RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 PFASO15067 1338 aa12.62□□□□□ -0.39
TRIM28-210ENST00000597618 PHIPQ8WWQ0 1821 aa12.61□□□□□ -0.39
TRIM28-210ENST00000597618 CIAO1O76071 339 aa12.61□□□□□ -0.39
TRIM28-210ENST00000597618 SLURP2P0DP57 97 aa12.61□□□□□ -0.39
TRIM28-210ENST00000597618 BTDP43251 543 aa12.61□□□□□ -0.39
TRIM28-210ENST00000597618 PHKA1P46020 1223 aa12.61□□□□□ -0.39
TRIM28-210ENST00000597618 HMGCS2P54868 508 aa12.61□□□□□ -0.39
TRIM28-210ENST00000597618 SPP2Q13103 211 aa12.61□□□□□ -0.39
TRIM28-210ENST00000597618 ZNF280CQ8ND82 737 aa12.61□□□□□ -0.39
TRIM28-210ENST00000597618 SOCS4Q8WXH5 440 aa12.61□□□□□ -0.39
TRIM28-210ENST00000597618 FAM163AQ96GL9 167 aaPredicted RBP12.61□□□□□ -0.39
TRIM28-210ENST00000597618 OSBPL5Q9H0X9 879 aaPredicted RBP12.61□□□□□ -0.39
TRIM28-210ENST00000597618 ASCC2Q9H1I8 757 aaPredicted RBP12.61□□□□□ -0.39
TRIM28-210ENST00000597618 CEP126Q9P2H0 1117 aa12.61□□□□□ -0.39
TRIM28-210ENST00000597618 MORF4L1Q9UBU8 362 aa12.61□□□□□ -0.39
TRIM28-210ENST00000597618 PDS5AQ29RF7 1337 aaKnown RBP12.61□□□□□ -0.39
TRIM28-210ENST00000597618 NPM3O75607 178 aaKnown RBP12.6□□□□□ -0.39
TRIM28-210ENST00000597618 COL6A1P12109 1028 aa12.6□□□□□ -0.39
TRIM28-210ENST00000597618 XRCC5P13010 732 aaKnown RBP12.6□□□□□ -0.39
TRIM28-210ENST00000597618 SPTY2D1Q68D10 685 aaPredicted RBP12.6□□□□□ -0.39
TRIM28-210ENST00000597618 FAM109BQ6ICB4 259 aaPredicted RBP12.6□□□□□ -0.39
TRIM28-210ENST00000597618 TRMT44Q8IYL2 757 aaKnown RBP12.6□□□□□ -0.39
TRIM28-210ENST00000597618 SIL1Q9H173 461 aa12.6□□□□□ -0.39
TRIM28-210ENST00000597618 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.6□□□□□ -0.39
TRIM28-210ENST00000597618 MRS2Q9HD23 443 aa12.6□□□□□ -0.39
TRIM28-210ENST00000597618 LOC285556D6RIA3 1793 aa12.6□□□□□ -0.39
TRIM28-210ENST00000597618 DOCK3Q8IZD9 2030 aa12.6□□□□□ -0.39
TRIM28-210ENST00000597618 DNAH12Q6ZR08 3092 aa12.6□□□□□ -0.39
TRIM28-210ENST00000597618 MROH7-TTC4A0A0A0MT08 1334 aa12.6□□□□□ -0.39
TRIM28-210ENST00000597618 COL2A1P02458 1487 aaPredicted RBP12.59□□□□□ -0.39
TRIM28-210ENST00000597618 ZKSCAN1P17029 563 aaPredicted RBP12.59□□□□□ -0.39
TRIM28-210ENST00000597618 CYP2B6P20813 491 aa12.59□□□□□ -0.39
TRIM28-210ENST00000597618 IRX3P78415 501 aaPredicted RBP12.59□□□□□ -0.39
TRIM28-210ENST00000597618 PDE3AQ14432 1141 aa12.59□□□□□ -0.39
TRIM28-210ENST00000597618 CCDC102BQ68D86 513 aa12.59□□□□□ -0.39
TRIM28-210ENST00000597618 MRPL50Q8N5N7 158 aaKnown RBP12.59□□□□□ -0.39
TRIM28-210ENST00000597618 NUDT12Q9BQG2 462 aa12.59□□□□□ -0.39
TRIM28-210ENST00000597618 AS3MTQ9HBK9 375 aa12.59□□□□□ -0.39
TRIM28-210ENST00000597618 ABCF2Q9UG63 623 aa12.59□□□□□ -0.39
TRIM28-210ENST00000597618 GPR75-ASB3A0A0A6YYF3 556 aa12.58□□□□□ -0.4
TRIM28-210ENST00000597618 FAM196BA6NMK8 535 aa12.58□□□□□ -0.4
TRIM28-210ENST00000597618 USP17L5A8MUK1 530 aa12.58□□□□□ -0.4
TRIM28-210ENST00000597618 MAP4K4O95819 1239 aaPredicted RBP12.58□□□□□ -0.4
TRIM28-210ENST00000597618 CAP2P40123 477 aa12.58□□□□□ -0.4
TRIM28-210ENST00000597618 IL15P40933 162 aaPredicted RBP12.58□□□□□ -0.4
TRIM28-210ENST00000597618 RHBDL3P58872 404 aa12.58□□□□□ -0.4
TRIM28-210ENST00000597618 MDM2Q00987 491 aaPredicted RBP12.58□□□□□ -0.4
TRIM28-210ENST00000597618 RASGRF1Q13972 1273 aa12.58□□□□□ -0.4
TRIM28-210ENST00000597618 SH3D19Q5HYK7 790 aa12.58□□□□□ -0.4
TRIM28-210ENST00000597618 PRUNE2Q8WUY3 3088 aa12.58□□□□□ -0.4
TRIM28-210ENST00000597618 TTC28Q96AY4 2481 aa12.58□□□□□ -0.4
TRIM28-210ENST00000597618 GUCD1Q96NT3 240 aa12.58□□□□□ -0.4
TRIM28-210ENST00000597618 MYH2Q9UKX2 1941 aa12.58□□□□□ -0.4
TRIM28-210ENST00000597618 CDH23Q9H251 3354 aa12.58□□□□□ -0.4
TRIM28-210ENST00000597618 POTEB2H3BUK9 544 aa12.57□□□□□ -0.4
TRIM28-210ENST00000597618 MAPK4P31152 587 aa12.57□□□□□ -0.4
TRIM28-210ENST00000597618 LRRC26Q2I0M4 334 aa12.57□□□□□ -0.4
TRIM28-210ENST00000597618 GPRC5AQ8NFJ5 357 aa12.57□□□□□ -0.4
TRIM28-210ENST00000597618 TMOD4Q9NZQ9 345 aa12.57□□□□□ -0.4
TRIM28-210ENST00000597618 UBTFL1P0CB47 393 aaPredicted RBP12.56□□□□□ -0.4
TRIM28-210ENST00000597618 ADORA1P30542 326 aa12.56□□□□□ -0.4
TRIM28-210ENST00000597618 HOXA7P31268 230 aaPredicted RBP12.56□□□□□ -0.4
TRIM28-210ENST00000597618 RGS2P41220 211 aa12.56□□□□□ -0.4
TRIM28-210ENST00000597618 MECOMQ03112 1051 aa12.56□□□□□ -0.4
TRIM28-210ENST00000597618 CACNB2Q08289 660 aaPredicted RBP12.56□□□□□ -0.4
TRIM28-210ENST00000597618 MTMR2Q13614 643 aa12.56□□□□□ -0.4
TRIM28-210ENST00000597618 ZNF697Q5TEC3 545 aa12.56□□□□□ -0.4
TRIM28-210ENST00000597618 ERICH6Q7L0X2 663 aa12.56□□□□□ -0.4
TRIM28-210ENST00000597618 CCAR1Q8IX12 1150 aaKnown RBP12.56□□□□□ -0.4
TRIM28-210ENST00000597618 LBHD1Q9BQE6 289 aaPredicted RBP12.56□□□□□ -0.4
TRIM28-210ENST00000597618 WDR18Q9BV38 432 aa12.56□□□□□ -0.4
TRIM28-210ENST00000597618 HERC5Q9UII4 1024 aaKnown RBP12.56□□□□□ -0.4
TRIM28-210ENST00000597618 MUC3AQ02505 3323 aa12.55□□□□□ -0.4
TRIM28-210ENST00000597618 BACE1P56817 501 aa12.55□□□□□ -0.4
TRIM28-210ENST00000597618 HERVK_113P62684 666 aa12.55□□□□□ -0.4
TRIM28-210ENST00000597618 GSTO1P78417 241 aa12.55□□□□□ -0.4
TRIM28-210ENST00000597618 LHX8Q68G74 356 aa12.55□□□□□ -0.4
TRIM28-210ENST00000597618 GTF3C2Q8WUA4 911 aaPredicted RBP12.55□□□□□ -0.4
TRIM28-210ENST00000597618 APBA2Q99767 749 aa12.55□□□□□ -0.4
TRIM28-210ENST00000597618 PLXNB2O15031 1838 aa12.55□□□□□ -0.4
TRIM28-210ENST00000597618 LDHCP07864 332 aa12.54□□□□□ -0.4
TRIM28-210ENST00000597618 ASNSP08243 561 aa12.54□□□□□ -0.4
TRIM28-210ENST00000597618 CCND3P30281 292 aaPredicted RBP12.54□□□□□ -0.4
TRIM28-210ENST00000597618 RRP1BQ14684 758 aaKnown RBP12.54□□□□□ -0.4
TRIM28-210ENST00000597618 MVPQ14764 893 aaKnown RBP12.54□□□□□ -0.4
TRIM28-210ENST00000597618 USP6NLQ92738 828 aa12.54□□□□□ -0.4
TRIM28-210ENST00000597618 FAM161BQ96MY7 647 aa12.54□□□□□ -0.4
TRIM28-210ENST00000597618 P2RX7Q99572 595 aaKnown RBP12.54□□□□□ -0.4
TRIM28-210ENST00000597618 TXNRD2Q9NNW7 524 aa12.54□□□□□ -0.4
TRIM28-210ENST00000597618 HDAC5Q9UQL6 1122 aa12.54□□□□□ -0.4
TRIM28-210ENST00000597618 C19orf81C9J6K1 198 aa12.53□□□□□ -0.4
TRIM28-210ENST00000597618 ERVK-9P63128 1117 aa12.53□□□□□ -0.4
TRIM28-210ENST00000597618 ERVK-24P63145 666 aa12.53□□□□□ -0.4
TRIM28-210ENST00000597618 MORN1Q5T089 497 aa12.53□□□□□ -0.4
TRIM28-210ENST00000597618 GPR142Q7Z601 462 aa12.53□□□□□ -0.4
TRIM28-210ENST00000597618 PLEKHH3Q7Z736 793 aa12.53□□□□□ -0.4
TRIM28-210ENST00000597618 TEX11Q8IYF3 940 aa12.53□□□□□ -0.4
TRIM28-210ENST00000597618 ZNF384Q8TF68 577 aa12.53□□□□□ -0.4
TRIM28-210ENST00000597618 SSH1Q8WYL5 1049 aa12.53□□□□□ -0.4
TRIM28-210ENST00000597618 NSUN4Q96CB9 384 aaKnown RBP12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 60.2 ms