RNA–Protein interactions for RNA: ENST00000594067.5

LIG1-206, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 2,697 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-206ENST00000594067 DIS3L2Q8IYB7 885 aaKnown RBP18.94■□□□□ 0.62
LIG1-206ENST00000594067 IFNAR1P17181 557 aa18.94■□□□□ 0.62
LIG1-206ENST00000594067 VSTM4Q8IW00 320 aa18.94■□□□□ 0.62
LIG1-206ENST00000594067 MMP1P03956 469 aa18.93■□□□□ 0.62
LIG1-206ENST00000594067 TDO2P48775 406 aa18.93■□□□□ 0.62
LIG1-206ENST00000594067 ETF1P62495 437 aaKnown RBP18.93■□□□□ 0.62
LIG1-206ENST00000594067 LCORLQ8N3X6 602 aa18.93■□□□□ 0.62
LIG1-206ENST00000594067 TOP1P11387 765 aaKnown RBP18.93■□□□□ 0.62
LIG1-206ENST00000594067 SAFBQ15424 915 aaKnown RBP eCLIP18.93■□□□□ 0.62
LIG1-206ENST00000594067 UTP14AQ9BVJ6 771 aaKnown RBP18.93■□□□□ 0.62
LIG1-206ENST00000594067 KRT23Q9C075 422 aa18.93■□□□□ 0.62
LIG1-206ENST00000594067 CNNM2Q9H8M5 875 aa18.93■□□□□ 0.62
LIG1-206ENST00000594067 SEC31BQ9NQW1 1179 aa18.93■□□□□ 0.62
LIG1-206ENST00000594067 PODXL2Q9NZ53 605 aa18.93■□□□□ 0.62
LIG1-206ENST00000594067 SLC4A4Q9Y6R1 1079 aa18.93■□□□□ 0.62
LIG1-206ENST00000594067 ATP2B1P20020 1258 aa18.92■□□□□ 0.62
LIG1-206ENST00000594067 RTN1Q16799 776 aa18.92■□□□□ 0.62
LIG1-206ENST00000594067 WASF1Q92558 559 aa18.92■□□□□ 0.62
LIG1-206ENST00000594067 DNAI1Q9UI46 699 aa18.92■□□□□ 0.62
LIG1-206ENST00000594067 FAM193AP78312 1265 aa18.92■□□□□ 0.62
LIG1-206ENST00000594067 MDM2Q00987 491 aaPredicted RBP18.92■□□□□ 0.62
LIG1-206ENST00000594067 WTAPQ15007 396 aa18.92■□□□□ 0.62
LIG1-206ENST00000594067 ARHGAP29Q52LW3 1261 aa18.92■□□□□ 0.62
LIG1-206ENST00000594067 MIGA1Q8NAN2 632 aa18.92■□□□□ 0.62
LIG1-206ENST00000594067 BTG4Q9NY30 223 aa18.92■□□□□ 0.62
LIG1-206ENST00000594067 ECM29Q5VYK3 1845 aa18.91■□□□□ 0.62
LIG1-206ENST00000594067 PRR29P0C7W0 189 aa18.91■□□□□ 0.62
LIG1-206ENST00000594067 NR5A1Q13285 461 aa18.91■□□□□ 0.62
LIG1-206ENST00000594067 TRIM65Q6PJ69 517 aa18.91■□□□□ 0.62
LIG1-206ENST00000594067 TRIM22Q8IYM9 498 aa18.91■□□□□ 0.62
LIG1-206ENST00000594067 ZNF34Q8IZ26 560 aa18.91■□□□□ 0.62
LIG1-206ENST00000594067 MPHOSPH8Q99549 860 aa18.91■□□□□ 0.62
LIG1-206ENST00000594067 INTS13Q9NVM9 706 aa18.91■□□□□ 0.62
LIG1-206ENST00000594067 SERTAD1Q9UHV2 236 aa18.91■□□□□ 0.62
LIG1-206ENST00000594067 MAN1B1Q9UKM7 699 aa18.91■□□□□ 0.62
LIG1-206ENST00000594067 POLR2DO15514 142 aaKnown RBP18.91■□□□□ 0.62
LIG1-206ENST00000594067 BCAMP50895 628 aa18.91■□□□□ 0.62
LIG1-206ENST00000594067 ZNF827Q17R98 1081 aa18.91■□□□□ 0.62
LIG1-206ENST00000594067 GRAMD1CQ8IYS0 662 aa18.91■□□□□ 0.62
LIG1-206ENST00000594067 NUP133Q8WUM0 1156 aa18.91■□□□□ 0.62
LIG1-206ENST00000594067 TMX1Q9H3N1 280 aa18.91■□□□□ 0.62
LIG1-206ENST00000594067 FBXO2Q9UK22 296 aaPredicted RBP18.91■□□□□ 0.62
LIG1-206ENST00000594067 PCDHB6Q9Y5E3 794 aa18.91■□□□□ 0.62
LIG1-206ENST00000594067 CCDC66A2RUB6 948 aa18.9■□□□□ 0.62
LIG1-206ENST00000594067 POSTNQ15063 836 aa18.9■□□□□ 0.62
LIG1-206ENST00000594067 PHLPP2Q6ZVD8 1323 aa18.9■□□□□ 0.62
LIG1-206ENST00000594067 LRP6O75581 1613 aa18.9■□□□□ 0.62
LIG1-206ENST00000594067 TNKS1BP1Q9C0C2 1729 aaKnown RBP18.9■□□□□ 0.62
LIG1-206ENST00000594067 ERVV-1B6SEH8 477 aa18.9■□□□□ 0.62
LIG1-206ENST00000594067 FANCGO15287 622 aa18.9■□□□□ 0.62
LIG1-206ENST00000594067 PNMA6AP0CW24 399 aaPredicted RBP18.9■□□□□ 0.62
LIG1-206ENST00000594067 SUSD4Q5VX71 490 aa18.9■□□□□ 0.62
LIG1-206ENST00000594067 PDILTQ8N807 584 aa18.9■□□□□ 0.62
LIG1-206ENST00000594067 STAG1Q8WVM7 1258 aa18.9■□□□□ 0.62
LIG1-206ENST00000594067 XIRP1Q702N8 1843 aaKnown RBP18.89■□□□□ 0.62
LIG1-206ENST00000594067 PTPREP23469 700 aa18.89■□□□□ 0.62
LIG1-206ENST00000594067 FMR1Q06787 632 aaKnown RBP eCLIP18.89■□□□□ 0.627e-8■■□□□ 12.6
LIG1-206ENST00000594067 SART3Q15020 963 aaKnown RBP18.89■□□□□ 0.62
LIG1-206ENST00000594067 OXER1Q8TDS5 423 aa18.89■□□□□ 0.62
LIG1-206ENST00000594067 NACAP1Q9BZK3 213 aa18.89■□□□□ 0.62
LIG1-206ENST00000594067 BCL9O00512 1426 aa18.89■□□□□ 0.61
LIG1-206ENST00000594067 MYH3P11055 1940 aa18.89■□□□□ 0.61
LIG1-206ENST00000594067 KAT6BQ8WYB5 2073 aa18.89■□□□□ 0.61
LIG1-206ENST00000594067 ERICH2A1L162 156 aa18.89■□□□□ 0.61
LIG1-206ENST00000594067 CCP110O43303 1012 aa18.89■□□□□ 0.61
LIG1-206ENST00000594067 ZRANB2O95218 330 aaKnown RBP eCLIP18.89■□□□□ 0.61
LIG1-206ENST00000594067 PLA2G4AP47712 749 aa18.89■□□□□ 0.61
LIG1-206ENST00000594067 REXO1L1PQ8IX06 675 aa18.89■□□□□ 0.61
LIG1-206ENST00000594067 TRMT44Q8IYL2 757 aaKnown RBP18.89■□□□□ 0.61
LIG1-206ENST00000594067 CRACR2BQ8N4Y2 399 aaPredicted RBP18.89■□□□□ 0.61
LIG1-206ENST00000594067 NOL10Q9BSC4 688 aaKnown RBP18.89■□□□□ 0.61
LIG1-206ENST00000594067 IL6STP40189 918 aaPredicted RBP18.88■□□□□ 0.61
LIG1-206ENST00000594067 CREBRFQ8IUR6 639 aa18.88■□□□□ 0.61
LIG1-206ENST00000594067 FOXP1Q9H334 677 aaPredicted RBP18.88■□□□□ 0.61
LIG1-206ENST00000594067 HOOK1Q9UJC3 728 aaKnown RBP18.88■□□□□ 0.61
LIG1-206ENST00000594067 A0A0U1RQG5 324 aaPredicted RBP18.88■□□□□ 0.61
LIG1-206ENST00000594067 DEXIO95424 95 aa18.88■□□□□ 0.61
LIG1-206ENST00000594067 RILPL1Q5EBL4 403 aa18.88■□□□□ 0.61
LIG1-206ENST00000594067 IQSEC3Q9UPP2 1182 aaPredicted RBP18.88■□□□□ 0.61
LIG1-206ENST00000594067 NFE2L3Q9Y4A8 694 aa18.88■□□□□ 0.61
LIG1-206ENST00000594067 CDK11BP21127 795 aaKnown RBP18.87■□□□□ 0.61
LIG1-206ENST00000594067 USP49Q70CQ1 688 aa18.87■□□□□ 0.61
LIG1-206ENST00000594067 FAM177A1Q8N128 213 aaPredicted RBP18.87■□□□□ 0.61
LIG1-206ENST00000594067 UBXN4Q92575 508 aa18.87■□□□□ 0.61
LIG1-206ENST00000594067 SMARCE1Q969G3 411 aa18.87■□□□□ 0.61
LIG1-206ENST00000594067 LRP2BPQ9P2M1 347 aa18.87■□□□□ 0.61
LIG1-206ENST00000594067 SLIT2O94813 1529 aa18.87■□□□□ 0.61
LIG1-206ENST00000594067 ERICH4A6NGS2 130 aa18.87■□□□□ 0.61
LIG1-206ENST00000594067 TMEM139Q8IV31 216 aa18.87■□□□□ 0.61
LIG1-206ENST00000594067 ZNF654Q8IZM8 581 aa18.87■□□□□ 0.61
LIG1-206ENST00000594067 CABP5Q9NP86 173 aa18.87■□□□□ 0.61
LIG1-206ENST00000594067 NID2Q14112 1375 aa18.87■□□□□ 0.61
LIG1-206ENST00000594067 ABCA3Q99758 1704 aa18.87■□□□□ 0.61
LIG1-206ENST00000594067 MYO1BO43795 1136 aa18.87■□□□□ 0.61
LIG1-206ENST00000594067 FANCBQ8NB91 859 aa18.87■□□□□ 0.61
LIG1-206ENST00000594067 ANKRD36CQ5JPF3 1778 aa18.86■□□□□ 0.61
LIG1-206ENST00000594067 ITGB4P16144 1822 aa18.86■□□□□ 0.61
LIG1-206ENST00000594067 MINDY4BA8MYZ0 360 aa18.86■□□□□ 0.61
LIG1-206ENST00000594067 SMIM22K7EJ46 135 aa18.86■□□□□ 0.61
LIG1-206ENST00000594067 GNAT2P19087 354 aa18.86■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 78.1 ms