RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 SMARCA5O60264 1052 aaPredicted RBP23.37■■□□□ 1.33
CLN3-260ENST00000637578 HAUS7Q99871 368 aa23.37■■□□□ 1.33
CLN3-260ENST00000637578 RIOK1Q9BRS2 568 aaKnown RBP23.37■■□□□ 1.33
CLN3-260ENST00000637578 PDE6AP16499 860 aa23.36■■□□□ 1.33
CLN3-260ENST00000637578 SLC9C2Q5TAH2 1124 aa23.36■■□□□ 1.33
CLN3-260ENST00000637578 FOXP4Q8IVH2 680 aaPredicted RBP23.36■■□□□ 1.33
CLN3-260ENST00000637578 DNAJC2Q99543 621 aaKnown RBP23.36■■□□□ 1.33
CLN3-260ENST00000637578 BOLA2Q9H3K6 86 aa23.36■■□□□ 1.33
CLN3-260ENST00000637578 FOCADQ5VW36 1801 aa23.36■■□□□ 1.33
CLN3-260ENST00000637578 CDK5RAP2Q96SN8 1893 aa23.36■■□□□ 1.33
CLN3-260ENST00000637578 TCRBV5S4A2TA0A5A2 114 aa23.35■■□□□ 1.33
CLN3-260ENST00000637578 CCDC85CA6NKD9 419 aa23.35■■□□□ 1.33
CLN3-260ENST00000637578 TLR2O60603 784 aa23.35■■□□□ 1.33
CLN3-260ENST00000637578 SP3Q02447 781 aa23.35■■□□□ 1.33
CLN3-260ENST00000637578 RRP1BQ14684 758 aaKnown RBP23.35■■□□□ 1.33
CLN3-260ENST00000637578 EDC3Q96F86 508 aaKnown RBP23.35■■□□□ 1.33
CLN3-260ENST00000637578 PALD1Q9ULE6 856 aa23.35■■□□□ 1.33
CLN3-260ENST00000637578 A0A0G2JLL6 359 aaPredicted RBP23.35■■□□□ 1.33
CLN3-260ENST00000637578 CAP2P40123 477 aa23.35■■□□□ 1.33
CLN3-260ENST00000637578 PRRT2Q7Z6L0 340 aaPredicted RBP23.35■■□□□ 1.33
CLN3-260ENST00000637578 EXOC6Q8TAG9 804 aa23.35■■□□□ 1.33
CLN3-260ENST00000637578 ERO1AQ96HE7 468 aa23.35■■□□□ 1.33
CLN3-260ENST00000637578 BCL11AQ9H165 835 aa23.35■■□□□ 1.33
CLN3-260ENST00000637578 DNAJC18Q9H819 358 aa23.35■■□□□ 1.33
CLN3-260ENST00000637578 PAG1Q9NWQ8 432 aa23.35■■□□□ 1.33
CLN3-260ENST00000637578 GPAT2Q6NUI2 795 aa23.34■■□□□ 1.33
CLN3-260ENST00000637578 FBXO46Q6PJ61 603 aaPredicted RBP23.34■■□□□ 1.33
CLN3-260ENST00000637578 SIPA1L1O43166 1804 aa23.33■■□□□ 1.33
CLN3-260ENST00000637578 DOCK1Q14185 1865 aa23.33■■□□□ 1.33
CLN3-260ENST00000637578 CAP1Q01518 475 aa23.33■■□□□ 1.33
CLN3-260ENST00000637578 OTOP1Q7RTM1 612 aa23.33■■□□□ 1.33
CLN3-260ENST00000637578 ZNF532Q9HCE3 1301 aa23.32■■□□□ 1.32
CLN3-260ENST00000637578 PDHXO00330 501 aa23.32■■□□□ 1.32
CLN3-260ENST00000637578 FASTKD5Q7L8L6 764 aaKnown RBP23.32■■□□□ 1.32
CLN3-260ENST00000637578 CD99L2Q8TCZ2 262 aa23.32■■□□□ 1.32
CLN3-260ENST00000637578 ECHDC1Q9NTX5 307 aa23.32■■□□□ 1.32
CLN3-260ENST00000637578 FRMD4AQ9P2Q2 1039 aaPredicted RBP23.32■■□□□ 1.32
CLN3-260ENST00000637578 HPS5Q9UPZ3 1129 aa23.32■■□□□ 1.32
CLN3-260ENST00000637578 MAGEB6P1A0A0J9YX57 407 aa23.31■■□□□ 1.32
CLN3-260ENST00000637578 TBC1D2Q9BYX2 928 aa23.31■■□□□ 1.32
CLN3-260ENST00000637578 SAP30BPQ9UHR5 308 aaKnown RBP23.31■■□□□ 1.32
CLN3-260ENST00000637578 PHIPQ8WWQ0 1821 aa23.31■■□□□ 1.32
CLN3-260ENST00000637578 ADGRA2Q96PE1 1338 aa23.31■■□□□ 1.32
CLN3-260ENST00000637578 ADD2P35612 726 aa23.31■■□□□ 1.32
CLN3-260ENST00000637578 USP5P45974 858 aa23.31■■□□□ 1.32
CLN3-260ENST00000637578 C17orf99Q6UX52 265 aa23.31■■□□□ 1.32
CLN3-260ENST00000637578 TRIM17Q9Y577 477 aa23.31■■□□□ 1.32
CLN3-260ENST00000637578 HLA-DOAP06340 250 aa23.3■■□□□ 1.32
CLN3-260ENST00000637578 RGS19P49795 217 aa23.3■■□□□ 1.32
CLN3-260ENST00000637578 CCDC84Q86UT8 332 aaPredicted RBP23.3■■□□□ 1.32
CLN3-260ENST00000637578 EHD4Q9H223 541 aa23.3■■□□□ 1.32
CLN3-260ENST00000637578 SLC45A1Q9Y2W3 748 aa23.3■■□□□ 1.32
CLN3-260ENST00000637578 GINM1Q9NU53 330 aa23.29■■□□□ 1.32
CLN3-260ENST00000637578 TRIM75PA6NK02 468 aa23.28■■□□□ 1.32
CLN3-260ENST00000637578 USP17L5A8MUK1 530 aa23.28■■□□□ 1.32
CLN3-260ENST00000637578 JAG1P78504 1218 aa23.28■■□□□ 1.32
CLN3-260ENST00000637578 UBE3CQ15386 1083 aa23.28■■□□□ 1.32
CLN3-260ENST00000637578 CRACR2BQ8N4Y2 399 aaPredicted RBP23.28■■□□□ 1.32
CLN3-260ENST00000637578 ZNF280CQ8ND82 737 aa23.28■■□□□ 1.32
CLN3-260ENST00000637578 DDX24Q9GZR7 859 aaKnown RBP eCLIP23.28■■□□□ 1.322e-6■■■■■ 40.7
CLN3-260ENST00000637578 TATDN1Q6P1N9 297 aa23.27■■□□□ 1.32
CLN3-260ENST00000637578 CRNKL1Q9BZJ0 848 aaKnown RBP23.27■■□□□ 1.32
CLN3-260ENST00000637578 EFCC1Q9HA90 598 aa23.27■■□□□ 1.32
CLN3-260ENST00000637578 PTPN22Q9Y2R2 807 aa23.27■■□□□ 1.32
CLN3-260ENST00000637578 ASNSP08243 561 aa23.27■■□□□ 1.32
CLN3-260ENST00000637578 SPP2Q13103 211 aa23.27■■□□□ 1.32
CLN3-260ENST00000637578 AAMPQ13685 434 aa23.27■■□□□ 1.32
CLN3-260ENST00000637578 TTC6Q86TZ1 520 aa23.27■■□□□ 1.32
CLN3-260ENST00000637578 WDR18Q9BV38 432 aa23.27■■□□□ 1.32
CLN3-260ENST00000637578 SERPINB13Q9UIV8 391 aa23.27■■□□□ 1.32
CLN3-260ENST00000637578 PTPRFP10586 1907 aa23.26■■□□□ 1.31
CLN3-260ENST00000637578 LACTBP83111 547 aaPredicted RBP23.26■■□□□ 1.31
CLN3-260ENST00000637578 SLFNL1Q499Z3 407 aa23.26■■□□□ 1.31
CLN3-260ENST00000637578 LCORLQ8N3X6 602 aa23.26■■□□□ 1.31
CLN3-260ENST00000637578 PROCA1Q8NCQ7 364 aaPredicted RBP23.26■■□□□ 1.31
CLN3-260ENST00000637578 PARK7Q99497 189 aaKnown RBP23.26■■□□□ 1.31
CLN3-260ENST00000637578 TRIM34Q9BYJ4 488 aa23.26■■□□□ 1.31
CLN3-260ENST00000637578 HDAC1Q13547 482 aaPredicted RBP23.25■■□□□ 1.31
CLN3-260ENST00000637578 ARHGEF6Q15052 776 aa23.25■■□□□ 1.31
CLN3-260ENST00000637578 SH3D19Q5HYK7 790 aa23.25■■□□□ 1.31
CLN3-260ENST00000637578 GADL1Q6ZQY3 521 aa23.25■■□□□ 1.31
CLN3-260ENST00000637578 GPATCH3Q96I76 525 aa23.25■■□□□ 1.31
CLN3-260ENST00000637578 CPA4Q9UI42 421 aa23.25■■□□□ 1.31
CLN3-260ENST00000637578 AGTPBP1Q9UPW5 1226 aa23.25■■□□□ 1.31
CLN3-260ENST00000637578 HTTP42858 3142 aa23.25■■□□□ 1.31
CLN3-260ENST00000637578 MYH1P12882 1939 aa23.25■■□□□ 1.31
CLN3-260ENST00000637578 CYP2C8P10632 490 aa23.24■■□□□ 1.31
CLN3-260ENST00000637578 PLCD1P51178 756 aa23.24■■□□□ 1.31
CLN3-260ENST00000637578 SLC4A8Q2Y0W8 1093 aa23.24■■□□□ 1.31
CLN3-260ENST00000637578 AS3MTQ9HBK9 375 aa23.24■■□□□ 1.31
CLN3-260ENST00000637578 DCP1AQ9NPI6 582 aaPredicted RBP23.24■■□□□ 1.31
CLN3-260ENST00000637578 TTC41PQ6P2S7 1318 aa23.24■■□□□ 1.31
CLN3-260ENST00000637578 DDX60LQ5H9U9 1706 aaKnown RBP23.23■■□□□ 1.31
CLN3-260ENST00000637578 CHGBP05060 677 aa23.23■■□□□ 1.31
CLN3-260ENST00000637578 BCRP11274 1271 aa23.23■■□□□ 1.31
CLN3-260ENST00000637578 GABPAQ06546 454 aa23.23■■□□□ 1.31
CLN3-260ENST00000637578 SHROOM1Q2M3G4 852 aaPredicted RBP23.23■■□□□ 1.31
CLN3-260ENST00000637578 ZSCAN25Q6NSZ9 544 aa23.23■■□□□ 1.31
CLN3-260ENST00000637578 ARMT1Q9H993 441 aa23.23■■□□□ 1.31
CLN3-260ENST00000637578 ZBTB21Q9ULJ3 1066 aa23.23■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms