST00000264039 NAA15Q9BXJ9 866 aaKnown RBP18.26■□□□□ 0.51
GPC1-201ENST00000264039 TRIM75PA6NK02 468 aa18.26■□□□□ 0.51
GPC1-201ENST00000264039 CYB5RLQ6IPT4 315 aa18.26■□□□□ 0.51
GPC1-201ENST00000264039 KLHL7Q8IXQ5 586 aa18.26■□□□□ 0.51
GPC1-201ENST00000264039 KIF1BO60333 1816 aa18.26■□□□□ 0.51
GPC1-201ENST00000264039 NNTQ13423 1086 aa18.26■□□□□ 0.51
GPC1-201ENST00000264039 TUBB2AQ13885 445 aa18.26■□□□□ 0.51
GPC1-201ENST00000264039 SLC4A8Q2Y0W8 1093 aa18.26■□□□□ 0.51
GPC1-201ENST00000264039 TUBB2BQ9BVA1 445 aa18.26■□□□□ 0.51
GPC1-201ENST00000264039 HPCAL4Q9UM19 191 aa18.26■□□□□ 0.51
GPC1-201ENST00000264039 BUB1BO60566 1050 aaPredicted RBP18.25■□□□□ 0.51
GPC1-201ENST00000264039 CLTAP09496 248 aa18.25■□□□□ 0.51
GPC1-201ENST00000264039 GCKRQ14397 625 aa18.25■□□□□ 0.51
GPC1-201ENST00000264039 EHBP1Q8NDI1 1231 aa18.25■□□□□ 0.51
GPC1-201ENST00000264039 ENOX1Q8TC92 643 aaKnown RBP18.25■□□□□ 0.51
GPC1-201ENST00000264039 WASF1Q92558 559 aa18.25■□□□□ 0.51
GPC1-201ENST00000264039 CCDC47Q96A33 483 aaKnown RBP18.25■□□□□ 0.51
GPC1-201ENST00000264039 ATP7BP35670 1465 aa18.25■□□□□ 0.51
GPC1-201ENST00000264039 KRT14P02533 472 aa18.25■□□□□ 0.51
GPC1-201ENST00000264039 PLCD1P51178 756 aa18.25■□□□□ 0.51
GPC1-201ENST00000264039 SPATA1Q5VX52 437 aa18.25■□□□□ 0.51
GPC1-201ENST00000264039 PRPF38AQ8NAV1 312 aaKnown RBP18.25■□□□□ 0.51
GPC1-201ENST00000264039 CSRNP2Q9H175 543 aa18.25■□□□□ 0.51
GPC1-201ENST00000264039 HELLSQ9NRZ9 838 aa18.25■□□□□ 0.51
GPC1-201ENST00000264039 GPAA1O43292 621 aa18.25■□□□□ 0.51
GPC1-201ENST00000264039 TBC1D8BQ0IIM8 1120 aa18.25■□□□□ 0.51
GPC1-201ENST00000264039 PPP1R7Q15435 360 aa18.25■□□□□ 0.51
GPC1-201ENST00000264039 OSBP2Q969R2 916 aa18.25■□□□□ 0.51
GPC1-201ENST00000264039 ALS2CR12Q96Q35 445 aa18.25■□□□□ 0.51
GPC1-201ENST00000264039 INTS13Q9NVM9 706 aa18.25■□□□□ 0.51
GPC1-201ENST00000264039 MAST3O60307 1309 aa18.25■□□□□ 0.51
GPC1-201ENST00000264039 PRR36Q9H6K5 1346 aa18.25■□□□□ 0.51
GPC1-201ENST00000264039 METTL24Q5JXM2 366 aa18.24■□□□□ 0.51
GPC1-201ENST00000264039 OR8K1Q8NGG5 319 aa18.24■□□□□ 0.51
GPC1-201ENST00000264039 CEP89Q96ST8 783 aa18.24■□□□□ 0.51
GPC1-201ENST00000264039 PCDHB6Q9Y5E3 794 aa18.24■□□□□ 0.51
GPC1-201ENST00000264039 CRB1P82279 1406 aa18.24■□□□□ 0.51
GPC1-201ENST00000264039 M0R2C6 588 aa18.24■□□□□ 0.51
GPC1-201ENST00000264039 BUB1O43683 1085 aa18.24■□□□□ 0.51
GPC1-201ENST00000264039 USP14P54578 494 aa18.24■□□□□ 0.51
GPC1-201ENST00000264039 ZC3H6P61129 1189 aaKnown RBP18.24■□□□□ 0.51
GPC1-201ENST00000264039 RTN1Q16799 776 aa18.24■□□□□ 0.51
GPC1-201ENST00000264039 CCDC40Q4G0X9 1142 aa18.24■□□□□ 0.51
GPC1-201ENST00000264039 ARHGEF25Q86VW2 580 aa18.24■□□□□ 0.51
GPC1-201ENST00000264039 IQCA1Q86XH1 822 aa18.24■□□□□ 0.51
GPC1-201ENST00000264039 SMCR8Q8TEV9 937 aaPredicted RBP18.24■□□□□ 0.51
GPC1-201ENST00000264039 KAT2BQ92831 832 aa18.24■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms