RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 CYP2B6P20813 491 aa20.44■□□□□ 0.86
CLN3-264ENST00000637985 LBHD1Q9BQE6 289 aaPredicted RBP20.44■□□□□ 0.86
CLN3-264ENST00000637985 SRCIN1Q9C0H9 1055 aa20.44■□□□□ 0.86
CLN3-264ENST00000637985 UTYO14607 1347 aa20.44■□□□□ 0.86
CLN3-264ENST00000637985 LOC285556D6RIA3 1793 aa20.44■□□□□ 0.86
CLN3-264ENST00000637985 LDHBP07195 334 aaKnown RBP20.43■□□□□ 0.86
CLN3-264ENST00000637985 ZSCAN29Q8IWY8 852 aaPredicted RBP20.43■□□□□ 0.86
CLN3-264ENST00000637985 ANKRD44Q8N8A2 993 aa20.43■□□□□ 0.86
CLN3-264ENST00000637985 ASCC2Q9H1I8 757 aaPredicted RBP20.43■□□□□ 0.86
CLN3-264ENST00000637985 MORF4L1Q9UBU8 362 aa20.43■□□□□ 0.86
CLN3-264ENST00000637985 EXOSC9Q06265 439 aaKnown RBP20.42■□□□□ 0.86
CLN3-264ENST00000637985 CACNB2Q08289 660 aaPredicted RBP20.42■□□□□ 0.86
CLN3-264ENST00000637985 SPP2Q13103 211 aa20.42■□□□□ 0.86
CLN3-264ENST00000637985 PABPC4Q13310 644 aaKnown RBP eCLIP20.42■□□□□ 0.86
CLN3-264ENST00000637985 KLHDC4Q8TBB5 520 aa20.42■□□□□ 0.86
CLN3-264ENST00000637985 SLC4A10Q6U841 1118 aa20.41■□□□□ 0.86
CLN3-264ENST00000637985 NUDT12Q9BQG2 462 aa20.41■□□□□ 0.86
CLN3-264ENST00000637985 TBC1D12O60347 775 aa20.4■□□□□ 0.86
CLN3-264ENST00000637985 SLC5A1P13866 664 aa20.4■□□□□ 0.86
CLN3-264ENST00000637985 CCND3P30281 292 aaPredicted RBP20.4■□□□□ 0.86
CLN3-264ENST00000637985 TRMT44Q8IYL2 757 aaKnown RBP20.4■□□□□ 0.86
CLN3-264ENST00000637985 ZNF280CQ8ND82 737 aa20.4■□□□□ 0.86
CLN3-264ENST00000637985 SOCS4Q8WXH5 440 aa20.4■□□□□ 0.86
CLN3-264ENST00000637985 LPIN2Q92539 896 aa20.4■□□□□ 0.86
CLN3-264ENST00000637985 DDX4Q9NQI0 724 aaKnown RBP20.4■□□□□ 0.86
CLN3-264ENST00000637985 SALL1Q9NSC2 1324 aa20.4■□□□□ 0.86
CLN3-264ENST00000637985 MYH2Q9UKX2 1941 aa20.39■□□□□ 0.86
CLN3-264ENST00000637985 MAST2Q6P0Q8 1798 aa20.39■□□□□ 0.86
CLN3-264ENST00000637985 GAKO14976 1311 aa20.39■□□□□ 0.85
CLN3-264ENST00000637985 ZKSCAN1P17029 563 aaPredicted RBP20.39■□□□□ 0.85
CLN3-264ENST00000637985 HMGCS2P54868 508 aa20.39■□□□□ 0.85
CLN3-264ENST00000637985 MYLIPQ8WY64 445 aa20.39■□□□□ 0.85
CLN3-264ENST00000637985 SH3D19Q5HYK7 790 aa20.38■□□□□ 0.85
CLN3-264ENST00000637985 USP6NLQ92738 828 aa20.38■□□□□ 0.85
CLN3-264ENST00000637985 TBC1D2Q9BYX2 928 aa20.38■□□□□ 0.85
CLN3-264ENST00000637985 TTYH1Q9H313 450 aaPredicted RBP20.38■□□□□ 0.85
CLN3-264ENST00000637985 SHHQ15465 462 aa20.37■□□□□ 0.85
CLN3-264ENST00000637985 SENP6Q9GZR1 1112 aaPredicted RBP20.37■□□□□ 0.85
CLN3-264ENST00000637985 OSBPL5Q9H0X9 879 aaPredicted RBP20.37■□□□□ 0.85
CLN3-264ENST00000637985 LTBP2Q14767 1821 aa20.37■□□□□ 0.85
CLN3-264ENST00000637985 GPRC5AQ8NFJ5 357 aa20.36■□□□□ 0.85
CLN3-264ENST00000637985 TXNRD2Q9NNW7 524 aa20.36■□□□□ 0.85
CLN3-264ENST00000637985 ZNF521Q96K83 1311 aa20.35■□□□□ 0.85
CLN3-264ENST00000637985 FRMPD3Q5JV73 1810 aa20.35■□□□□ 0.85
CLN3-264ENST00000637985 TNFRSF10AO00220 468 aa20.35■□□□□ 0.85
CLN3-264ENST00000637985 PEX10O60683 326 aa20.35■□□□□ 0.85
CLN3-264ENST00000637985 FOSL2P15408 326 aa20.35■□□□□ 0.85
CLN3-264ENST00000637985 SMAD3P84022 425 aaKnown RBP20.35■□□□□ 0.85
CLN3-264ENST00000637985 PICALMQ13492 652 aa20.35■□□□□ 0.85
CLN3-264ENST00000637985 CCL14Q16627 93 aa20.35■□□□□ 0.85
CLN3-264ENST00000637985 C9orf50Q5SZB4 431 aa20.35■□□□□ 0.85
CLN3-264ENST00000637985 FAM163AQ96GL9 167 aaPredicted RBP20.35■□□□□ 0.85
CLN3-264ENST00000637985 GNL3LQ9NVN8 582 aaKnown RBP20.35■□□□□ 0.85
CLN3-264ENST00000637985 RAPGEFL1Q9UHV5 662 aa20.35■□□□□ 0.85
CLN3-264ENST00000637985 FAM196BA6NMK8 535 aa20.34■□□□□ 0.85
CLN3-264ENST00000637985 EYA2O00167 538 aa20.34■□□□□ 0.85
CLN3-264ENST00000637985 MAPK4P31152 587 aa20.34■□□□□ 0.85
CLN3-264ENST00000637985 PDE3AQ14432 1141 aa20.34■□□□□ 0.85
CLN3-264ENST00000637985 TJAP1Q5JTD0 557 aa20.34■□□□□ 0.85
CLN3-264ENST00000637985 MORN1Q5T089 497 aa20.34■□□□□ 0.85
CLN3-264ENST00000637985 P2RX7Q99572 595 aaKnown RBP20.34■□□□□ 0.85
CLN3-264ENST00000637985 XPO5Q9HAV4 1204 aaKnown RBP eCLIP20.34■□□□□ 0.85
CLN3-264ENST00000637985 PRKAG2Q9UGJ0 569 aa20.34■□□□□ 0.85
CLN3-264ENST00000637985 DENND2AQ9ULE3 1009 aa20.34■□□□□ 0.85
CLN3-264ENST00000637985 SEMA3EO15041 775 aa20.33■□□□□ 0.85
CLN3-264ENST00000637985 ZBTB22O15209 634 aa20.33■□□□□ 0.85
CLN3-264ENST00000637985 NPM3O75607 178 aaKnown RBP20.33■□□□□ 0.85
CLN3-264ENST00000637985 HOXA7P31268 230 aaPredicted RBP20.33■□□□□ 0.85
CLN3-264ENST00000637985 RGS2P41220 211 aa20.33■□□□□ 0.85
CLN3-264ENST00000637985 IRX3P78415 501 aaPredicted RBP20.33■□□□□ 0.85
CLN3-264ENST00000637985 ATAD5Q96QE3 1844 aa20.32■□□□□ 0.84
CLN3-264ENST00000637985 USP17L5A8MUK1 530 aa20.32■□□□□ 0.84
CLN3-264ENST00000637985 CAP2P40123 477 aa20.32■□□□□ 0.84
CLN3-264ENST00000637985 RFX5P48382 616 aaPredicted RBP20.32■□□□□ 0.84
CLN3-264ENST00000637985 ATN1P54259 1190 aaPredicted RBP20.32■□□□□ 0.84
CLN3-264ENST00000637985 RRP1BQ14684 758 aaKnown RBP20.32■□□□□ 0.84
CLN3-264ENST00000637985 ATG9AQ7Z3C6 839 aa20.32■□□□□ 0.84
CLN3-264ENST00000637985 ZGPATQ8N5A5 531 aaKnown RBP20.32■□□□□ 0.84
CLN3-264ENST00000637985 APBA2Q99767 749 aa20.32■□□□□ 0.84
CLN3-264ENST00000637985 RBPJLQ9UBG7 517 aa20.32■□□□□ 0.84
CLN3-264ENST00000637985 PLA2G5P39877 138 aa20.31■□□□□ 0.84
CLN3-264ENST00000637985 BTDP43251 543 aa20.31■□□□□ 0.84
CLN3-264ENST00000637985 RTP1P59025 263 aa20.31■□□□□ 0.84
CLN3-264ENST00000637985 HERVK_113P62684 666 aa20.31■□□□□ 0.84
CLN3-264ENST00000637985 Q3C1V9 767 aa20.31■□□□□ 0.84
CLN3-264ENST00000637985 GPR142Q7Z601 462 aa20.31■□□□□ 0.84
CLN3-264ENST00000637985 SLF2Q8IX21 1173 aa20.31■□□□□ 0.84
CLN3-264ENST00000637985 PORCNQ9H237 461 aa20.31■□□□□ 0.84
CLN3-264ENST00000637985 PHKA1P46020 1223 aa20.3■□□□□ 0.84
CLN3-264ENST00000637985 RHBDL3P58872 404 aa20.3■□□□□ 0.84
CLN3-264ENST00000637985 DZIP1Q86YF9 867 aaKnown RBP20.3■□□□□ 0.84
CLN3-264ENST00000637985 LPAR1Q92633 364 aa20.3■□□□□ 0.84
CLN3-264ENST00000637985 WDR18Q9BV38 432 aa20.3■□□□□ 0.84
CLN3-264ENST00000637985 AS3MTQ9HBK9 375 aa20.3■□□□□ 0.84
CLN3-264ENST00000637985 TMEM265A0A087WTH1 108 aa20.29■□□□□ 0.84
CLN3-264ENST00000637985 GPR75-ASB3A0A0A6YYF3 556 aa20.29■□□□□ 0.84
CLN3-264ENST00000637985 DNM1LO00429 736 aa20.29■□□□□ 0.84
CLN3-264ENST00000637985 BACE1P56817 501 aa20.29■□□□□ 0.84
CLN3-264ENST00000637985 ERVK-9P63128 1117 aa20.29■□□□□ 0.84
CLN3-264ENST00000637985 ERVK-24P63145 666 aa20.29■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms