RNA–Protein interactions for RNA: ENST00000228251.8

YBX3-201, Transcript of Y-box binding protein 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene YBX3, Length 1,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-201ENST00000228251 PODXL2Q9NZ53 605 aa22.13■■□□□ 1.13
YBX3-201ENST00000228251 KCNJ14Q9UNX9 436 aa22.13■■□□□ 1.13
YBX3-201ENST00000228251 PRPF3O43395 683 aaKnown RBP22.12■■□□□ 1.13
YBX3-201ENST00000228251 ZNF202O95125 648 aa22.12■■□□□ 1.13
YBX3-201ENST00000228251 IL1R1P14778 569 aa22.12■■□□□ 1.13
YBX3-201ENST00000228251 MARCKSP29966 332 aaPredicted RBP22.12■■□□□ 1.13
YBX3-201ENST00000228251 NT5C2P49902 561 aa22.12■■□□□ 1.13
YBX3-201ENST00000228251 RESP18Q5W5W9 173 aa22.12■■□□□ 1.13
YBX3-201ENST00000228251 SARM1Q6SZW1 724 aa22.12■■□□□ 1.13
YBX3-201ENST00000228251 RBM28Q9NW13 759 aaKnown RBP22.12■■□□□ 1.13
YBX3-201ENST00000228251 ANO10Q9NW15 660 aa22.12■■□□□ 1.13
YBX3-201ENST00000228251 KIAA1468Q9P260 1216 aa22.12■■□□□ 1.13
YBX3-201ENST00000228251 CALM1P0DP23 149 aa22.12■■□□□ 1.13
YBX3-201ENST00000228251 CALM2P0DP24 149 aa22.12■■□□□ 1.13
YBX3-201ENST00000228251 CALM3P0DP25 149 aa22.12■■□□□ 1.13
YBX3-201ENST00000228251 ATP2B4P23634 1241 aa22.12■■□□□ 1.13
YBX3-201ENST00000228251 C12orf60Q5U649 245 aa22.12■■□□□ 1.13
YBX3-201ENST00000228251 RCSD1Q6JBY9 416 aa22.12■■□□□ 1.13
YBX3-201ENST00000228251 CATIPQ7Z7H3 387 aa22.12■■□□□ 1.13
YBX3-201ENST00000228251 JMYQ8N9B5 988 aa22.12■■□□□ 1.13
YBX3-201ENST00000228251 GPR101Q96P66 508 aaPredicted RBP22.12■■□□□ 1.13
YBX3-201ENST00000228251 MORC2Q9Y6X9 1032 aaPredicted RBP22.12■■□□□ 1.13
YBX3-201ENST00000228251 GNL2Q13823 731 aaKnown RBP22.11■■□□□ 1.13
YBX3-201ENST00000228251 TMTC3Q6ZXV5 915 aa22.11■■□□□ 1.13
YBX3-201ENST00000228251 RBM17Q96I25 401 aaKnown RBP22.11■■□□□ 1.13
YBX3-201ENST00000228251 CRAMP1Q96RY5 1269 aa22.11■■□□□ 1.13
YBX3-201ENST00000228251 CD209Q9NNX6 404 aa22.11■■□□□ 1.13
YBX3-201ENST00000228251 CUTAO60888 179 aa22.1■■□□□ 1.13
YBX3-201ENST00000228251 BBOX1O75936 387 aa22.1■■□□□ 1.13
YBX3-201ENST00000228251 TRIM37O94972 964 aa22.1■■□□□ 1.13
YBX3-201ENST00000228251 PLEKHA8P1O95397 391 aa22.1■■□□□ 1.13
YBX3-201ENST00000228251 ZNF75DP51815 510 aa22.1■■□□□ 1.13
YBX3-201ENST00000228251 SAFBQ15424 915 aaKnown RBP eCLIP22.1■■□□□ 1.13
YBX3-201ENST00000228251 DHX40Q8IX18 779 aaKnown RBP22.1■■□□□ 1.13
YBX3-201ENST00000228251 CCDC82Q8N4S0 544 aa22.1■■□□□ 1.13
YBX3-201ENST00000228251 CNTNAP5Q8WYK1 1306 aa22.1■■□□□ 1.13
YBX3-201ENST00000228251 SLC3A2P08195 630 aaKnown RBP22.1■■□□□ 1.13
YBX3-201ENST00000228251 USP17L8P0C7I0 530 aa22.1■■□□□ 1.13
YBX3-201ENST00000228251 GSTO1P78417 241 aa22.1■■□□□ 1.13
YBX3-201ENST00000228251 ARHGAP30Q7Z6I6 1101 aaPredicted RBP22.1■■□□□ 1.13
YBX3-201ENST00000228251 OXER1Q8TDS5 423 aa22.1■■□□□ 1.13
YBX3-201ENST00000228251 SH3RF3Q8TEJ3 882 aaPredicted RBP22.1■■□□□ 1.13
YBX3-201ENST00000228251 SDF4Q9BRK5 362 aa22.1■■□□□ 1.13
YBX3-201ENST00000228251 RTFDC1Q9BY42 306 aaPredicted RBP22.1■■□□□ 1.13
YBX3-201ENST00000228251 KCNF1Q9H3M0 494 aa22.1■■□□□ 1.13
YBX3-201ENST00000228251 A0A087WWV3 80 aa22.09■■□□□ 1.13
YBX3-201ENST00000228251 NMT2O60551 498 aa22.09■■□□□ 1.13
YBX3-201ENST00000228251 PLCB2Q00722 1185 aa22.09■■□□□ 1.13
YBX3-201ENST00000228251 NR5A1Q13285 461 aa22.09■■□□□ 1.13
YBX3-201ENST00000228251 RILPL1Q5EBL4 403 aa22.09■■□□□ 1.13
YBX3-201ENST00000228251 MPNDQ8N594 471 aa22.09■■□□□ 1.13
YBX3-201ENST00000228251 ANKS1AQ92625 1134 aa22.09■■□□□ 1.13
YBX3-201ENST00000228251 ERCC4Q92889 916 aaPredicted RBP22.09■■□□□ 1.13
YBX3-201ENST00000228251 PHF20Q9BVI0 1012 aa22.09■■□□□ 1.13
YBX3-201ENST00000228251 TTC12Q9H892 705 aaPredicted RBP22.09■■□□□ 1.13
YBX3-201ENST00000228251 QSER1Q2KHR3 1735 aa22.09■■□□□ 1.13
YBX3-201ENST00000228251 UFL1O94874 794 aa22.08■■□□□ 1.13
YBX3-201ENST00000228251 PDE4BQ07343 736 aa22.08■■□□□ 1.13
YBX3-201ENST00000228251 DIXDC1Q155Q3 683 aa22.08■■□□□ 1.13
YBX3-201ENST00000228251 NPY5RQ15761 445 aa22.08■■□□□ 1.13
YBX3-201ENST00000228251 TXNRD1Q16881 649 aa22.08■■□□□ 1.13
YBX3-201ENST00000228251 ZNF830Q96NB3 372 aaPredicted RBP22.08■■□□□ 1.13
YBX3-201ENST00000228251 BPIFA3Q9BQP9 254 aa22.08■■□□□ 1.13
YBX3-201ENST00000228251 MCM9Q9NXL9 1143 aa22.08■■□□□ 1.13
YBX3-201ENST00000228251 GGA1Q9UJY5 639 aa22.08■■□□□ 1.13
YBX3-201ENST00000228251 TPM3P06753 285 aa22.07■■□□□ 1.12
YBX3-201ENST00000228251 CDC25BP30305 580 aa22.07■■□□□ 1.12
YBX3-201ENST00000228251 FAM47AQ5JRC9 791 aa22.07■■□□□ 1.12
YBX3-201ENST00000228251 CLIC6Q96NY7 704 aa22.07■■□□□ 1.12
YBX3-201ENST00000228251 TUBE1Q9UJT0 475 aa22.07■■□□□ 1.12
YBX3-201ENST00000228251 FBXO2Q9UK22 296 aaPredicted RBP22.07■■□□□ 1.12
YBX3-201ENST00000228251 MYH1P12882 1939 aa22.07■■□□□ 1.12
YBX3-201ENST00000228251 COL11A2P13942 1736 aaPredicted RBP22.07■■□□□ 1.12
YBX3-201ENST00000228251 PTPREP23469 700 aa22.07■■□□□ 1.12
YBX3-201ENST00000228251 SYKP43405 635 aa22.07■■□□□ 1.12
YBX3-201ENST00000228251 RBM6P78332 1123 aaKnown RBP22.07■■□□□ 1.12
YBX3-201ENST00000228251 PDZRN4Q6ZMN7 1036 aaPredicted RBP22.07■■□□□ 1.12
YBX3-201ENST00000228251 TBC1D16Q8TBP0 767 aa22.07■■□□□ 1.12
YBX3-201ENST00000228251 PIBF1Q8WXW3 757 aa22.07■■□□□ 1.12
YBX3-201ENST00000228251 TNFRSF25Q93038 417 aa22.07■■□□□ 1.12
YBX3-201ENST00000228251 POLLQ9UGP5 575 aa22.07■■□□□ 1.12
YBX3-201ENST00000228251 KIAA2012Q0VF49 1180 aa22.06■■□□□ 1.12
YBX3-201ENST00000228251 CEP57L1Q8IYX8 460 aa22.06■■□□□ 1.12
YBX3-201ENST00000228251 SRBD1Q8N5C6 995 aaKnown RBP22.06■■□□□ 1.12
YBX3-201ENST00000228251 KRI1Q8N9T8 703 aaKnown RBP22.06■■□□□ 1.12
YBX3-201ENST00000228251 IL17RBQ9NRM6 502 aa22.06■■□□□ 1.12
YBX3-201ENST00000228251 LDHCP07864 332 aa22.05■■□□□ 1.12
YBX3-201ENST00000228251 DPCR1Q3MIW9 517 aa22.05■■□□□ 1.12
YBX3-201ENST00000228251 CERS3Q8IU89 383 aa22.05■■□□□ 1.12
YBX3-201ENST00000228251 ELOA2Q8IYF1 753 aaPredicted RBP22.05■■□□□ 1.12
YBX3-201ENST00000228251 FAM163AQ96GL9 167 aaPredicted RBP22.05■■□□□ 1.12
YBX3-201ENST00000228251 V9GY48 417 aaPredicted RBP22.05■■□□□ 1.12
YBX3-201ENST00000228251 GPR75-ASB3A0A0A6YYF3 556 aa22.04■■□□□ 1.12
YBX3-201ENST00000228251 BAG3O95817 575 aa22.04■■□□□ 1.12
YBX3-201ENST00000228251 NLRP12P59046 1061 aa22.04■■□□□ 1.12
YBX3-201ENST00000228251 TMC4Q7Z404 712 aa22.04■■□□□ 1.12
YBX3-201ENST00000228251 VPS54Q9P1Q0 977 aa22.04■■□□□ 1.12
YBX3-201ENST00000228251 PCDHB6Q9Y5E3 794 aa22.04■■□□□ 1.12
YBX3-201ENST00000228251 FAM205AQ6ZU69 1335 aa22.04■■□□□ 1.12
YBX3-201ENST00000228251 BAZ2BQ9UIF8 2168 aaKnown RBP22.04■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms