RNA–Protein interactions for RNA: ENST00000623985.3

LINC00643-206, long intergenic non-protein coding RNA 643, humanhuman

TSL 1 (best)

Gene LINC00643, Length 864 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-206ENST00000623985 TGFBRAP1Q8WUH2 860 aa18.02■□□□□ 0.48
LINC00643-206ENST00000623985 SLURP2P0DP57 97 aa18.01■□□□□ 0.47
LINC00643-206ENST00000623985 FBXO46Q6PJ61 603 aaPredicted RBP18.01■□□□□ 0.47
LINC00643-206ENST00000623985 ANKRD23Q86SG2 305 aa18.01■□□□□ 0.47
LINC00643-206ENST00000623985 MAPKAPK5Q8IW41 473 aa18.01■□□□□ 0.47
LINC00643-206ENST00000623985 YTHDC1Q96MU7 727 aaKnown RBP18.01■□□□□ 0.47
LINC00643-206ENST00000623985 PI4KBQ9UBF8 816 aa18.01■□□□□ 0.47
LINC00643-206ENST00000623985 FAM196BA6NMK8 535 aa18■□□□□ 0.47
LINC00643-206ENST00000623985 CXCL11O14625 94 aa18■□□□□ 0.47
LINC00643-206ENST00000623985 DYNLL1P63167 89 aaKnown RBP18■□□□□ 0.47
LINC00643-206ENST00000623985 SP3Q02447 781 aa18■□□□□ 0.47
LINC00643-206ENST00000623985 DNAJC2Q99543 621 aaKnown RBP18■□□□□ 0.47
LINC00643-206ENST00000623985 A0A0G2JLL6 359 aaPredicted RBP17.99■□□□□ 0.47
LINC00643-206ENST00000623985 TLR2O60603 784 aa17.99■□□□□ 0.47
LINC00643-206ENST00000623985 ATP5JP18859 108 aa17.99■□□□□ 0.47
LINC00643-206ENST00000623985 MOGSQ13724 837 aa17.99■□□□□ 0.47
LINC00643-206ENST00000623985 PRRT2Q7Z6L0 340 aaPredicted RBP17.99■□□□□ 0.47
LINC00643-206ENST00000623985 MIGA1Q8NAN2 632 aa17.99■□□□□ 0.47
LINC00643-206ENST00000623985 CD99L2Q8TCZ2 262 aa17.99■□□□□ 0.47
LINC00643-206ENST00000623985 BCL11AQ9H165 835 aa17.99■□□□□ 0.47
LINC00643-206ENST00000623985 HPS5Q9UPZ3 1129 aa17.99■□□□□ 0.47
LINC00643-206ENST00000623985 AFG3L2Q9Y4W6 797 aa17.99■□□□□ 0.47
LINC00643-206ENST00000623985 TRIM17Q9Y577 477 aa17.99■□□□□ 0.47
LINC00643-206ENST00000623985 ZHX2Q9Y6X8 837 aa17.99■□□□□ 0.47
LINC00643-206ENST00000623985 BRCA2P51587 3418 aa17.99■□□□□ 0.47
LINC00643-206ENST00000623985 GOLIM4O00461 696 aa17.98■□□□□ 0.47
LINC00643-206ENST00000623985 HLA-DOAP06340 250 aa17.98■□□□□ 0.47
LINC00643-206ENST00000623985 PDE6AP16499 860 aa17.98■□□□□ 0.47
LINC00643-206ENST00000623985 OTOP1Q7RTM1 612 aa17.98■□□□□ 0.47
LINC00643-206ENST00000623985 TBC1D2Q9BYX2 928 aa17.98■□□□□ 0.47
LINC00643-206ENST00000623985 PAG1Q9NWQ8 432 aa17.98■□□□□ 0.47
LINC00643-206ENST00000623985 DOCK3Q8IZD9 2030 aa17.98■□□□□ 0.47
LINC00643-206ENST00000623985 ADGRA2Q96PE1 1338 aa17.98■□□□□ 0.47
LINC00643-206ENST00000623985 PDHXO00330 501 aa17.97■□□□□ 0.47
LINC00643-206ENST00000623985 CAP2P40123 477 aa17.97■□□□□ 0.47
LINC00643-206ENST00000623985 USP5P45974 858 aa17.97■□□□□ 0.47
LINC00643-206ENST00000623985 SLC9C2Q5TAH2 1124 aa17.97■□□□□ 0.47
LINC00643-206ENST00000623985 FASTKD5Q7L8L6 764 aaKnown RBP17.97■□□□□ 0.47
LINC00643-206ENST00000623985 METTL16Q86W50 562 aaKnown RBP17.97■□□□□ 0.47
LINC00643-206ENST00000623985 HAUS7Q99871 368 aa17.97■□□□□ 0.47
LINC00643-206ENST00000623985 RIOK1Q9BRS2 568 aaKnown RBP17.97■□□□□ 0.47
LINC00643-206ENST00000623985 TRIM34Q9BYJ4 488 aa17.97■□□□□ 0.47
LINC00643-206ENST00000623985 DCTPP1Q9H773 170 aa17.97■□□□□ 0.47
LINC00643-206ENST00000623985 PARP14Q460N5 1801 aa17.96■□□□□ 0.47
LINC00643-206ENST00000623985 SMARCA5O60264 1052 aaPredicted RBP17.96■□□□□ 0.47
LINC00643-206ENST00000623985 CRACR2BQ8N4Y2 399 aaPredicted RBP17.96■□□□□ 0.47
LINC00643-206ENST00000623985 PARK7Q99497 189 aaKnown RBP17.96■□□□□ 0.47
LINC00643-206ENST00000623985 BOLA2Q9H3K6 86 aa17.96■□□□□ 0.47
LINC00643-206ENST00000623985 DNAJC18Q9H819 358 aa17.96■□□□□ 0.47
LINC00643-206ENST00000623985 FRMD4AQ9P2Q2 1039 aaPredicted RBP17.96■□□□□ 0.47
LINC00643-206ENST00000623985 SAP30BPQ9UHR5 308 aaKnown RBP17.96■□□□□ 0.47
LINC00643-206ENST00000623985 PALD1Q9ULE6 856 aa17.96■□□□□ 0.47
LINC00643-206ENST00000623985 ZNF532Q9HCE3 1301 aa17.96■□□□□ 0.46
LINC00643-206ENST00000623985 MAGEB6P1A0A0J9YX57 407 aa17.95■□□□□ 0.46
LINC00643-206ENST00000623985 TCRBV5S4A2TA0A5A2 114 aa17.95■□□□□ 0.46
LINC00643-206ENST00000623985 TRIM75PA6NK02 468 aa17.95■□□□□ 0.46
LINC00643-206ENST00000623985 ARHGEF6Q15052 776 aa17.95■□□□□ 0.46
LINC00643-206ENST00000623985 GPAT2Q6NUI2 795 aa17.95■□□□□ 0.46
LINC00643-206ENST00000623985 FOXP4Q8IVH2 680 aaPredicted RBP17.95■□□□□ 0.46
LINC00643-206ENST00000623985 EDC3Q96F86 508 aaKnown RBP17.95■□□□□ 0.46
LINC00643-206ENST00000623985 EFCC1Q9HA90 598 aa17.95■□□□□ 0.46
LINC00643-206ENST00000623985 SLC45A1Q9Y2W3 748 aa17.95■□□□□ 0.46
LINC00643-206ENST00000623985 RGS19P49795 217 aa17.94■□□□□ 0.46
LINC00643-206ENST00000623985 GADL1Q6ZQY3 521 aa17.94■□□□□ 0.46
LINC00643-206ENST00000623985 CCDC84Q86UT8 332 aaPredicted RBP17.94■□□□□ 0.46
LINC00643-206ENST00000623985 GPATCH3Q96I76 525 aa17.94■□□□□ 0.46
LINC00643-206ENST00000623985 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.94■□□□□ 0.46
LINC00643-206ENST00000623985 EHD4Q9H223 541 aa17.94■□□□□ 0.46
LINC00643-206ENST00000623985 PCDHB15Q9Y5E8 787 aa17.94■□□□□ 0.46
LINC00643-206ENST00000623985 GREB1LQ9C091 1923 aaPredicted RBP17.94■□□□□ 0.46
LINC00643-206ENST00000623985 USP17L5A8MUK1 530 aa17.93■□□□□ 0.46
LINC00643-206ENST00000623985 ASNSP08243 561 aa17.93■□□□□ 0.46
LINC00643-206ENST00000623985 ADD2P35612 726 aa17.93■□□□□ 0.46
LINC00643-206ENST00000623985 LACTBP83111 547 aaPredicted RBP17.93■□□□□ 0.46
LINC00643-206ENST00000623985 CAP1Q01518 475 aa17.93■□□□□ 0.46
LINC00643-206ENST00000623985 RRP1BQ14684 758 aaKnown RBP17.93■□□□□ 0.46
LINC00643-206ENST00000623985 KIF22Q14807 665 aa17.93■□□□□ 0.46
LINC00643-206ENST00000623985 C17orf99Q6UX52 265 aa17.93■□□□□ 0.46
LINC00643-206ENST00000623985 PROCA1Q8NCQ7 364 aaPredicted RBP17.93■□□□□ 0.46
LINC00643-206ENST00000623985 ZNF280CQ8ND82 737 aa17.93■□□□□ 0.46
LINC00643-206ENST00000623985 CRNKL1Q9BZJ0 848 aaKnown RBP17.93■□□□□ 0.46
LINC00643-206ENST00000623985 AS3MTQ9HBK9 375 aa17.93■□□□□ 0.46
LINC00643-206ENST00000623985 ECHDC1Q9NTX5 307 aa17.93■□□□□ 0.46
LINC00643-206ENST00000623985 GINM1Q9NU53 330 aa17.93■□□□□ 0.46
LINC00643-206ENST00000623985 PTPN22Q9Y2R2 807 aa17.93■□□□□ 0.46
LINC00643-206ENST00000623985 MYH4Q9Y623 1939 aa17.93■□□□□ 0.46
LINC00643-206ENST00000623985 PLXNB2O15031 1838 aa17.93■□□□□ 0.46
LINC00643-206ENST00000623985 SLC4A8Q2Y0W8 1093 aa17.92■□□□□ 0.46
LINC00643-206ENST00000623985 CRBNQ96SW2 442 aa17.92■□□□□ 0.46
LINC00643-206ENST00000623985 SERPINB13Q9UIV8 391 aa17.92■□□□□ 0.46
LINC00643-206ENST00000623985 AGTPBP1Q9UPW5 1226 aa17.92■□□□□ 0.46
LINC00643-206ENST00000623985 GNRH1P01148 92 aa17.91■□□□□ 0.46
LINC00643-206ENST00000623985 TTC6Q86TZ1 520 aa17.91■□□□□ 0.46
LINC00643-206ENST00000623985 CPA4Q9UI42 421 aa17.91■□□□□ 0.46
LINC00643-206ENST00000623985 A0A0G2JMZ2 1700 aa17.9■□□□□ 0.46
LINC00643-206ENST00000623985 CYP2C8P10632 490 aa17.9■□□□□ 0.46
LINC00643-206ENST00000623985 SOX10P56693 466 aa17.9■□□□□ 0.46
LINC00643-206ENST00000623985 SPP2Q13103 211 aa17.9■□□□□ 0.46
LINC00643-206ENST00000623985 ZSCAN25Q6NSZ9 544 aa17.9■□□□□ 0.46
LINC00643-206ENST00000623985 LCORLQ8N3X6 602 aa17.9■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms