RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 BCL2L12Q9HB09 334 aa12.01□□□□□ -0.49
CD44-201ENST00000263398 AATFQ9NY61 560 aaKnown RBP eCLIP12.01□□□□□ -0.49
CD44-201ENST00000263398 ACTN4O43707 911 aaKnown RBP12.01□□□□□ -0.49
CD44-201ENST00000263398 FERP16591 822 aa12.01□□□□□ -0.49
CD44-201ENST00000263398 ARID4AP29374 1257 aaPredicted RBP12.01□□□□□ -0.49
CD44-201ENST00000263398 TTC31Q49AM3 519 aaPredicted RBP12.01□□□□□ -0.49
CD44-201ENST00000263398 HERC4Q5GLZ8 1057 aaPredicted RBP12.01□□□□□ -0.49
CD44-201ENST00000263398 IFT20Q8IY31 132 aa12.01□□□□□ -0.49
CD44-201ENST00000263398 MAP4K1Q92918 833 aa12.01□□□□□ -0.49
CD44-201ENST00000263398 CEP63Q96MT8 703 aa12.01□□□□□ -0.49
CD44-201ENST00000263398 SERTAD1Q9UHV2 236 aa12.01□□□□□ -0.49
CD44-201ENST00000263398 UTP18Q9Y5J1 556 aaKnown RBP eCLIP12.01□□□□□ -0.49
CD44-201ENST00000263398 AATKQ6ZMQ8 1374 aa12□□□□□ -0.49
CD44-201ENST00000263398 PLS1Q14651 629 aa12□□□□□ -0.49
CD44-201ENST00000263398 UTP14CQ5TAP6 766 aaKnown RBP12□□□□□ -0.49
CD44-201ENST00000263398 B4GALNT4Q76KP1 1039 aa12□□□□□ -0.49
CD44-201ENST00000263398 NOSTRINQ8IVI9 506 aa12□□□□□ -0.49
CD44-201ENST00000263398 C8orf37Q96NL8 207 aa12□□□□□ -0.49
CD44-201ENST00000263398 SLF1Q9BQI6 1058 aa12□□□□□ -0.49
CD44-201ENST00000263398 RASSF4Q9H2L5 321 aa12□□□□□ -0.49
CD44-201ENST00000263398 SH2D4AQ9H788 454 aa12□□□□□ -0.49
CD44-201ENST00000263398 COPRSQ9NQ92 184 aa12□□□□□ -0.49
CD44-201ENST00000263398 VPS54Q9P1Q0 977 aa12□□□□□ -0.49
CD44-201ENST00000263398 COMMD10Q9Y6G5 202 aa12□□□□□ -0.49
CD44-201ENST00000263398 ERBB4Q15303 1308 aa12□□□□□ -0.49
CD44-201ENST00000263398 UFL1O94874 794 aa12□□□□□ -0.49
CD44-201ENST00000263398 TRAPPC3LQ5T215 181 aa12□□□□□ -0.49
CD44-201ENST00000263398 NELFBQ8WX92 580 aa12□□□□□ -0.49
CD44-201ENST00000263398 LRRC45Q96CN5 670 aa12□□□□□ -0.49
CD44-201ENST00000263398 IQCDQ96DY2 449 aa12□□□□□ -0.49
CD44-201ENST00000263398 SBDSQ9Y3A5 250 aaKnown RBP eCLIP12□□□□□ -0.49
CD44-201ENST00000263398 ERVV-2B6SEH9 535 aa12□□□□□ -0.49
CD44-201ENST00000263398 NDUFAB1O14561 156 aa12□□□□□ -0.49
CD44-201ENST00000263398 SPOPO43791 374 aa12□□□□□ -0.49
CD44-201ENST00000263398 RBM6P78332 1123 aaKnown RBP12□□□□□ -0.49
CD44-201ENST00000263398 MXRA7P84157 204 aa12□□□□□ -0.49
CD44-201ENST00000263398 PNOCQ13519 176 aa12□□□□□ -0.49
CD44-201ENST00000263398 ASIC2Q16515 512 aa12□□□□□ -0.49
CD44-201ENST00000263398 STAMQ92783 540 aa12□□□□□ -0.49
CD44-201ENST00000263398 SEC62Q99442 399 aaKnown RBP12□□□□□ -0.49
CD44-201ENST00000263398 LSG1Q9H089 658 aaKnown RBP12□□□□□ -0.49
CD44-201ENST00000263398 CCDC87Q9NVE4 849 aa12□□□□□ -0.49
CD44-201ENST00000263398 METP08581 1390 aa12□□□□□ -0.49
CD44-201ENST00000263398 ATP2A2P16615 1042 aaKnown RBP11.99□□□□□ -0.49
CD44-201ENST00000263398 ETF1P62495 437 aaKnown RBP11.99□□□□□ -0.49
CD44-201ENST00000263398 RASEFQ8IZ41 740 aa11.99□□□□□ -0.49
CD44-201ENST00000263398 PPM1EQ8WY54 764 aa11.99□□□□□ -0.49
CD44-201ENST00000263398 SMC6Q96SB8 1091 aa11.99□□□□□ -0.49
CD44-201ENST00000263398 KCNK9Q9NPC2 374 aa11.99□□□□□ -0.49
CD44-201ENST00000263398 BCORL1Q5H9F3 1711 aa11.99□□□□□ -0.49
CD44-201ENST00000263398 TMEM2Q9UHN6 1383 aa11.99□□□□□ -0.49
CD44-201ENST00000263398 GOLGA6CA6NDK9 693 aa11.99□□□□□ -0.49
CD44-201ENST00000263398 GOLGA6DP0CG33 693 aa11.99□□□□□ -0.49
CD44-201ENST00000263398 ADD1P35611 737 aaKnown RBP11.99□□□□□ -0.49
CD44-201ENST00000263398 FCHSD1Q86WN1 690 aa11.99□□□□□ -0.49
CD44-201ENST00000263398 CEP57Q86XR8 500 aa11.99□□□□□ -0.49
CD44-201ENST00000263398 TRIML1Q8N9V2 468 aa11.99□□□□□ -0.49
CD44-201ENST00000263398 CCDC97Q96F63 343 aaPredicted RBP11.99□□□□□ -0.49
CD44-201ENST00000263398 RBM17Q96I25 401 aaKnown RBP11.99□□□□□ -0.49
CD44-201ENST00000263398 RPGRIP1Q96KN7 1286 aa11.99□□□□□ -0.49
CD44-201ENST00000263398 GOLGA6AQ9NYA3 693 aa11.99□□□□□ -0.49
CD44-201ENST00000263398 ZBTB21Q9ULJ3 1066 aa11.99□□□□□ -0.49
CD44-201ENST00000263398 ZFYVE16Q7Z3T8 1539 aa11.99□□□□□ -0.49
CD44-201ENST00000263398 NEO1Q92859 1461 aa11.99□□□□□ -0.49
CD44-201ENST00000263398 BACH1O14867 736 aa11.99□□□□□ -0.49
CD44-201ENST00000263398 ADCY7P51828 1080 aa11.99□□□□□ -0.49
CD44-201ENST00000263398 KRBA2Q6ZNG9 492 aa11.99□□□□□ -0.49
CD44-201ENST00000263398 OR8K1Q8NGG5 319 aa11.99□□□□□ -0.49
CD44-201ENST00000263398 NUCKS1Q9H1E3 243 aaKnown RBP11.99□□□□□ -0.49
CD44-201ENST00000263398 STK24Q9Y6E0 443 aa11.99□□□□□ -0.49
CD44-201ENST00000263398 MYOM2P54296 1465 aa11.99□□□□□ -0.49
CD44-201ENST00000263398 CALUO43852 315 aaPredicted RBP11.99□□□□□ -0.49
CD44-201ENST00000263398 TFAP4Q01664 338 aa11.99□□□□□ -0.49
CD44-201ENST00000263398 LRMPQ12912 555 aa11.99□□□□□ -0.49
CD44-201ENST00000263398 CUL4AQ13619 759 aa11.99□□□□□ -0.49
CD44-201ENST00000263398 CABP7Q86V35 215 aa11.99□□□□□ -0.49
CD44-201ENST00000263398 FBXO18Q8NFZ0 1043 aa11.99□□□□□ -0.49
CD44-201ENST00000263398 KIFAP3Q92845 792 aa11.99□□□□□ -0.49
CD44-201ENST00000263398 CSRNP2Q9H175 543 aa11.99□□□□□ -0.49
CD44-201ENST00000263398 TSKSQ9UJT2 592 aa11.99□□□□□ -0.49
CD44-201ENST00000263398 SETDB1Q15047 1291 aa11.98□□□□□ -0.49
CD44-201ENST00000263398 GPR161Q8N6U8 529 aaKnown RBP11.98□□□□□ -0.49
CD44-201ENST00000263398 NKIRAS1Q9NYS0 192 aa11.98□□□□□ -0.49
CD44-201ENST00000263398 PCDHA7Q9UN72 937 aa11.98□□□□□ -0.49
CD44-201ENST00000263398 FGAP02671 866 aa11.98□□□□□ -0.49
CD44-201ENST00000263398 PPARAQ07869 468 aa11.98□□□□□ -0.49
CD44-201ENST00000263398 RUFY4Q6ZNE9 571 aa11.98□□□□□ -0.49
CD44-201ENST00000263398 REXO1Q8N1G1 1221 aaKnown RBP11.98□□□□□ -0.49
CD44-201ENST00000263398 KIAA1524Q8TCG1 905 aa11.98□□□□□ -0.49
CD44-201ENST00000263398 TFCP2L1Q9NZI6 479 aa11.98□□□□□ -0.49
CD44-201ENST00000263398 GGA1Q9UJY5 639 aa11.98□□□□□ -0.49
CD44-201ENST00000263398 MAST3O60307 1309 aa11.98□□□□□ -0.49
CD44-201ENST00000263398 hCG_1642624A0A1W2PR95 340 aa11.98□□□□□ -0.49
CD44-201ENST00000263398 GOLGA6BA6NDN3 693 aa11.98□□□□□ -0.49
CD44-201ENST00000263398 PDE6AP16499 860 aa11.98□□□□□ -0.49
CD44-201ENST00000263398 FNBP1Q96RU3 617 aa11.98□□□□□ -0.49
CD44-201ENST00000263398 PARP3Q9Y6F1 533 aa11.98□□□□□ -0.49
CD44-201ENST00000263398 FLOT1O75955 427 aa11.98□□□□□ -0.49
CD44-201ENST00000263398 ATP5DP30049 168 aa11.98□□□□□ -0.49
CD44-201ENST00000263398 HPDP32754 393 aaPredicted RBP11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms