RNA–Protein interactions for RNA: ENST00000599322.5

LIG1-218, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-218ENST00000599322 RFX7Q2KHR2 1363 aa17.12■□□□□ 0.33
LIG1-218ENST00000599322 RBBP6Q7Z6E9 1792 aaKnown RBP17.12■□□□□ 0.33
LIG1-218ENST00000599322 COL2A1P02458 1487 aaPredicted RBP17.12■□□□□ 0.33
LIG1-218ENST00000599322 SMARCA5O60264 1052 aaPredicted RBP17.11■□□□□ 0.33
LIG1-218ENST00000599322 LRRFIP1Q32MZ4 808 aaKnown RBP17.11■□□□□ 0.33
LIG1-218ENST00000599322 FASTKD5Q7L8L6 764 aaKnown RBP17.11■□□□□ 0.33
LIG1-218ENST00000599322 TTC6Q86TZ1 520 aa17.11■□□□□ 0.33
LIG1-218ENST00000599322 BRI3BPQ8WY22 251 aa17.11■□□□□ 0.33
LIG1-218ENST00000599322 ERO1AQ96HE7 468 aa17.11■□□□□ 0.33
LIG1-218ENST00000599322 DDRGK1Q96HY6 314 aa17.11■□□□□ 0.33
LIG1-218ENST00000599322 HAUS7Q99871 368 aa17.11■□□□□ 0.33
LIG1-218ENST00000599322 TBC1D2Q9BYX2 928 aa17.11■□□□□ 0.33
LIG1-218ENST00000599322 CRNKL1Q9BZJ0 848 aaKnown RBP17.11■□□□□ 0.33
LIG1-218ENST00000599322 ZHX2Q9Y6X8 837 aa17.11■□□□□ 0.33
LIG1-218ENST00000599322 MAST2Q6P0Q8 1798 aa17.1■□□□□ 0.33
LIG1-218ENST00000599322 PHF20L1A8MW92 1017 aa17.1■□□□□ 0.33
LIG1-218ENST00000599322 DYNLL1P63167 89 aaKnown RBP17.1■□□□□ 0.33
LIG1-218ENST00000599322 CRHR2Q13324 411 aa17.1■□□□□ 0.33
LIG1-218ENST00000599322 FBXO46Q6PJ61 603 aaPredicted RBP17.1■□□□□ 0.33
LIG1-218ENST00000599322 FLT1P17948 1338 aa17.1■□□□□ 0.33
LIG1-218ENST00000599322 CENPFP49454 3210 aa17.09■□□□□ 0.33
LIG1-218ENST00000599322 ERC2O15083 957 aa17.09■□□□□ 0.33
LIG1-218ENST00000599322 PDE6AP16499 860 aa17.09■□□□□ 0.33
LIG1-218ENST00000599322 KIF22Q14807 665 aa17.09■□□□□ 0.33
LIG1-218ENST00000599322 ADGRA1Q86SQ6 560 aa17.09■□□□□ 0.33
LIG1-218ENST00000599322 AMOTL1Q8IY63 956 aa17.09■□□□□ 0.33
LIG1-218ENST00000599322 PTPN18Q99952 460 aa17.09■□□□□ 0.33
LIG1-218ENST00000599322 AS3MTQ9HBK9 375 aa17.09■□□□□ 0.33
LIG1-218ENST00000599322 KCNH4Q9UQ05 1017 aa17.09■□□□□ 0.33
LIG1-218ENST00000599322 PCDHB15Q9Y5E8 787 aa17.09■□□□□ 0.33
LIG1-218ENST00000599322 ZNF532Q9HCE3 1301 aa17.08■□□□□ 0.32
LIG1-218ENST00000599322 POLR3DP05423 398 aaPredicted RBP17.08■□□□□ 0.32
LIG1-218ENST00000599322 PTPRAP18433 802 aa17.08■□□□□ 0.32
LIG1-218ENST00000599322 SP3Q02447 781 aa17.08■□□□□ 0.32
LIG1-218ENST00000599322 ANKRD23Q86SG2 305 aa17.08■□□□□ 0.32
LIG1-218ENST00000599322 GCC1Q96CN9 775 aa17.08■□□□□ 0.32
LIG1-218ENST00000599322 GINM1Q9NU53 330 aa17.08■□□□□ 0.32
LIG1-218ENST00000599322 SAP30BPQ9UHR5 308 aaKnown RBP17.08■□□□□ 0.32
LIG1-218ENST00000599322 PALD1Q9ULE6 856 aa17.08■□□□□ 0.32
LIG1-218ENST00000599322 DOCK2Q92608 1830 aa17.07■□□□□ 0.32
LIG1-218ENST00000599322 ASNSP08243 561 aa17.07■□□□□ 0.32
LIG1-218ENST00000599322 FAM43AQ8N2R8 423 aa17.07■□□□□ 0.32
LIG1-218ENST00000599322 RWDD1Q9H446 243 aaPredicted RBP17.07■□□□□ 0.32
LIG1-218ENST00000599322 ZSWIM8A7E2V4 1837 aa17.06■□□□□ 0.32
LIG1-218ENST00000599322 FAM196BA6NMK8 535 aa17.06■□□□□ 0.32
LIG1-218ENST00000599322 USP17L5A8MUK1 530 aa17.06■□□□□ 0.32
LIG1-218ENST00000599322 BTBD19C9JJ37 291 aa17.06■□□□□ 0.32
LIG1-218ENST00000599322 CAP2P40123 477 aa17.06■□□□□ 0.32
LIG1-218ENST00000599322 ANKRD45Q5TZF3 282 aa17.06■□□□□ 0.32
LIG1-218ENST00000599322 GADL1Q6ZQY3 521 aa17.06■□□□□ 0.32
LIG1-218ENST00000599322 PARK7Q99497 189 aaKnown RBP17.06■□□□□ 0.32
LIG1-218ENST00000599322 TTC41PQ6P2S7 1318 aa17.05■□□□□ 0.32
LIG1-218ENST00000599322 TRIM75PA6NK02 468 aa17.05■□□□□ 0.32
LIG1-218ENST00000599322 PDHXO00330 501 aa17.05■□□□□ 0.32
LIG1-218ENST00000599322 ADD2P35612 726 aa17.05■□□□□ 0.32
LIG1-218ENST00000599322 PABPC4Q13310 644 aaKnown RBP eCLIP17.05■□□□□ 0.322e-6■■■■□ 26.1
LIG1-218ENST00000599322 SERPINB13Q9UIV8 391 aa17.05■□□□□ 0.32
LIG1-218ENST00000599322 AFG3L2Q9Y4W6 797 aa17.05■□□□□ 0.32
LIG1-218ENST00000599322 TRIM17Q9Y577 477 aa17.05■□□□□ 0.32
LIG1-218ENST00000599322 TLR2O60603 784 aa17.04■□□□□ 0.32
LIG1-218ENST00000599322 GLRX3O76003 335 aaKnown RBP17.04■□□□□ 0.32
LIG1-218ENST00000599322 CAP1Q01518 475 aa17.04■□□□□ 0.32
LIG1-218ENST00000599322 HDAC1Q13547 482 aaPredicted RBP17.04■□□□□ 0.32
LIG1-218ENST00000599322 UBE3CQ15386 1083 aa17.04■□□□□ 0.32
LIG1-218ENST00000599322 OTOP1Q7RTM1 612 aa17.04■□□□□ 0.32
LIG1-218ENST00000599322 ZNF280CQ8ND82 737 aa17.04■□□□□ 0.32
LIG1-218ENST00000599322 EDC3Q96F86 508 aaKnown RBP17.04■□□□□ 0.32
LIG1-218ENST00000599322 RIOK1Q9BRS2 568 aaKnown RBP17.04■□□□□ 0.32
LIG1-218ENST00000599322 EFCC1Q9HA90 598 aa17.04■□□□□ 0.32
LIG1-218ENST00000599322 CABP5Q9NP86 173 aa17.04■□□□□ 0.32
LIG1-218ENST00000599322 MCM9Q9NXL9 1143 aa17.04■□□□□ 0.32
LIG1-218ENST00000599322 PNMA3Q9UL41 463 aa17.04■□□□□ 0.32
LIG1-218ENST00000599322 A0A0G2JLL6 359 aaPredicted RBP17.03■□□□□ 0.32
LIG1-218ENST00000599322 ZFYP08048 801 aaPredicted RBP17.03■□□□□ 0.32
LIG1-218ENST00000599322 SPP2Q13103 211 aa17.03■□□□□ 0.32
LIG1-218ENST00000599322 SLC4A8Q2Y0W8 1093 aa17.03■□□□□ 0.32
LIG1-218ENST00000599322 PRRT2Q7Z6L0 340 aaPredicted RBP17.03■□□□□ 0.32
LIG1-218ENST00000599322 EHD4Q9H223 541 aa17.03■□□□□ 0.32
LIG1-218ENST00000599322 ATP8A2Q9NTI2 1148 aa17.03■□□□□ 0.32
LIG1-218ENST00000599322 TMOD4Q9NZQ9 345 aa17.03■□□□□ 0.32
LIG1-218ENST00000599322 MKI67P46013 3256 aaKnown RBP17.03■□□□□ 0.32
LIG1-218ENST00000599322 MBD4O95243 580 aa17.02■□□□□ 0.32
LIG1-218ENST00000599322 METTL16Q86W50 562 aaKnown RBP17.02■□□□□ 0.32
LIG1-218ENST00000599322 KBTBD3Q8NAB2 608 aa17.02■□□□□ 0.32
LIG1-218ENST00000599322 CD99L2Q8TCZ2 262 aa17.02■□□□□ 0.32
LIG1-218ENST00000599322 SMCR8Q8TEV9 937 aaPredicted RBP17.02■□□□□ 0.32
LIG1-218ENST00000599322 ARMT1Q9H993 441 aa17.02■□□□□ 0.32
LIG1-218ENST00000599322 TAOK2Q9UL54 1235 aa17.02■□□□□ 0.32
LIG1-218ENST00000599322 SLC45A1Q9Y2W3 748 aa17.02■□□□□ 0.32
LIG1-218ENST00000599322 SUPT16HQ9Y5B9 1047 aaKnown RBP17.02■□□□□ 0.32
LIG1-218ENST00000599322 BRCA2P51587 3418 aa17.02■□□□□ 0.31
LIG1-218ENST00000599322 KIAA0100Q14667 2235 aaKnown RBP17.01■□□□□ 0.31
LIG1-218ENST00000599322 TCRBV5S4A2TA0A5A2 114 aa17.01■□□□□ 0.31
LIG1-218ENST00000599322 SLURP2P0DP57 97 aa17.01■□□□□ 0.31
LIG1-218ENST00000599322 MX1P20591 662 aa17.01■□□□□ 0.31
LIG1-218ENST00000599322 HOXD10P28358 340 aa17.01■□□□□ 0.31
LIG1-218ENST00000599322 CERKLQ49MI3 558 aaPredicted RBP17.01■□□□□ 0.31
LIG1-218ENST00000599322 PRPF38BQ5VTL8 546 aaKnown RBP17.01■□□□□ 0.31
LIG1-218ENST00000599322 PROCA1Q8NCQ7 364 aaPredicted RBP17.01■□□□□ 0.31
LIG1-218ENST00000599322 C19orf81C9J6K1 198 aa17■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms