RNA–Protein interactions for RNA: ENST00000616395.4

TRAPPC3-209, Transcript of trafficking protein particle complex 3, humanhuman

TSL 3 BASIC

Gene TRAPPC3, Length 1,336 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC3-209ENST00000616395 COL6A1P12109 1028 aa21.86■■□□□ 1.09
TRAPPC3-209ENST00000616395 GCLCP48506 637 aaPredicted RBP21.86■■□□□ 1.09
TRAPPC3-209ENST00000616395 LRRC26Q2I0M4 334 aa21.86■■□□□ 1.09
TRAPPC3-209ENST00000616395 MAP3K21Q5TCX8 1036 aa21.86■■□□□ 1.09
TRAPPC3-209ENST00000616395 PRKAR2AP13861 404 aaKnown RBP21.85■■□□□ 1.09
TRAPPC3-209ENST00000616395 SLC5A1P13866 664 aa21.85■■□□□ 1.09
TRAPPC3-209ENST00000616395 CYP2B6P20813 491 aa21.85■■□□□ 1.09
TRAPPC3-209ENST00000616395 PROCA1Q8NCQ7 364 aaPredicted RBP21.85■■□□□ 1.09
TRAPPC3-209ENST00000616395 RFX7Q2KHR2 1363 aa21.85■■□□□ 1.09
TRAPPC3-209ENST00000616395 LPIN2Q92539 896 aa21.84■■□□□ 1.09
TRAPPC3-209ENST00000616395 RCAN3Q9UKA8 241 aa21.84■■□□□ 1.09
TRAPPC3-209ENST00000616395 MYH13Q9UKX3 1938 aa21.84■■□□□ 1.09
TRAPPC3-209ENST00000616395 SLFN5Q08AF3 891 aa21.83■■□□□ 1.09
TRAPPC3-209ENST00000616395 SPP2Q13103 211 aa21.83■■□□□ 1.09
TRAPPC3-209ENST00000616395 ASCC2Q9H1I8 757 aaPredicted RBP21.83■■□□□ 1.09
TRAPPC3-209ENST00000616395 DDX4Q9NQI0 724 aaKnown RBP21.83■■□□□ 1.09
TRAPPC3-209ENST00000616395 ZNF697Q5TEC3 545 aa21.82■■□□□ 1.08
TRAPPC3-209ENST00000616395 PLXNB2O15031 1838 aa21.82■■□□□ 1.08
TRAPPC3-209ENST00000616395 SALL1Q9NSC2 1324 aa21.82■■□□□ 1.08
TRAPPC3-209ENST00000616395 HMGCS2P54868 508 aa21.81■■□□□ 1.08
TRAPPC3-209ENST00000616395 PICALMQ13492 652 aa21.81■■□□□ 1.08
TRAPPC3-209ENST00000616395 CDX2Q99626 313 aaPredicted RBP21.81■■□□□ 1.08
TRAPPC3-209ENST00000616395 GAKO14976 1311 aa21.81■■□□□ 1.08
TRAPPC3-209ENST00000616395 FAM196BA6NMK8 535 aa21.8■■□□□ 1.08
TRAPPC3-209ENST00000616395 PABPC4Q13310 644 aaKnown RBP eCLIP21.8■■□□□ 1.081e-6■■■□□ 16.3
TRAPPC3-209ENST00000616395 LHX8Q68G74 356 aa21.8■■□□□ 1.08
TRAPPC3-209ENST00000616395 MAFAQ8NHW3 353 aaPredicted RBP21.8■■□□□ 1.08
TRAPPC3-209ENST00000616395 LBHD1Q9BQE6 289 aaPredicted RBP21.8■■□□□ 1.08
TRAPPC3-209ENST00000616395 MORF4L1Q9UBU8 362 aa21.8■■□□□ 1.08
TRAPPC3-209ENST00000616395 LOC285556D6RIA3 1793 aa21.8■■□□□ 1.08
TRAPPC3-209ENST00000616395 EYA2O00167 538 aa21.8■■□□□ 1.08
TRAPPC3-209ENST00000616395 CACNB2Q08289 660 aaPredicted RBP21.8■■□□□ 1.08
TRAPPC3-209ENST00000616395 ZNF280CQ8ND82 737 aa21.8■■□□□ 1.08
TRAPPC3-209ENST00000616395 PEX10O60683 326 aa21.79■■□□□ 1.08
TRAPPC3-209ENST00000616395 XRCC5P13010 732 aaKnown RBP21.79■■□□□ 1.08
TRAPPC3-209ENST00000616395 CCND3P30281 292 aaPredicted RBP21.79■■□□□ 1.08
TRAPPC3-209ENST00000616395 NUDT12Q9BQG2 462 aa21.79■■□□□ 1.08
TRAPPC3-209ENST00000616395 GNL3LQ9NVN8 582 aaKnown RBP21.79■■□□□ 1.08
TRAPPC3-209ENST00000616395 PRUNE2Q8WUY3 3088 aa21.78■■□□□ 1.08
TRAPPC3-209ENST00000616395 TBC1D12O60347 775 aa21.78■■□□□ 1.08
TRAPPC3-209ENST00000616395 ZKSCAN1P17029 563 aaPredicted RBP21.78■■□□□ 1.08
TRAPPC3-209ENST00000616395 SOCS4Q8WXH5 440 aa21.78■■□□□ 1.08
TRAPPC3-209ENST00000616395 XPO5Q9HAV4 1204 aaKnown RBP eCLIP21.78■■□□□ 1.08
TRAPPC3-209ENST00000616395 DENND2AQ9ULE3 1009 aa21.78■■□□□ 1.08
TRAPPC3-209ENST00000616395 DNAH12Q6ZR08 3092 aa21.77■■□□□ 1.08
TRAPPC3-209ENST00000616395 RFX5P48382 616 aaPredicted RBP21.77■■□□□ 1.07
TRAPPC3-209ENST00000616395 ATG9AQ7Z3C6 839 aa21.77■■□□□ 1.07
TRAPPC3-209ENST00000616395 DZIP1Q86YF9 867 aaKnown RBP21.77■■□□□ 1.07
TRAPPC3-209ENST00000616395 OSBPL5Q9H0X9 879 aaPredicted RBP21.77■■□□□ 1.07
TRAPPC3-209ENST00000616395 BTDP43251 543 aa21.76■■□□□ 1.07
TRAPPC3-209ENST00000616395 PHKA1P46020 1223 aa21.76■■□□□ 1.07
TRAPPC3-209ENST00000616395 CCL14Q16627 93 aa21.76■■□□□ 1.07
TRAPPC3-209ENST00000616395 ATP2B3Q16720 1220 aa21.76■■□□□ 1.07
TRAPPC3-209ENST00000616395 TRMT44Q8IYL2 757 aaKnown RBP21.76■■□□□ 1.07
TRAPPC3-209ENST00000616395 TRMT2AQ8IZ69 625 aaKnown RBP21.76■■□□□ 1.07
TRAPPC3-209ENST00000616395 SEMA6BQ9H3T3 888 aa21.76■■□□□ 1.07
TRAPPC3-209ENST00000616395 SEMA3EO15041 775 aa21.75■■□□□ 1.07
TRAPPC3-209ENST00000616395 SH3D19Q5HYK7 790 aa21.75■■□□□ 1.07
TRAPPC3-209ENST00000616395 GPRC5AQ8NFJ5 357 aa21.75■■□□□ 1.07
TRAPPC3-209ENST00000616395 MYLIPQ8WY64 445 aa21.75■■□□□ 1.07
TRAPPC3-209ENST00000616395 SENP6Q9GZR1 1112 aaPredicted RBP21.75■■□□□ 1.07
TRAPPC3-209ENST00000616395 TXNRD2Q9NNW7 524 aa21.75■■□□□ 1.07
TRAPPC3-209ENST00000616395 MYH2Q9UKX2 1941 aa21.75■■□□□ 1.07
TRAPPC3-209ENST00000616395 CT47B1P0C2W7 299 aaPredicted RBP21.74■■□□□ 1.07
TRAPPC3-209ENST00000616395 IRX3P78415 501 aaPredicted RBP21.74■■□□□ 1.07
TRAPPC3-209ENST00000616395 PDE3AQ14432 1141 aa21.74■■□□□ 1.07
TRAPPC3-209ENST00000616395 RRP1BQ14684 758 aaKnown RBP21.74■■□□□ 1.07
TRAPPC3-209ENST00000616395 ZGPATQ8N5A5 531 aaKnown RBP21.74■■□□□ 1.07
TRAPPC3-209ENST00000616395 SSH1Q8WYL5 1049 aa21.74■■□□□ 1.07
TRAPPC3-209ENST00000616395 USP6NLQ92738 828 aa21.74■■□□□ 1.07
TRAPPC3-209ENST00000616395 FAM163AQ96GL9 167 aaPredicted RBP21.74■■□□□ 1.07
TRAPPC3-209ENST00000616395 P2RX7Q99572 595 aaKnown RBP21.74■■□□□ 1.07
TRAPPC3-209ENST00000616395 TBC1D2Q9BYX2 928 aa21.74■■□□□ 1.07
TRAPPC3-209ENST00000616395 USP17L5A8MUK1 530 aa21.73■■□□□ 1.07
TRAPPC3-209ENST00000616395 CAP2P40123 477 aa21.73■■□□□ 1.07
TRAPPC3-209ENST00000616395 SLF2Q8IX21 1173 aa21.73■■□□□ 1.07
TRAPPC3-209ENST00000616395 MRPL50Q8N5N7 158 aaKnown RBP21.73■■□□□ 1.07
TRAPPC3-209ENST00000616395 ABCF2Q9UG63 623 aa21.73■■□□□ 1.07
TRAPPC3-209ENST00000616395 COL9A1P20849 921 aa21.72■■□□□ 1.07
TRAPPC3-209ENST00000616395 ATN1P54259 1190 aaPredicted RBP21.72■■□□□ 1.07
TRAPPC3-209ENST00000616395 RHBDL3P58872 404 aa21.72■■□□□ 1.07
TRAPPC3-209ENST00000616395 SHHQ15465 462 aa21.72■■□□□ 1.07
TRAPPC3-209ENST00000616395 SYMPKQ92797 1274 aaKnown RBP21.72■■□□□ 1.07
TRAPPC3-209ENST00000616395 USP44Q9H0E7 712 aa21.72■■□□□ 1.07
TRAPPC3-209ENST00000616395 SIL1Q9H173 461 aa21.72■■□□□ 1.07
TRAPPC3-209ENST00000616395 MAST2Q6P0Q8 1798 aa21.72■■□□□ 1.07
TRAPPC3-209ENST00000616395 MROH7-TTC4A0A0A0MT08 1334 aa21.71■■□□□ 1.07
TRAPPC3-209ENST00000616395 MAPK4P31152 587 aa21.71■■□□□ 1.07
TRAPPC3-209ENST00000616395 RGS2P41220 211 aa21.71■■□□□ 1.07
TRAPPC3-209ENST00000616395 HERVK_113P62684 666 aa21.71■■□□□ 1.07
TRAPPC3-209ENST00000616395 MTMR2Q13614 643 aa21.71■■□□□ 1.07
TRAPPC3-209ENST00000616395 TTYH1Q9H313 450 aaPredicted RBP21.71■■□□□ 1.07
TRAPPC3-209ENST00000616395 CEP126Q9P2H0 1117 aa21.71■■□□□ 1.07
TRAPPC3-209ENST00000616395 RBPJLQ9UBG7 517 aa21.71■■□□□ 1.07
TRAPPC3-209ENST00000616395 PRKAG2Q9UGJ0 569 aa21.71■■□□□ 1.07
TRAPPC3-209ENST00000616395 HOXA7P31268 230 aaPredicted RBP21.7■■□□□ 1.06
TRAPPC3-209ENST00000616395 Q3C1V9 767 aa21.7■■□□□ 1.06
TRAPPC3-209ENST00000616395 C9orf50Q5SZB4 431 aa21.7■■□□□ 1.06
TRAPPC3-209ENST00000616395 MORN1Q5T089 497 aa21.7■■□□□ 1.06
TRAPPC3-209ENST00000616395 GPR142Q7Z601 462 aa21.7■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms