RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 CPLX3Q8WVH0 158 aa11.52□□□□□ -0.56
LIG3-201ENST00000262327 IRX2Q9BZI1 471 aaPredicted RBP11.52□□□□□ -0.56
LIG3-201ENST00000262327 PCDHB6Q9Y5E3 794 aa11.52□□□□□ -0.56
LIG3-201ENST00000262327 ANKRD36CQ5JPF3 1778 aa11.52□□□□□ -0.57
LIG3-201ENST00000262327 RIC1Q4ADV7 1423 aa11.52□□□□□ -0.57
LIG3-201ENST00000262327 KIF2AO00139 706 aaPredicted RBP11.52□□□□□ -0.57
LIG3-201ENST00000262327 POLR3GO15318 223 aaPredicted RBP11.52□□□□□ -0.57
LIG3-201ENST00000262327 SSRP1Q08945 709 aaKnown RBP11.52□□□□□ -0.57
LIG3-201ENST00000262327 MTF1Q14872 753 aa11.52□□□□□ -0.57
LIG3-201ENST00000262327 TOGARAM2Q6ZUX3 1019 aa11.52□□□□□ -0.57
LIG3-201ENST00000262327 NLRP10Q86W26 655 aa11.52□□□□□ -0.57
LIG3-201ENST00000262327 VSTM4Q8IW00 320 aa11.52□□□□□ -0.57
LIG3-201ENST00000262327 ZNF34Q8IZ26 560 aa11.52□□□□□ -0.57
LIG3-201ENST00000262327 UBXN4Q92575 508 aa11.52□□□□□ -0.57
LIG3-201ENST00000262327 WDR24Q96S15 920 aa11.52□□□□□ -0.57
LIG3-201ENST00000262327 STRBPQ96SI9 672 aaKnown RBP11.52□□□□□ -0.57
LIG3-201ENST00000262327 SAMSN1Q9NSI8 373 aaKnown RBP11.52□□□□□ -0.57
LIG3-201ENST00000262327 NFE2L3Q9Y4A8 694 aa11.52□□□□□ -0.57
LIG3-201ENST00000262327 A0A0U1RQJ8 604 aa11.51□□□□□ -0.57
LIG3-201ENST00000262327 RPS6KA4O75676 772 aa11.51□□□□□ -0.57
LIG3-201ENST00000262327 CDKL5O76039 1030 aa11.51□□□□□ -0.57
LIG3-201ENST00000262327 CAMTA2O94983 1202 aa11.51□□□□□ -0.57
LIG3-201ENST00000262327 GNG11P61952 73 aa11.51□□□□□ -0.57
LIG3-201ENST00000262327 ATRIPQ8WXE1 791 aa11.51□□□□□ -0.57
LIG3-201ENST00000262327 PLA2G12BQ9BX93 195 aa11.51□□□□□ -0.57
LIG3-201ENST00000262327 MAN1B1Q9UKM7 699 aa11.51□□□□□ -0.57
LIG3-201ENST00000262327 CDHR2Q9BYE9 1310 aa11.51□□□□□ -0.57
LIG3-201ENST00000262327 PPP6R2O75170 966 aa11.51□□□□□ -0.57
LIG3-201ENST00000262327 CTSWP56202 376 aa11.51□□□□□ -0.57
LIG3-201ENST00000262327 SLC20A2Q08357 652 aa11.51□□□□□ -0.57
LIG3-201ENST00000262327 IFNL3Q8IZI9 196 aa11.51□□□□□ -0.57
LIG3-201ENST00000262327 STAMQ92783 540 aa11.51□□□□□ -0.57
LIG3-201ENST00000262327 RNF216Q9NWF9 866 aaPredicted RBP11.51□□□□□ -0.57
LIG3-201ENST00000262327 MYH14Q7Z406 1995 aaKnown RBP11.51□□□□□ -0.57
LIG3-201ENST00000262327 VWA3AA6NCI4 1184 aa11.51□□□□□ -0.57
LIG3-201ENST00000262327 PDE8BO95263 885 aa11.51□□□□□ -0.57
LIG3-201ENST00000262327 AFMP43652 599 aa11.51□□□□□ -0.57
LIG3-201ENST00000262327 SLC27A3Q5K4L6 730 aa11.51□□□□□ -0.57
LIG3-201ENST00000262327 CLEC4GQ6UXB4 293 aa11.51□□□□□ -0.57
LIG3-201ENST00000262327 SMYD4Q8IYR2 804 aaPredicted RBP11.51□□□□□ -0.57
LIG3-201ENST00000262327 KRI1Q8N9T8 703 aaKnown RBP11.51□□□□□ -0.57
LIG3-201ENST00000262327 ZNF652Q9Y2D9 606 aa11.51□□□□□ -0.57
LIG3-201ENST00000262327 PPP2R2CQ9Y2T4 447 aa11.51□□□□□ -0.57
LIG3-201ENST00000262327 H2AFXP16104 143 aaPredicted RBP11.5□□□□□ -0.57
LIG3-201ENST00000262327 TDO2P48775 406 aa11.5□□□□□ -0.57
LIG3-201ENST00000262327 GABPB1Q06547 395 aaPredicted RBP11.5□□□□□ -0.57
LIG3-201ENST00000262327 CREBRFQ8IUR6 639 aa11.5□□□□□ -0.57
LIG3-201ENST00000262327 NOSTRINQ8IVI9 506 aa11.5□□□□□ -0.57
LIG3-201ENST00000262327 CABP5Q9NP86 173 aa11.5□□□□□ -0.57
LIG3-201ENST00000262327 FHOD1Q9Y613 1164 aa11.5□□□□□ -0.57
LIG3-201ENST00000262327 CBFA2T2O43439 604 aa11.5□□□□□ -0.57
LIG3-201ENST00000262327 CUTAO60888 179 aa11.5□□□□□ -0.57
LIG3-201ENST00000262327 PRDM1O75626 825 aa11.5□□□□□ -0.57
LIG3-201ENST00000262327 POSTNQ15063 836 aa11.5□□□□□ -0.57
LIG3-201ENST00000262327 PARP10Q53GL7 1025 aa11.5□□□□□ -0.57
LIG3-201ENST00000262327 TEX35Q5T0J7 233 aa11.5□□□□□ -0.57
LIG3-201ENST00000262327 LCORLQ8N3X6 602 aa11.5□□□□□ -0.57
LIG3-201ENST00000262327 TIGD1Q96MW7 591 aa11.5□□□□□ -0.57
LIG3-201ENST00000262327 TRERF1Q96PN7 1200 aa11.5□□□□□ -0.57
LIG3-201ENST00000262327 MED15Q96RN5 788 aa11.5□□□□□ -0.57
LIG3-201ENST00000262327 BAG1Q99933 345 aaPredicted RBP11.5□□□□□ -0.57
LIG3-201ENST00000262327 KCND1Q9NSA2 647 aa11.5□□□□□ -0.57
LIG3-201ENST00000262327 MYO5AQ9Y4I1 1855 aaKnown RBP11.5□□□□□ -0.57
LIG3-201ENST00000262327 NUP98P52948 1817 aa11.49□□□□□ -0.57
LIG3-201ENST00000262327 TCRBV5S4A2TA0A5A2 114 aa11.49□□□□□ -0.57
LIG3-201ENST00000262327 MINDY4BA8MYZ0 360 aa11.49□□□□□ -0.57
LIG3-201ENST00000262327 RASGRF1Q13972 1273 aa11.49□□□□□ -0.57
LIG3-201ENST00000262327 TMEM139Q8IV31 216 aa11.49□□□□□ -0.57
LIG3-201ENST00000262327 ZCCHC17Q9NP64 241 aaKnown RBP11.49□□□□□ -0.57
LIG3-201ENST00000262327 PARP3Q9Y6F1 533 aa11.49□□□□□ -0.57
LIG3-201ENST00000262327 WTIPA6NIX2 430 aaPredicted RBP11.49□□□□□ -0.57
LIG3-201ENST00000262327 PNMA6AP0CW24 399 aaPredicted RBP11.49□□□□□ -0.57
LIG3-201ENST00000262327 BCAMP50895 628 aa11.49□□□□□ -0.57
LIG3-201ENST00000262327 UBE3CQ15386 1083 aa11.49□□□□□ -0.57
LIG3-201ENST00000262327 MFSD6Q6ZSS7 791 aa11.49□□□□□ -0.57
LIG3-201ENST00000262327 VGLL2Q8N8G2 317 aa11.49□□□□□ -0.57
LIG3-201ENST00000262327 DHX58Q96C10 678 aa11.49□□□□□ -0.57
LIG3-201ENST00000262327 CCDC34Q96HJ3 373 aa11.49□□□□□ -0.57
LIG3-201ENST00000262327 AK7Q96M32 723 aa11.49□□□□□ -0.57
LIG3-201ENST00000262327 BCORQ6W2J9 1755 aa11.49□□□□□ -0.57
LIG3-201ENST00000262327 TEX33O43247 280 aa11.49□□□□□ -0.57
LIG3-201ENST00000262327 TFRCP02786 760 aaKnown RBP11.49□□□□□ -0.57
LIG3-201ENST00000262327 SAFBQ15424 915 aaKnown RBP eCLIP11.49□□□□□ -0.57
LIG3-201ENST00000262327 NOM1Q5C9Z4 860 aaKnown RBP11.49□□□□□ -0.57
LIG3-201ENST00000262327 SPATA5Q8NB90 893 aa11.49□□□□□ -0.57
LIG3-201ENST00000262327 SDR42E1Q8WUS8 393 aa11.49□□□□□ -0.57
LIG3-201ENST00000262327 TMEM87BQ96K49 555 aa11.49□□□□□ -0.57
LIG3-201ENST00000262327 LZTFL1Q9NQ48 299 aa11.49□□□□□ -0.57
LIG3-201ENST00000262327 RGS17Q9UGC6 210 aaPredicted RBP11.49□□□□□ -0.57
LIG3-201ENST00000262327 SLC4A4Q9Y6R1 1079 aa11.49□□□□□ -0.57
LIG3-201ENST00000262327 TAF1LQ8IZX4 1826 aa11.48□□□□□ -0.57
LIG3-201ENST00000262327 GSG1L2A8MUP6 293 aa11.48□□□□□ -0.57
LIG3-201ENST00000262327 TRIM37O94972 964 aa11.48□□□□□ -0.57
LIG3-201ENST00000262327 PLA2G4AP47712 749 aa11.48□□□□□ -0.57
LIG3-201ENST00000262327 MDM2Q00987 491 aaPredicted RBP11.48□□□□□ -0.57
LIG3-201ENST00000262327 BMS1Q14692 1282 aaKnown RBP11.48□□□□□ -0.57
LIG3-201ENST00000262327 TTF1Q15361 905 aaPredicted RBP11.48□□□□□ -0.57
LIG3-201ENST00000262327 RTN1Q16799 776 aa11.48□□□□□ -0.57
LIG3-201ENST00000262327 SMARCE1Q969G3 411 aa11.48□□□□□ -0.57
LIG3-201ENST00000262327 EPSTI1Q96J88 318 aa11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms