RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 USP17L12C9JPN9 530 aa15.46■□□□□ 0.07
LDLR-201ENST00000252444 USP17L21D6R901 530 aa15.46■□□□□ 0.07
LDLR-201ENST00000252444 MCM3P25205 808 aa15.46■□□□□ 0.07
LDLR-201ENST00000252444 RPS12P25398 132 aaKnown RBP15.46■□□□□ 0.07
LDLR-201ENST00000252444 SYCP3Q8IZU3 236 aa15.46■□□□□ 0.07
LDLR-201ENST00000252444 SRP68Q9UHB9 627 aaKnown RBP15.46■□□□□ 0.07
LDLR-201ENST00000252444 FAM160A1Q05DH4 1040 aa15.46■□□□□ 0.07
LDLR-201ENST00000252444 HLFQ16534 295 aa15.46■□□□□ 0.07
LDLR-201ENST00000252444 NOM1Q5C9Z4 860 aaKnown RBP15.46■□□□□ 0.07
LDLR-201ENST00000252444 ANO1Q5XXA6 986 aa15.46■□□□□ 0.07
LDLR-201ENST00000252444 DCAF4Q8WV16 495 aa15.46■□□□□ 0.07
LDLR-201ENST00000252444 NFAT5O94916 1531 aa15.46■□□□□ 0.07
LDLR-201ENST00000252444 A0A0D9SFI3 127 aa15.46■□□□□ 0.07
LDLR-201ENST00000252444 NBPF26B4DH59 902 aa15.46■□□□□ 0.07
LDLR-201ENST00000252444 NBPF10Q6P3W6 841 aaKnown RBP15.46■□□□□ 0.07
LDLR-201ENST00000252444 CCDC129Q6ZRS4 1044 aa15.46■□□□□ 0.07
LDLR-201ENST00000252444 SV2BQ7L1I2 683 aa15.46■□□□□ 0.07
LDLR-201ENST00000252444 NBPF15Q8N660 670 aa15.46■□□□□ 0.07
LDLR-201ENST00000252444 TTC12Q9H892 705 aaPredicted RBP15.46■□□□□ 0.07
LDLR-201ENST00000252444 GRIN3BO60391 1043 aa15.46■□□□□ 0.06
LDLR-201ENST00000252444 IREB2P48200 963 aaKnown RBP15.46■□□□□ 0.06
LDLR-201ENST00000252444 CACNA2D4Q7Z3S7 1137 aa15.46■□□□□ 0.06
LDLR-201ENST00000252444 CUEDC2Q9H467 287 aa15.46■□□□□ 0.06
LDLR-201ENST00000252444 ICA1Q05084 483 aa15.45■□□□□ 0.06
LDLR-201ENST00000252444 DGKHQ86XP1 1220 aa15.45■□□□□ 0.06
LDLR-201ENST00000252444 RNF214Q8ND24 703 aa15.45■□□□□ 0.06
LDLR-201ENST00000252444 SPON1Q9HCB6 807 aa15.45■□□□□ 0.06
LDLR-201ENST00000252444 MTIF2P46199 727 aaKnown RBP15.45■□□□□ 0.06
LDLR-201ENST00000252444 KIF22Q14807 665 aa15.45■□□□□ 0.06
LDLR-201ENST00000252444 CNNM4Q6P4Q7 775 aa15.45■□□□□ 0.06
LDLR-201ENST00000252444 PUS3Q9BZE2 481 aaKnown RBP15.45■□□□□ 0.06
LDLR-201ENST00000252444 PHLPP1O60346 1717 aa15.45■□□□□ 0.06
LDLR-201ENST00000252444 FAM13AO94988 1023 aa15.45■□□□□ 0.06
LDLR-201ENST00000252444 TTC38Q5R3I4 469 aa15.45■□□□□ 0.06
LDLR-201ENST00000252444 HS2ST1Q7LGA3 356 aa15.45■□□□□ 0.06
LDLR-201ENST00000252444 TEX2Q8IWB9 1127 aa15.45■□□□□ 0.06
LDLR-201ENST00000252444 KDM6AO15550 1401 aaPredicted RBP15.45■□□□□ 0.06
LDLR-201ENST00000252444 SASH1O94885 1247 aa15.45■□□□□ 0.06
LDLR-201ENST00000252444 REXO1Q8N1G1 1221 aaKnown RBP15.45■□□□□ 0.06
LDLR-201ENST00000252444 PI4K2BQ8TCG2 481 aa15.45■□□□□ 0.06
LDLR-201ENST00000252444 FAM200AQ8TCP9 573 aa15.45■□□□□ 0.06
LDLR-201ENST00000252444 STAG1Q8WVM7 1258 aa15.45■□□□□ 0.06
LDLR-201ENST00000252444 TAF4BQ92750 862 aa15.45■□□□□ 0.06
LDLR-201ENST00000252444 RUFY1Q96T51 708 aa15.45■□□□□ 0.06
LDLR-201ENST00000252444 SYT1P21579 422 aa15.44■□□□□ 0.06
LDLR-201ENST00000252444 HDLBPQ00341 1268 aaKnown RBP15.44■□□□□ 0.06
LDLR-201ENST00000252444 TRIM14Q14142 442 aa15.44■□□□□ 0.06
LDLR-201ENST00000252444 NFIXQ14938 502 aa15.44■□□□□ 0.06
LDLR-201ENST00000252444 ATP6V0A2Q9Y487 856 aa15.44■□□□□ 0.06
LDLR-201ENST00000252444 SYCE3A1L190 88 aa15.44■□□□□ 0.06
LDLR-201ENST00000252444 FANCBQ8NB91 859 aa15.44■□□□□ 0.06
LDLR-201ENST00000252444 PHLPP2Q6ZVD8 1323 aa15.44■□□□□ 0.06
LDLR-201ENST00000252444 SEC31BQ9NQW1 1179 aa15.44■□□□□ 0.06
LDLR-201ENST00000252444 MROH7-TTC4A0A0A0MT08 1334 aa15.44■□□□□ 0.06
LDLR-201ENST00000252444 STK36Q9NRP7 1315 aa15.44■□□□□ 0.06
LDLR-201ENST00000252444 STX10O60499 249 aa15.44■□□□□ 0.06
LDLR-201ENST00000252444 FGAP02671 866 aa15.44■□□□□ 0.06
LDLR-201ENST00000252444 GTF3C2Q8WUA4 911 aaPredicted RBP15.44■□□□□ 0.06
LDLR-201ENST00000252444 TNKSO95271 1327 aa15.43■□□□□ 0.06
LDLR-201ENST00000252444 PRPHP41219 470 aa15.43■□□□□ 0.06
LDLR-201ENST00000252444 TBC1D5Q92609 795 aa15.43■□□□□ 0.06
LDLR-201ENST00000252444 SERPINB13Q9UIV8 391 aa15.43■□□□□ 0.06
LDLR-201ENST00000252444 CTDSPL2Q05D32 466 aa15.43■□□□□ 0.06
LDLR-201ENST00000252444 TMEM179Q6ZVK1 233 aa15.43■□□□□ 0.06
LDLR-201ENST00000252444 CDHR1Q96JP9 859 aa15.43■□□□□ 0.06
LDLR-201ENST00000252444 LRRC2Q9BYS8 371 aa15.43■□□□□ 0.06
LDLR-201ENST00000252444 PNMA3Q9UL41 463 aa15.43■□□□□ 0.06
LDLR-201ENST00000252444 IQCA1LA6NCM1 817 aa15.43■□□□□ 0.06
LDLR-201ENST00000252444 NTSR2O95665 410 aa15.43■□□□□ 0.06
LDLR-201ENST00000252444 SMTNP53814 917 aa15.43■□□□□ 0.06
LDLR-201ENST00000252444 PNMA1Q8ND90 353 aa15.43■□□□□ 0.06
LDLR-201ENST00000252444 ADORA1P30542 326 aa15.42■□□□□ 0.06
LDLR-201ENST00000252444 TUBB4BP68371 445 aa15.42■□□□□ 0.06
LDLR-201ENST00000252444 LINC00116Q8NCU8 138 aa15.42■□□□□ 0.06
LDLR-201ENST00000252444 LMO7Q8WWI1 1683 aa15.42■□□□□ 0.06
LDLR-201ENST00000252444 PLSCR1O15162 318 aa15.42■□□□□ 0.06
LDLR-201ENST00000252444 MSANTD4Q8NCY6 345 aa15.42■□□□□ 0.06
LDLR-201ENST00000252444 MAP7D2Q96T17 732 aa15.42■□□□□ 0.06
LDLR-201ENST00000252444 DIS3L2Q8IYB7 885 aaKnown RBP15.42■□□□□ 0.06
LDLR-201ENST00000252444 TRIM47Q96LD4 638 aa15.42■□□□□ 0.06
LDLR-201ENST00000252444 FOXP1Q9H334 677 aaPredicted RBP15.42■□□□□ 0.06
LDLR-201ENST00000252444 GCOM1H8Y6P7 765 aaPredicted RBP15.42■□□□□ 0.06
LDLR-201ENST00000252444 POLR2MP0CAP2 368 aa15.42■□□□□ 0.06
LDLR-201ENST00000252444 TGFB2P61812 414 aa15.42■□□□□ 0.06
LDLR-201ENST00000252444 GPCPD1Q9NPB8 672 aa15.42■□□□□ 0.06
LDLR-201ENST00000252444 PIK3C2AO00443 1686 aa15.42■□□□□ 0.06
LDLR-201ENST00000252444 MYL1P05976 194 aa15.41■□□□□ 0.06
LDLR-201ENST00000252444 USP17L8P0C7I0 530 aa15.41■□□□□ 0.06
LDLR-201ENST00000252444 SCG2P13521 617 aa15.41■□□□□ 0.06
LDLR-201ENST00000252444 IDEP14735 1019 aa15.41■□□□□ 0.06
LDLR-201ENST00000252444 ASIC1P78348 528 aa15.41■□□□□ 0.06
LDLR-201ENST00000252444 CKAP2LQ8IYA6 745 aa15.41■□□□□ 0.06
LDLR-201ENST00000252444 CD209Q9NNX6 404 aa15.41■□□□□ 0.06
LDLR-201ENST00000252444 HERC5Q9UII4 1024 aaKnown RBP15.41■□□□□ 0.06
LDLR-201ENST00000252444 KIAA1328Q86T90 577 aa15.41■□□□□ 0.06
LDLR-201ENST00000252444 V9GY48 417 aaPredicted RBP15.41■□□□□ 0.06
LDLR-201ENST00000252444 SLC26A4O43511 780 aa15.41■□□□□ 0.06
LDLR-201ENST00000252444 ERLIN1O75477 346 aa15.41■□□□□ 0.06
LDLR-201ENST00000252444 FMNL1O95466 1100 aaPredicted RBP15.41■□□□□ 0.06
LDLR-201ENST00000252444 ZNF165P49910 485 aa15.41■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms