RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 CRNKL1Q9BZJ0 848 aaKnown RBP23.53■■□□□ 1.36
SHKBP1-221ENST00000599833 PI4KBQ9UBF8 816 aa23.53■■□□□ 1.36
SHKBP1-221ENST00000599833 CENPBP07199 599 aaPredicted RBP23.52■■□□□ 1.36
SHKBP1-221ENST00000599833 HSPA1AP0DMV8 641 aaKnown RBP23.52■■□□□ 1.36
SHKBP1-221ENST00000599833 HSPA1BP0DMV9 641 aaKnown RBP23.52■■□□□ 1.36
SHKBP1-221ENST00000599833 ZBTB48P10074 688 aaPredicted RBP23.52■■□□□ 1.36
SHKBP1-221ENST00000599833 GSPT1P15170 499 aaKnown RBP23.52■■□□□ 1.36
SHKBP1-221ENST00000599833 USP5P45974 858 aa23.52■■□□□ 1.36
SHKBP1-221ENST00000599833 OPTNQ96CV9 577 aa23.52■■□□□ 1.36
SHKBP1-221ENST00000599833 FSD1Q9BTV5 496 aa23.52■■□□□ 1.36
SHKBP1-221ENST00000599833 PTPRFP10586 1907 aa23.52■■□□□ 1.36
SHKBP1-221ENST00000599833 SMIM22K7EJ46 135 aa23.51■■□□□ 1.35
SHKBP1-221ENST00000599833 FOXP2O15409 715 aa23.51■■□□□ 1.35
SHKBP1-221ENST00000599833 PLCD1P51178 756 aa23.51■■□□□ 1.35
SHKBP1-221ENST00000599833 JAG1P78504 1218 aa23.51■■□□□ 1.35
SHKBP1-221ENST00000599833 MKRN3Q13064 507 aaKnown RBP23.51■■□□□ 1.35
SHKBP1-221ENST00000599833 HERC5Q9UII4 1024 aaKnown RBP23.51■■□□□ 1.35
SHKBP1-221ENST00000599833 TM4SF4P48230 202 aa23.5■■□□□ 1.35
SHKBP1-221ENST00000599833 MAP2K1Q02750 393 aaPredicted RBP23.5■■□□□ 1.35
SHKBP1-221ENST00000599833 GABPAQ06546 454 aa23.5■■□□□ 1.35
SHKBP1-221ENST00000599833 SLC4A8Q2Y0W8 1093 aa23.5■■□□□ 1.35
SHKBP1-221ENST00000599833 MS4A4AQ96JQ5 239 aa23.5■■□□□ 1.35
SHKBP1-221ENST00000599833 EHD4Q9H223 541 aa23.5■■□□□ 1.35
SHKBP1-221ENST00000599833 CSADQ9Y600 493 aa23.5■■□□□ 1.35
SHKBP1-221ENST00000599833 TESPA1A2RU30 521 aaPredicted RBP23.49■■□□□ 1.35
SHKBP1-221ENST00000599833 GSG1L2A8MUP6 293 aa23.49■■□□□ 1.35
SHKBP1-221ENST00000599833 FOXN1O15353 648 aa23.49■■□□□ 1.35
SHKBP1-221ENST00000599833 GPAA1O43292 621 aa23.49■■□□□ 1.35
SHKBP1-221ENST00000599833 CYP2D6P10635 497 aa23.49■■□□□ 1.35
SHKBP1-221ENST00000599833 SHROOM1Q2M3G4 852 aaPredicted RBP23.49■■□□□ 1.35
SHKBP1-221ENST00000599833 CENPQQ7L2Z9 268 aaPredicted RBP23.49■■□□□ 1.35
SHKBP1-221ENST00000599833 SKAP1Q86WV1 359 aa23.49■■□□□ 1.35
SHKBP1-221ENST00000599833 TICAM2Q86XR7 235 aa23.49■■□□□ 1.35
SHKBP1-221ENST00000599833 FOXP4Q8IVH2 680 aaPredicted RBP23.49■■□□□ 1.35
SHKBP1-221ENST00000599833 AIDAQ96BJ3 306 aa23.49■■□□□ 1.35
SHKBP1-221ENST00000599833 XPO5Q9HAV4 1204 aaKnown RBP eCLIP23.49■■□□□ 1.35
SHKBP1-221ENST00000599833 EPB41L4AQ9HCS5 686 aaPredicted RBP23.49■■□□□ 1.35
SHKBP1-221ENST00000599833 ATP8A2Q9NTI2 1148 aa23.49■■□□□ 1.35
SHKBP1-221ENST00000599833 FRMD4AQ9P2Q2 1039 aaPredicted RBP23.49■■□□□ 1.35
SHKBP1-221ENST00000599833 ERO1BQ86YB8 467 aa23.48■■□□□ 1.35
SHKBP1-221ENST00000599833 SCYL3Q8IZE3 742 aa23.48■■□□□ 1.35
SHKBP1-221ENST00000599833 CTNND1O60716 968 aaKnown RBP23.47■■□□□ 1.35
SHKBP1-221ENST00000599833 TTC22Q5TAA0 569 aa23.47■■□□□ 1.35
SHKBP1-221ENST00000599833 TATDN1Q6P1N9 297 aa23.47■■□□□ 1.35
SHKBP1-221ENST00000599833 FAM227BQ96M60 508 aa23.47■■□□□ 1.35
SHKBP1-221ENST00000599833 PTPN18Q99952 460 aa23.47■■□□□ 1.35
SHKBP1-221ENST00000599833 SLC4A4Q9Y6R1 1079 aa23.47■■□□□ 1.35
SHKBP1-221ENST00000599833 A0A0D9SFI3 127 aa23.46■■□□□ 1.35
SHKBP1-221ENST00000599833 IRF6O14896 467 aa23.46■■□□□ 1.35
SHKBP1-221ENST00000599833 PTPRAP18433 802 aa23.46■■□□□ 1.35
SHKBP1-221ENST00000599833 PPATQ06203 517 aa23.46■■□□□ 1.35
SHKBP1-221ENST00000599833 PPIL2Q13356 520 aa23.46■■□□□ 1.35
SHKBP1-221ENST00000599833 MOGSQ13724 837 aa23.46■■□□□ 1.35
SHKBP1-221ENST00000599833 OTUD5Q96G74 571 aa23.46■■□□□ 1.35
SHKBP1-221ENST00000599833 MCM9Q9NXL9 1143 aa23.46■■□□□ 1.35
SHKBP1-221ENST00000599833 ZBTB4Q9P1Z0 1013 aaPredicted RBP23.46■■□□□ 1.35
SHKBP1-221ENST00000599833 CYP2D7A0A087X1C5 515 aa23.45■■□□□ 1.34
SHKBP1-221ENST00000599833 IGF2BP3O00425 579 aaKnown RBP eCLIP23.45■■□□□ 1.34
SHKBP1-221ENST00000599833 SHMT1P34896 483 aa23.45■■□□□ 1.34
SHKBP1-221ENST00000599833 CAP2P40123 477 aa23.45■■□□□ 1.34
SHKBP1-221ENST00000599833 LRRFIP1Q32MZ4 808 aaKnown RBP23.45■■□□□ 1.34
SHKBP1-221ENST00000599833 CCDC129Q6ZRS4 1044 aa23.45■■□□□ 1.34
SHKBP1-221ENST00000599833 REM2Q8IYK8 340 aaPredicted RBP23.45■■□□□ 1.34
SHKBP1-221ENST00000599833 SERPINB13Q9UIV8 391 aa23.45■■□□□ 1.34
SHKBP1-221ENST00000599833 KCNH4Q9UQ05 1017 aa23.45■■□□□ 1.34
SHKBP1-221ENST00000599833 MYH8P13535 1937 aa23.44■■□□□ 1.34
SHKBP1-221ENST00000599833 MANSC4A6NHS7 340 aaPredicted RBP23.44■■□□□ 1.34
SHKBP1-221ENST00000599833 TRIM6-TRIM34B2RNG4 842 aa23.44■■□□□ 1.34
SHKBP1-221ENST00000599833 HLA-DOAP06340 250 aa23.44■■□□□ 1.34
SHKBP1-221ENST00000599833 C12orf60Q5U649 245 aa23.44■■□□□ 1.34
SHKBP1-221ENST00000599833 CTR9Q6PD62 1173 aa23.44■■□□□ 1.34
SHKBP1-221ENST00000599833 CCDC84Q86UT8 332 aaPredicted RBP23.44■■□□□ 1.34
SHKBP1-221ENST00000599833 BRI3BPQ8WY22 251 aa23.44■■□□□ 1.34
SHKBP1-221ENST00000599833 RNF186Q9NXI6 227 aa23.44■■□□□ 1.34
SHKBP1-221ENST00000599833 HSPA8P11142 646 aaKnown RBP23.43■■□□□ 1.34
SHKBP1-221ENST00000599833 SDSP20132 328 aa23.43■■□□□ 1.34
SHKBP1-221ENST00000599833 GIMAP6Q6P9H5 292 aa23.43■■□□□ 1.34
SHKBP1-221ENST00000599833 TTC6Q86TZ1 520 aa23.43■■□□□ 1.34
SHKBP1-221ENST00000599833 RILPL2Q969X0 211 aa23.43■■□□□ 1.34
SHKBP1-221ENST00000599833 AFG3L2Q9Y4W6 797 aa23.43■■□□□ 1.34
SHKBP1-221ENST00000599833 GREB1LQ9C091 1923 aaPredicted RBP23.42■■□□□ 1.34
SHKBP1-221ENST00000599833 USP17L12C9JPN9 530 aa23.42■■□□□ 1.34
SHKBP1-221ENST00000599833 USP17L21D6R901 530 aa23.42■■□□□ 1.34
SHKBP1-221ENST00000599833 NMIQ13287 307 aaPredicted RBP23.42■■□□□ 1.34
SHKBP1-221ENST00000599833 SBK1Q52WX2 424 aa23.42■■□□□ 1.34
SHKBP1-221ENST00000599833 VPS53Q5VIR6 699 aa23.42■■□□□ 1.34
SHKBP1-221ENST00000599833 ZNF589Q86UQ0 364 aaPredicted RBP23.42■■□□□ 1.34
SHKBP1-221ENST00000599833 SLC44A5Q8NCS7 719 aa23.42■■□□□ 1.34
SHKBP1-221ENST00000599833 HELLSQ9NRZ9 838 aa23.42■■□□□ 1.34
SHKBP1-221ENST00000599833 LOC285556D6RIA3 1793 aa23.42■■□□□ 1.34
SHKBP1-221ENST00000599833 PATL2C9JE40 543 aaKnown RBP23.41■■□□□ 1.34
SHKBP1-221ENST00000599833 POLR3DP05423 398 aaPredicted RBP23.41■■□□□ 1.34
SHKBP1-221ENST00000599833 IFNL1Q8IU54 200 aa23.41■■□□□ 1.34
SHKBP1-221ENST00000599833 DYNLL2Q96FJ2 89 aa23.41■■□□□ 1.34
SHKBP1-221ENST00000599833 IL25Q9H293 177 aa23.41■■□□□ 1.34
SHKBP1-221ENST00000599833 SAGE1Q9NXZ1 904 aa23.41■■□□□ 1.34
SHKBP1-221ENST00000599833 ROBO3Q96MS0 1386 aa23.4■■□□□ 1.34
SHKBP1-221ENST00000599833 HTTP42858 3142 aa23.4■■□□□ 1.34
SHKBP1-221ENST00000599833 GDF11O95390 407 aa23.4■■□□□ 1.34
SHKBP1-221ENST00000599833 GNAT2P19087 354 aa23.4■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms