RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 NECAB2Q7Z6G3 386 aa11.42□□□□□ -0.58
TRIM28-208ENST00000597172 FAM43AQ8N2R8 423 aa11.42□□□□□ -0.58
TRIM28-208ENST00000597172 PIH1D3Q9NQM4 214 aaKnown RBP11.42□□□□□ -0.58
TRIM28-208ENST00000597172 DENND2AQ9ULE3 1009 aa11.42□□□□□ -0.58
TRIM28-208ENST00000597172 ARIH1Q9Y4X5 557 aaPredicted RBP11.42□□□□□ -0.58
TRIM28-208ENST00000597172 COL1A1P02452 1464 aaPredicted RBP11.42□□□□□ -0.58
TRIM28-208ENST00000597172 PDS5AQ29RF7 1337 aaKnown RBP11.41□□□□□ -0.58
TRIM28-208ENST00000597172 CHGBP05060 677 aa11.41□□□□□ -0.58
TRIM28-208ENST00000597172 PSMC4P43686 418 aa11.41□□□□□ -0.58
TRIM28-208ENST00000597172 SUPT20HL1Q3ZLR7 823 aa11.41□□□□□ -0.58
TRIM28-208ENST00000597172 C8orf34Q49A92 452 aa11.41□□□□□ -0.58
TRIM28-208ENST00000597172 ANKRD13AQ8IZ07 590 aa11.41□□□□□ -0.58
TRIM28-208ENST00000597172 KBTBD3Q8NAB2 608 aa11.41□□□□□ -0.58
TRIM28-208ENST00000597172 OPTNQ96CV9 577 aa11.41□□□□□ -0.58
TRIM28-208ENST00000597172 JAG2Q9Y219 1238 aa11.41□□□□□ -0.58
TRIM28-208ENST00000597172 PSME4Q14997 1843 aa11.4□□□□□ -0.58
TRIM28-208ENST00000597172 FRAT2O75474 233 aaPredicted RBP11.4□□□□□ -0.58
TRIM28-208ENST00000597172 USP2O75604 605 aaPredicted RBP11.4□□□□□ -0.58
TRIM28-208ENST00000597172 OSBPP22059 807 aa11.4□□□□□ -0.58
TRIM28-208ENST00000597172 CHMLP26374 656 aa11.4□□□□□ -0.58
TRIM28-208ENST00000597172 GTF2A2P52657 109 aa11.4□□□□□ -0.58
TRIM28-208ENST00000597172 CHAF1AQ13111 956 aaPredicted RBP11.4□□□□□ -0.58
TRIM28-208ENST00000597172 SLFNL1Q499Z3 407 aa11.4□□□□□ -0.58
TRIM28-208ENST00000597172 PODNQ7Z5L7 613 aa11.4□□□□□ -0.58
TRIM28-208ENST00000597172 CNKSR2Q8WXI2 1034 aa11.4□□□□□ -0.58
TRIM28-208ENST00000597172 DEFB118Q96PH6 123 aa11.4□□□□□ -0.58
TRIM28-208ENST00000597172 MXD3Q9BW11 206 aa11.4□□□□□ -0.58
TRIM28-208ENST00000597172 ELP3Q9H9T3 547 aa11.4□□□□□ -0.58
TRIM28-208ENST00000597172 FAM205AQ6ZU69 1335 aa11.39□□□□□ -0.59
TRIM28-208ENST00000597172 MYPNQ86TC9 1320 aa11.39□□□□□ -0.59
TRIM28-208ENST00000597172 FMNL1O95466 1100 aaPredicted RBP11.39□□□□□ -0.59
TRIM28-208ENST00000597172 CTGFP29279 349 aa11.39□□□□□ -0.59
TRIM28-208ENST00000597172 MMP14P50281 582 aa11.39□□□□□ -0.59
TRIM28-208ENST00000597172 GTF2IP78347 998 aa11.39□□□□□ -0.59
TRIM28-208ENST00000597172 MYO9BQ13459 2157 aa11.39□□□□□ -0.59
TRIM28-208ENST00000597172 TTF1Q15361 905 aaPredicted RBP11.39□□□□□ -0.59
TRIM28-208ENST00000597172 GRIK5Q16478 980 aa11.39□□□□□ -0.59
TRIM28-208ENST00000597172 FSD1Q9BTV5 496 aa11.39□□□□□ -0.59
TRIM28-208ENST00000597172 SSC5DA1L4H1 1573 aa11.38□□□□□ -0.59
TRIM28-208ENST00000597172 CDC45O75419 566 aa11.38□□□□□ -0.59
TRIM28-208ENST00000597172 SEC24BO95487 1268 aa11.38□□□□□ -0.59
TRIM28-208ENST00000597172 DACT2Q5SW24 774 aa11.38□□□□□ -0.59
TRIM28-208ENST00000597172 TTLL5Q6EMB2 1281 aa11.38□□□□□ -0.59
TRIM28-208ENST00000597172 TICAM2Q86XR7 235 aa11.38□□□□□ -0.59
TRIM28-208ENST00000597172 SLAIN1Q8ND83 568 aa11.38□□□□□ -0.59
TRIM28-208ENST00000597172 WDR66Q8TBY9 1149 aa11.38□□□□□ -0.59
TRIM28-208ENST00000597172 DIS3LQ8TF46 1054 aaKnown RBP11.38□□□□□ -0.59
TRIM28-208ENST00000597172 ZNF384Q8TF68 577 aa11.38□□□□□ -0.59
TRIM28-208ENST00000597172 BACH2Q9BYV9 841 aa11.38□□□□□ -0.59
TRIM28-208ENST00000597172 IL25Q9H293 177 aa11.38□□□□□ -0.59
TRIM28-208ENST00000597172 SEMA6BQ9H3T3 888 aa11.38□□□□□ -0.59
TRIM28-208ENST00000597172 PPP2R3BQ9Y5P8 575 aa11.38□□□□□ -0.59
TRIM28-208ENST00000597172 SALL1Q9NSC2 1324 aa11.37□□□□□ -0.59
TRIM28-208ENST00000597172 RNF113AO15541 343 aaKnown RBP11.37□□□□□ -0.59
TRIM28-208ENST00000597172 IDH1O75874 414 aaKnown RBP11.37□□□□□ -0.59
TRIM28-208ENST00000597172 NBPF12Q5TAG4 269 aaPredicted RBP11.37□□□□□ -0.59
TRIM28-208ENST00000597172 C17orf99Q6UX52 265 aa11.37□□□□□ -0.59
TRIM28-208ENST00000597172 CERS5Q8N5B7 392 aa11.37□□□□□ -0.59
TRIM28-208ENST00000597172 MYLIPQ8WY64 445 aa11.37□□□□□ -0.59
TRIM28-208ENST00000597172 ZBED3Q96IU2 234 aaPredicted RBP11.37□□□□□ -0.59
TRIM28-208ENST00000597172 FAM227BQ96M60 508 aa11.37□□□□□ -0.59
TRIM28-208ENST00000597172 SEC62Q99442 399 aaKnown RBP11.37□□□□□ -0.59
TRIM28-208ENST00000597172 CRISPLD2Q9H0B8 497 aa11.37□□□□□ -0.59
TRIM28-208ENST00000597172 ABCF2Q9UG63 623 aa11.37□□□□□ -0.59
TRIM28-208ENST00000597172 CDH23Q9H251 3354 aa11.37□□□□□ -0.59
TRIM28-208ENST00000597172 MYO3BQ8WXR4 1341 aa11.36□□□□□ -0.59
TRIM28-208ENST00000597172 TCRBV5S4A2TA0A5A2 114 aa11.36□□□□□ -0.59
TRIM28-208ENST00000597172 PDE6AP16499 860 aa11.36□□□□□ -0.59
TRIM28-208ENST00000597172 PRDX5P30044 214 aa11.36□□□□□ -0.59
TRIM28-208ENST00000597172 ADD2P35612 726 aa11.36□□□□□ -0.59
TRIM28-208ENST00000597172 NMIQ13287 307 aaPredicted RBP11.36□□□□□ -0.59
TRIM28-208ENST00000597172 ZMYM1Q5SVZ6 1142 aa11.36□□□□□ -0.59
TRIM28-208ENST00000597172 SLC9C2Q5TAH2 1124 aa11.36□□□□□ -0.59
TRIM28-208ENST00000597172 STRIP1Q5VSL9 837 aa11.36□□□□□ -0.59
TRIM28-208ENST00000597172 CWC27Q6UX04 472 aaKnown RBP11.36□□□□□ -0.59
TRIM28-208ENST00000597172 ERICH6Q7L0X2 663 aa11.36□□□□□ -0.59
TRIM28-208ENST00000597172 FBXW7Q969H0 707 aa11.36□□□□□ -0.59
TRIM28-208ENST00000597172 C1QTNF1Q9BXJ1 281 aa11.36□□□□□ -0.59
TRIM28-208ENST00000597172 ZCCHC17Q9NP64 241 aaKnown RBP11.36□□□□□ -0.59
TRIM28-208ENST00000597172 LRP2BPQ9P2M1 347 aa11.36□□□□□ -0.59
TRIM28-208ENST00000597172 HCN4Q9Y3Q4 1203 aa11.36□□□□□ -0.59
TRIM28-208ENST00000597172 CACNA1GO43497 2377 aa11.35□□□□□ -0.59
TRIM28-208ENST00000597172 A0A0D9SFI3 127 aa11.35□□□□□ -0.59
TRIM28-208ENST00000597172 BTBD19C9JJ37 291 aa11.35□□□□□ -0.59
TRIM28-208ENST00000597172 HIP1O00291 1037 aa11.35□□□□□ -0.59
TRIM28-208ENST00000597172 FOSL2P15408 326 aa11.35□□□□□ -0.59
TRIM28-208ENST00000597172 FKBP1AP62942 108 aaKnown RBP11.35□□□□□ -0.59
TRIM28-208ENST00000597172 MECOMQ03112 1051 aa11.35□□□□□ -0.59
TRIM28-208ENST00000597172 PRKCZQ05513 592 aa11.35□□□□□ -0.59
TRIM28-208ENST00000597172 MFSD14BQ5SR56 506 aa11.35□□□□□ -0.59
TRIM28-208ENST00000597172 SPTY2D1Q68D10 685 aaPredicted RBP11.35□□□□□ -0.59
TRIM28-208ENST00000597172 ALYREFQ86V81 257 aaKnown RBP11.35□□□□□ -0.59
TRIM28-208ENST00000597172 ZGPATQ8N5A5 531 aaKnown RBP11.35□□□□□ -0.59
TRIM28-208ENST00000597172 MAGEB6Q8N7X4 407 aa11.35□□□□□ -0.59
TRIM28-208ENST00000597172 TBC1D22AQ8WUA7 517 aa11.35□□□□□ -0.59
TRIM28-208ENST00000597172 OSBP2Q969R2 916 aa11.35□□□□□ -0.59
TRIM28-208ENST00000597172 NSUN4Q96CB9 384 aaKnown RBP11.35□□□□□ -0.59
TRIM28-208ENST00000597172 ESYT1Q9BSJ8 1104 aa11.35□□□□□ -0.59
TRIM28-208ENST00000597172 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.35□□□□□ -0.591e-10■■□□□ 13.4
TRIM28-208ENST00000597172 RAI14Q9P0K7 980 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms