RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 BICDL1Q6ZP65 573 aa14.41□□□□□ -0.1
LIG1-201ENST00000263274 FBXL16Q8N461 479 aa14.41□□□□□ -0.1
LIG1-201ENST00000263274 IGSF22Q8N9C0 903 aa14.41□□□□□ -0.1
LIG1-201ENST00000263274 GSG1L2A8MUP6 293 aa14.4□□□□□ -0.1
LIG1-201ENST00000263274 DEXIO95424 95 aa14.4□□□□□ -0.1
LIG1-201ENST00000263274 IFNAR1P17181 557 aa14.4□□□□□ -0.1
LIG1-201ENST00000263274 IGHMBP2P38935 993 aaKnown RBP14.4□□□□□ -0.1
LIG1-201ENST00000263274 FILIP1LQ4L180 1135 aa14.4□□□□□ -0.1
LIG1-201ENST00000263274 TRIM65Q6PJ69 517 aa14.4□□□□□ -0.1
LIG1-201ENST00000263274 ACSBG1Q96GR2 724 aa14.4□□□□□ -0.1
LIG1-201ENST00000263274 VPS16Q9H269 839 aa14.4□□□□□ -0.1
LIG1-201ENST00000263274 INTS13Q9NVM9 706 aa14.4□□□□□ -0.1
LIG1-201ENST00000263274 CEP131Q9UPN4 1083 aa14.4□□□□□ -0.1
LIG1-201ENST00000263274 ZNF142P52746 1687 aaPredicted RBP14.4□□□□□ -0.1
LIG1-201ENST00000263274 GYS2P54840 703 aa14.4□□□□□ -0.1
LIG1-201ENST00000263274 MCM6Q14566 821 aa14.4□□□□□ -0.1
LIG1-201ENST00000263274 MLKLQ8NB16 471 aa14.4□□□□□ -0.1
LIG1-201ENST00000263274 TRIM34Q9BYJ4 488 aa14.4□□□□□ -0.1
LIG1-201ENST00000263274 BTG4Q9NY30 223 aa14.4□□□□□ -0.1
LIG1-201ENST00000263274 LAMA4Q16363 1823 aa14.4□□□□□ -0.1
LIG1-201ENST00000263274 TPM1P09493 284 aa14.4□□□□□ -0.1
LIG1-201ENST00000263274 TNNT3P45378 269 aaPredicted RBP14.4□□□□□ -0.1
LIG1-201ENST00000263274 ZNF569Q5MCW4 686 aa14.4□□□□□ -0.1
LIG1-201ENST00000263274 AKR1B15C9JRZ8 316 aaPredicted RBP14.39□□□□□ -0.11
LIG1-201ENST00000263274 PTPREP23469 700 aa14.39□□□□□ -0.11
LIG1-201ENST00000263274 CDC25AP30304 524 aa14.39□□□□□ -0.11
LIG1-201ENST00000263274 N4BP3O15049 544 aa14.39□□□□□ -0.11
LIG1-201ENST00000263274 LIFRP42702 1097 aa14.39□□□□□ -0.11
LIG1-201ENST00000263274 TRIM28Q13263 835 aaKnown RBP14.39□□□□□ -0.11
LIG1-201ENST00000263274 TEX2Q8IWB9 1127 aa14.39□□□□□ -0.11
LIG1-201ENST00000263274 CRACR2BQ8N4Y2 399 aaPredicted RBP14.39□□□□□ -0.11
LIG1-201ENST00000263274 NEK11Q8NG66 645 aa14.39□□□□□ -0.11
LIG1-201ENST00000263274 EEF2KMTQ96G04 330 aa14.39□□□□□ -0.11
LIG1-201ENST00000263274 PLIN2Q99541 437 aa14.39□□□□□ -0.11
LIG1-201ENST00000263274 TACC3Q9Y6A5 838 aa14.39□□□□□ -0.11
LIG1-201ENST00000263274 TNKSO95271 1327 aa14.39□□□□□ -0.11
LIG1-201ENST00000263274 PHLPP2Q6ZVD8 1323 aa14.39□□□□□ -0.11
LIG1-201ENST00000263274 CCDC175P0C221 793 aa14.39□□□□□ -0.11
LIG1-201ENST00000263274 IFIT1BQ5T764 474 aaKnown RBP14.39□□□□□ -0.11
LIG1-201ENST00000263274 RRAGBQ5VZM2 374 aa14.39□□□□□ -0.11
LIG1-201ENST00000263274 TC2NQ8N9U0 490 aa14.39□□□□□ -0.11
LIG1-201ENST00000263274 CARD10Q9BWT7 1032 aa14.39□□□□□ -0.11
LIG1-201ENST00000263274 ARFGAP3Q9NP61 516 aa14.39□□□□□ -0.11
LIG1-201ENST00000263274 EIF4ENIF1Q9NRA8 985 aaKnown RBP14.39□□□□□ -0.11
LIG1-201ENST00000263274 KCNG1Q9UIX4 513 aa14.39□□□□□ -0.11
LIG1-201ENST00000263274 FBXO2Q9UK22 296 aaPredicted RBP14.39□□□□□ -0.11
LIG1-201ENST00000263274 PARP3Q9Y6F1 533 aa14.39□□□□□ -0.11
LIG1-201ENST00000263274 A0A0U1RQJ8 604 aa14.38□□□□□ -0.11
LIG1-201ENST00000263274 RHOXF2BP0C7M4 288 aa14.38□□□□□ -0.11
LIG1-201ENST00000263274 H2AFXP16104 143 aaPredicted RBP14.38□□□□□ -0.11
LIG1-201ENST00000263274 GYG1P46976 350 aa14.38□□□□□ -0.11
LIG1-201ENST00000263274 RBL2Q08999 1139 aa14.38□□□□□ -0.11
LIG1-201ENST00000263274 SGMS1Q86VZ5 419 aa14.38□□□□□ -0.11
LIG1-201ENST00000263274 ATRIPQ8WXE1 791 aa14.38□□□□□ -0.11
LIG1-201ENST00000263274 NUP88Q99567 741 aaPredicted RBP14.38□□□□□ -0.11
LIG1-201ENST00000263274 RHOXF2Q9BQY4 288 aa14.38□□□□□ -0.11
LIG1-201ENST00000263274 SRRTQ9BXP5 876 aaKnown RBP14.38□□□□□ -0.11
LIG1-201ENST00000263274 CTNND2Q9UQB3 1225 aa14.38□□□□□ -0.11
LIG1-201ENST00000263274 TNS3Q68CZ2 1445 aa14.38□□□□□ -0.11
LIG1-201ENST00000263274 KIF5CO60282 957 aa14.38□□□□□ -0.11
LIG1-201ENST00000263274 MCM7P33993 719 aa14.38□□□□□ -0.11
LIG1-201ENST00000263274 PPARAQ07869 468 aa14.38□□□□□ -0.11
LIG1-201ENST00000263274 SKIDA1Q1XH10 827 aa14.38□□□□□ -0.11
LIG1-201ENST00000263274 CCDC93Q567U6 631 aa14.38□□□□□ -0.11
LIG1-201ENST00000263274 RNF41Q9H4P4 317 aaPredicted RBP14.38□□□□□ -0.11
LIG1-201ENST00000263274 BRMS1Q9HCU9 246 aa14.38□□□□□ -0.11
LIG1-201ENST00000263274 FHOD1Q9Y613 1164 aa14.38□□□□□ -0.11
LIG1-201ENST00000263274 EFCAB8A8MWE9 144 aa14.37□□□□□ -0.11
LIG1-201ENST00000263274 FANCGO15287 622 aa14.37□□□□□ -0.11
LIG1-201ENST00000263274 STX10O60499 249 aa14.37□□□□□ -0.11
LIG1-201ENST00000263274 TADA3O75528 432 aa14.37□□□□□ -0.11
LIG1-201ENST00000263274 NOM1Q5C9Z4 860 aaKnown RBP14.37□□□□□ -0.11
LIG1-201ENST00000263274 ESR2Q92731 530 aa14.37□□□□□ -0.11
LIG1-201ENST00000263274 SYMPKQ92797 1274 aaKnown RBP14.37□□□□□ -0.11
LIG1-201ENST00000263274 WTIPA6NIX2 430 aaPredicted RBP14.37□□□□□ -0.11
LIG1-201ENST00000263274 NLRP5P59047 1200 aa14.37□□□□□ -0.11
LIG1-201ENST00000263274 DYNLL1P63167 89 aaKnown RBP14.37□□□□□ -0.11
LIG1-201ENST00000263274 CATIPQ7Z7H3 387 aa14.37□□□□□ -0.11
LIG1-201ENST00000263274 MRPL44Q9H9J2 332 aaKnown RBP14.37□□□□□ -0.11
LIG1-201ENST00000263274 SCN11AQ9UI33 1791 aa14.37□□□□□ -0.11
LIG1-201ENST00000263274 ARFGEF2Q9Y6D5 1785 aa14.37□□□□□ -0.11
LIG1-201ENST00000263274 PLEKHA8P1O95397 391 aa14.37□□□□□ -0.11
LIG1-201ENST00000263274 TFRCP02786 760 aaKnown RBP14.37□□□□□ -0.11
LIG1-201ENST00000263274 TUBB4AP04350 444 aa14.37□□□□□ -0.11
LIG1-201ENST00000263274 PLA2G4AP47712 749 aa14.37□□□□□ -0.11
LIG1-201ENST00000263274 SUSD4Q5VX71 490 aa14.37□□□□□ -0.11
LIG1-201ENST00000263274 KANK3Q6NY19 840 aa14.37□□□□□ -0.11
LIG1-201ENST00000263274 TICAM2Q86XR7 235 aa14.37□□□□□ -0.11
LIG1-201ENST00000263274 ENOX1Q8TC92 643 aaKnown RBP14.37□□□□□ -0.11
LIG1-201ENST00000263274 PARD6BQ9BYG5 372 aa14.37□□□□□ -0.11
LIG1-201ENST00000263274 NIP7Q9Y221 180 aaKnown RBP eCLIP14.37□□□□□ -0.11
LIG1-201ENST00000263274 WDR19Q8NEZ3 1342 aa14.37□□□□□ -0.11
LIG1-201ENST00000263274 SYNRGQ9UMZ2 1314 aa14.37□□□□□ -0.11
LIG1-201ENST00000263274 MAGEB6P1A0A0J9YX57 407 aa14.36□□□□□ -0.11
LIG1-201ENST00000263274 OAS2P29728 719 aaKnown RBP14.36□□□□□ -0.11
LIG1-201ENST00000263274 CASP14P31944 242 aa14.36□□□□□ -0.11
LIG1-201ENST00000263274 KRT2P35908 639 aa14.36□□□□□ -0.11
LIG1-201ENST00000263274 TCRBV5S4A2TA0A5A2 114 aa14.36□□□□□ -0.11
LIG1-201ENST00000263274 EARS2Q5JPH6 523 aaKnown RBP14.36□□□□□ -0.11
LIG1-201ENST00000263274 FAM47AQ5JRC9 791 aa14.36□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms