RNA–Protein interactions for RNA: ENST00000602164.5

USF2-215, Transcript of upstream transcription factor 2, c-fos interacting, human

TSL 3

Gene USF2, Length 582 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USF2-215	ENST00000602164	RNF186	Q9NXI6	227 aa		32.39	■■■□□ 2.78
USF2-215	ENST00000602164	PI4KB	Q9UBF8	816 aa		32.39	■■■□□ 2.78
USF2-215	ENST00000602164	SREBF2	Q12772	1141 aa		32.38	■■■□□ 2.77
USF2-215	ENST00000602164	MS4A4A	Q96JQ5	239 aa		32.38	■■■□□ 2.77
USF2-215	ENST00000602164	PUS7L	Q9H0K6	701 aa	Known RBP	32.38	■■■□□ 2.77
USF2-215	ENST00000602164	SAGE1	Q9NXZ1	904 aa		32.38	■■■□□ 2.77
USF2-215	ENST00000602164	HERC5	Q9UII4	1024 aa	Known RBP	32.38	■■■□□ 2.77
USF2-215	ENST00000602164	PLEKHM2	Q8IWE5	1019 aa		32.37	■■■□□ 2.77
USF2-215	ENST00000602164	XPO5	Q9HAV4	1204 aa	Known RBP eCLIP	32.37	■■■□□ 2.77
USF2-215	ENST00000602164	TSKS	Q9UJT2	592 aa		32.37	■■■□□ 2.77
USF2-215	ENST00000602164	TESPA1	A2RU30	521 aa	Predicted RBP	32.36	■■■□□ 2.77
USF2-215	ENST00000602164	RNF113A	O15541	343 aa	Known RBP	32.36	■■■□□ 2.77
USF2-215	ENST00000602164	PPIL2	Q13356	520 aa		32.36	■■■□□ 2.77
USF2-215	ENST00000602164	RRP1B	Q14684	758 aa	Known RBP	32.36	■■■□□ 2.77
USF2-215	ENST00000602164	SCYL3	Q8IZE3	742 aa		32.36	■■■□□ 2.77
USF2-215	ENST00000602164	SDR42E1	Q8WUS8	393 aa		32.36	■■■□□ 2.77
USF2-215	ENST00000602164	ZFY	P08048	801 aa	Predicted RBP	32.35	■■■□□ 2.77
USF2-215	ENST00000602164	PPAT	Q06203	517 aa		32.35	■■■□□ 2.77
USF2-215	ENST00000602164	APPBP2	Q92624	585 aa		32.35	■■■□□ 2.77
USF2-215	ENST00000602164	OSBP2	Q969R2	916 aa		32.35	■■■□□ 2.77
USF2-215	ENST00000602164	OSBPL3	Q9H4L5	887 aa		32.35	■■■□□ 2.77
USF2-215	ENST00000602164	DCP1A	Q9NPI6	582 aa	Predicted RBP	32.35	■■■□□ 2.77
USF2-215	ENST00000602164	PRKAB2	O43741	272 aa		32.34	■■■□□ 2.77
USF2-215	ENST00000602164	CTNND1	O60716	968 aa	Known RBP	32.34	■■■□□ 2.77
USF2-215	ENST00000602164	LBX1	P52954	281 aa		32.34	■■■□□ 2.77
USF2-215	ENST00000602164	INHBE	P58166	350 aa		32.34	■■■□□ 2.77
USF2-215	ENST00000602164	SLC4A8	Q2Y0W8	1093 aa		32.34	■■■□□ 2.77
USF2-215	ENST00000602164	FOXP4	Q8IVH2	680 aa	Predicted RBP	32.34	■■■□□ 2.77
USF2-215	ENST00000602164	IGF2BP3	O00425	579 aa	Known RBP eCLIP	32.33	■■■□□ 2.77
USF2-215	ENST00000602164	IRF6	O14896	467 aa		32.33	■■■□□ 2.77
USF2-215	ENST00000602164	TRPA1	O75762	1119 aa		32.33	■■■□□ 2.77
USF2-215	ENST00000602164	FSD1	Q9BTV5	496 aa		32.33	■■■□□ 2.77
USF2-215	ENST00000602164	PHIP	Q8WWQ0	1821 aa		32.33	■■■□□ 2.77
USF2-215	ENST00000602164	HLA-DOA	P06340	250 aa		32.32	■■■□□ 2.76
USF2-215	ENST00000602164	IFNL1	Q8IU54	200 aa		32.32	■■■□□ 2.76
USF2-215	ENST00000602164	BRI3BP	Q8WY22	251 aa		32.32	■■■□□ 2.76
USF2-215	ENST00000602164	PTPN18	Q99952	460 aa		32.32	■■■□□ 2.76
USF2-215	ENST00000602164	EHD4	Q9H223	541 aa		32.32	■■■□□ 2.76
USF2-215	ENST00000602164	PRDM10	Q9NQV6	1147 aa		32.32	■■■□□ 2.76
USF2-215	ENST00000602164	ATAD5	Q96QE3	1844 aa		32.32	■■■□□ 2.76
USF2-215	ENST00000602164	PTPRA	P18433	802 aa		32.31	■■■□□ 2.76
USF2-215	ENST00000602164	GTF2A2	P52657	109 aa		32.31	■■■□□ 2.76
USF2-215	ENST00000602164	KCNH4	Q9UQ05	1017 aa		32.31	■■■□□ 2.76
USF2-215	ENST00000602164	PDE4A	P27815	886 aa		32.3	■■■□□ 2.76
USF2-215	ENST00000602164	EVI5L	Q96CN4	794 aa		32.3	■■■□□ 2.76
USF2-215	ENST00000602164	STRBP	Q96SI9	672 aa	Known RBP	32.3	■■■□□ 2.76
USF2-215	ENST00000602164	ATP8A2	Q9NTI2	1148 aa		32.3	■■■□□ 2.76
USF2-215	ENST00000602164	FRMD4A	Q9P2Q2	1039 aa	Predicted RBP	32.3	■■■□□ 2.76
USF2-215	ENST00000602164		M0R2C6	588 aa		32.29	■■■□□ 2.76
USF2-215	ENST00000602164	CAP2	P40123	477 aa		32.29	■■■□□ 2.76
USF2-215	ENST00000602164	PLCD1	P51178	756 aa		32.29	■■■□□ 2.76
USF2-215	ENST00000602164	EVX2	Q03828	476 aa		32.29	■■■□□ 2.76
USF2-215	ENST00000602164	LRRFIP1	Q32MZ4	808 aa	Known RBP	32.29	■■■□□ 2.76
USF2-215	ENST00000602164	BAZ2A	Q9UIF9	1905 aa	Known RBP	32.28	■■■□□ 2.76
USF2-215	ENST00000602164	CCL15-CCL14	A0A0B4J2E2	113 aa		32.28	■■■□□ 2.76
USF2-215	ENST00000602164	CCL15	Q16663	113 aa		32.28	■■■□□ 2.76
USF2-215	ENST00000602164	ZMYM1	Q5SVZ6	1142 aa		32.28	■■■□□ 2.76
USF2-215	ENST00000602164	TTC6	Q86TZ1	520 aa		32.28	■■■□□ 2.76
USF2-215	ENST00000602164	CRACR2B	Q8N4Y2	399 aa	Predicted RBP	32.28	■■■□□ 2.76
USF2-215	ENST00000602164	CFHR5	Q9BXR6	569 aa		32.28	■■■□□ 2.76
USF2-215	ENST00000602164	PICK1	Q9NRD5	415 aa		32.28	■■■□□ 2.76
USF2-215	ENST00000602164	MCM9	Q9NXL9	1143 aa		32.28	■■■□□ 2.76
USF2-215	ENST00000602164	SERPINB13	Q9UIV8	391 aa		32.28	■■■□□ 2.76
USF2-215	ENST00000602164	JAG1	P78504	1218 aa		32.27	■■■□□ 2.76
USF2-215	ENST00000602164	SNAPC2	Q13487	334 aa		32.27	■■■□□ 2.76
USF2-215	ENST00000602164	SLC4A4	Q9Y6R1	1079 aa		32.27	■■■□□ 2.76
USF2-215	ENST00000602164	GABPA	Q06546	454 aa		32.26	■■■□□ 2.75
USF2-215	ENST00000602164	COL13A1	Q5TAT6	717 aa	Predicted RBP	32.26	■■■□□ 2.75
USF2-215	ENST00000602164	CCDC84	Q86UT8	332 aa	Predicted RBP	32.26	■■■□□ 2.75
USF2-215	ENST00000602164	SEC62	Q99442	399 aa	Known RBP	32.26	■■■□□ 2.75
USF2-215	ENST00000602164	ZHX2	Q9Y6X8	837 aa		32.26	■■■□□ 2.75
USF2-215	ENST00000602164	GPAA1	O43292	621 aa		32.25	■■■□□ 2.75
USF2-215	ENST00000602164	CYP2D6	P10635	497 aa		32.25	■■■□□ 2.75
USF2-215	ENST00000602164	CETP	P11597	493 aa		32.25	■■■□□ 2.75
USF2-215	ENST00000602164	MOGS	Q13724	837 aa		32.25	■■■□□ 2.75
USF2-215	ENST00000602164	TATDN1	Q6P1N9	297 aa		32.25	■■■□□ 2.75
USF2-215	ENST00000602164	AFG3L2	Q9Y4W6	797 aa		32.25	■■■□□ 2.75
USF2-215	ENST00000602164	PTPRF	P10586	1907 aa		32.25	■■■□□ 2.75
USF2-215	ENST00000602164	ALDH1A1	P00352	501 aa		32.24	■■■□□ 2.75
USF2-215	ENST00000602164	POLR3D	P05423	398 aa	Predicted RBP	32.24	■■■□□ 2.75
USF2-215	ENST00000602164	SHROOM1	Q2M3G4	852 aa	Predicted RBP	32.24	■■■□□ 2.75
USF2-215	ENST00000602164	TRIM34	Q9BYJ4	488 aa		32.24	■■■□□ 2.75
USF2-215	ENST00000602164	GSG1L2	A8MUP6	293 aa		32.23	■■■□□ 2.75
USF2-215	ENST00000602164	FAM43A	Q8N2R8	423 aa		32.23	■■■□□ 2.75
USF2-215	ENST00000602164	R3HDML	Q9H3Y0	253 aa		32.23	■■■□□ 2.75
USF2-215	ENST00000602164	CXCL11	O14625	94 aa		32.22	■■■□□ 2.75
USF2-215	ENST00000602164	TBC1D8	O95759	1140 aa		32.22	■■■□□ 2.75
USF2-215	ENST00000602164	SHMT1	P34896	483 aa		32.22	■■■□□ 2.75
USF2-215	ENST00000602164	TICAM2	Q86XR7	235 aa		32.22	■■■□□ 2.75
USF2-215	ENST00000602164	SMIM22	K7EJ46	135 aa		32.21	■■■□□ 2.75
USF2-215	ENST00000602164	GDF11	O95390	407 aa		32.21	■■■□□ 2.75
USF2-215	ENST00000602164	EPB41L4A	Q9HCS5	686 aa	Predicted RBP	32.21	■■■□□ 2.75
USF2-215	ENST00000602164	CYP2D7	A0A087X1C5	515 aa		32.2	■■■□□ 2.75
USF2-215	ENST00000602164		A0A0G2JLL6	359 aa	Predicted RBP	32.2	■■■□□ 2.75
USF2-215	ENST00000602164	BTBD19	C9JJ37	291 aa		32.2	■■■□□ 2.75
USF2-215	ENST00000602164	USP17L12	C9JPN9	530 aa		32.2	■■■□□ 2.75
USF2-215	ENST00000602164	USP17L21	D6R901	530 aa		32.2	■■■□□ 2.75
USF2-215	ENST00000602164	C12orf60	Q5U649	245 aa		32.2	■■■□□ 2.75
USF2-215	ENST00000602164	PRRT2	Q7Z6L0	340 aa	Predicted RBP	32.2	■■■□□ 2.75
USF2-215	ENST00000602164	GINM1	Q9NU53	330 aa		32.2	■■■□□ 2.75

Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms