RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 RGL2O15211 777 aa11.26□□□□□ -0.61
LIG3-216ENST00000593099 KIF20AO95235 890 aa11.26□□□□□ -0.61
LIG3-216ENST00000593099 HSPA4P34932 840 aa11.26□□□□□ -0.61
LIG3-216ENST00000593099 GADL1Q6ZQY3 521 aa11.26□□□□□ -0.61
LIG3-216ENST00000593099 FAM84BQ96KN1 310 aaPredicted RBP11.26□□□□□ -0.61
LIG3-216ENST00000593099 V9GY48 417 aaPredicted RBP11.26□□□□□ -0.61
LIG3-216ENST00000593099 RBM10P98175 930 aaKnown RBP11.26□□□□□ -0.61
LIG3-216ENST00000593099 FOXP4Q8IVH2 680 aaPredicted RBP11.26□□□□□ -0.61
LIG3-216ENST00000593099 NAP1L4Q99733 375 aaKnown RBP11.26□□□□□ -0.61
LIG3-216ENST00000593099 TM6SF1Q9BZW5 370 aa11.26□□□□□ -0.61
LIG3-216ENST00000593099 COL3A1P02461 1466 aaPredicted RBP11.26□□□□□ -0.61
LIG3-216ENST00000593099 NSMFQ6X4W1 530 aa11.26□□□□□ -0.61
LIG3-216ENST00000593099 FCHSD1Q86WN1 690 aa11.26□□□□□ -0.61
LIG3-216ENST00000593099 TICAM2Q86XR7 235 aa11.26□□□□□ -0.61
LIG3-216ENST00000593099 PRDX5P30044 214 aa11.25□□□□□ -0.61
LIG3-216ENST00000593099 TSPY26PQ9H489 355 aa11.25□□□□□ -0.61
LIG3-216ENST00000593099 PNMA2Q9UL42 364 aa11.25□□□□□ -0.61
LIG3-216ENST00000593099 KNDC1Q76NI1 1749 aa11.25□□□□□ -0.61
LIG3-216ENST00000593099 TOP1P11387 765 aaKnown RBP11.25□□□□□ -0.61
LIG3-216ENST00000593099 SLC10A5Q5PT55 438 aa11.25□□□□□ -0.61
LIG3-216ENST00000593099 FSIP1Q8NA03 581 aa11.25□□□□□ -0.61
LIG3-216ENST00000593099 RNF214Q8ND24 703 aa11.25□□□□□ -0.61
LIG3-216ENST00000593099 ZSCAN10Q96SZ4 725 aaPredicted RBP11.25□□□□□ -0.61
LIG3-216ENST00000593099 LRRC27Q9C0I9 530 aa11.25□□□□□ -0.61
LIG3-216ENST00000593099 PALD1Q9ULE6 856 aa11.25□□□□□ -0.61
LIG3-216ENST00000593099 POLR1AO95602 1720 aaPredicted RBP11.25□□□□□ -0.61
LIG3-216ENST00000593099 ZSCAN22P10073 491 aaPredicted RBP11.25□□□□□ -0.61
LIG3-216ENST00000593099 LCORLQ8N3X6 602 aa11.25□□□□□ -0.61
LIG3-216ENST00000593099 KIFC2Q96AC6 838 aa11.25□□□□□ -0.61
LIG3-216ENST00000593099 MAP7D2Q96T17 732 aa11.25□□□□□ -0.61
LIG3-216ENST00000593099 MCM4P33991 863 aa11.24□□□□□ -0.61
LIG3-216ENST00000593099 ABT1Q9ULW3 272 aaKnown RBP11.24□□□□□ -0.61
LIG3-216ENST00000593099 SUGT1Q9Y2Z0 365 aa11.24□□□□□ -0.61
LIG3-216ENST00000593099 IDEP14735 1019 aa11.24□□□□□ -0.61
LIG3-216ENST00000593099 PTH1RQ03431 593 aa11.24□□□□□ -0.61
LIG3-216ENST00000593099 KIF22Q14807 665 aa11.24□□□□□ -0.61
LIG3-216ENST00000593099 ILDR1Q86SU0 546 aaPredicted RBP11.24□□□□□ -0.61
LIG3-216ENST00000593099 CNNM3Q8NE01 707 aa11.24□□□□□ -0.61
LIG3-216ENST00000593099 PAGR1Q9BTK6 254 aa11.24□□□□□ -0.61
LIG3-216ENST00000593099 UBA5Q9GZZ9 404 aa11.24□□□□□ -0.61
LIG3-216ENST00000593099 GSE1Q14687 1217 aa11.24□□□□□ -0.61
LIG3-216ENST00000593099 BRDTQ58F21 947 aaPredicted RBP11.24□□□□□ -0.61
LIG3-216ENST00000593099 SLFN13Q68D06 897 aa11.24□□□□□ -0.61
LIG3-216ENST00000593099 ZNF654Q8IZM8 581 aa11.24□□□□□ -0.61
LIG3-216ENST00000593099 PNMA1Q8ND90 353 aa11.24□□□□□ -0.61
LIG3-216ENST00000593099 TDRD3Q9H7E2 651 aaKnown RBP11.24□□□□□ -0.61
LIG3-216ENST00000593099 KANSL2Q9H9L4 492 aa11.24□□□□□ -0.61
LIG3-216ENST00000593099 SLC5A4Q9NY91 659 aa11.24□□□□□ -0.61
LIG3-216ENST00000593099 UBN2Q6ZU65 1347 aa11.24□□□□□ -0.61
LIG3-216ENST00000593099 USP14P54578 494 aa11.24□□□□□ -0.61
LIG3-216ENST00000593099 STRIP1Q5VSL9 837 aa11.24□□□□□ -0.61
LIG3-216ENST00000593099 APOBEC3FQ8IUX4 373 aaKnown RBP11.24□□□□□ -0.61
LIG3-216ENST00000593099 C2orf69Q8N8R5 385 aa11.24□□□□□ -0.61
LIG3-216ENST00000593099 TNKSO95271 1327 aa11.23□□□□□ -0.61
LIG3-216ENST00000593099 STXBP4Q6ZWJ1 553 aa11.23□□□□□ -0.61
LIG3-216ENST00000593099 OSBP2Q969R2 916 aa11.23□□□□□ -0.61
LIG3-216ENST00000593099 INTS4Q96HW7 963 aaKnown RBP11.23□□□□□ -0.61
LIG3-216ENST00000593099 LLPHQ9BRT6 129 aaKnown RBP11.23□□□□□ -0.61
LIG3-216ENST00000593099 MYL10Q9BUA6 226 aa11.23□□□□□ -0.61
LIG3-216ENST00000593099 MAP3K11Q16584 847 aa11.23□□□□□ -0.61
LIG3-216ENST00000593099 LRRC47Q8N1G4 583 aaKnown RBP11.23□□□□□ -0.61
LIG3-216ENST00000593099 KCNG4Q8TDN1 519 aa11.23□□□□□ -0.61
LIG3-216ENST00000593099 SLC10A4Q96EP9 437 aa11.23□□□□□ -0.61
LIG3-216ENST00000593099 TRIM5Q9C035 493 aa11.23□□□□□ -0.61
LIG3-216ENST00000593099 PRKAB2O43741 272 aa11.23□□□□□ -0.61
LIG3-216ENST00000593099 SEC24BO95487 1268 aa11.23□□□□□ -0.61
LIG3-216ENST00000593099 PUS7LQ9H0K6 701 aaKnown RBP11.23□□□□□ -0.61
LIG3-216ENST00000593099 XRN1Q8IZH2 1706 aaKnown RBP11.23□□□□□ -0.61
LIG3-216ENST00000593099 RPAP1Q9BWH6 1393 aaPredicted RBP11.23□□□□□ -0.61
LIG3-216ENST00000593099 CYP2E1P05181 493 aaPredicted RBP11.23□□□□□ -0.61
LIG3-216ENST00000593099 ARHGEF6Q15052 776 aa11.23□□□□□ -0.61
LIG3-216ENST00000593099 CT47A1Q5JQC4 288 aaPredicted RBP11.23□□□□□ -0.61
LIG3-216ENST00000593099 CCDC174Q6PII3 467 aa11.23□□□□□ -0.61
LIG3-216ENST00000593099 ATG9AQ7Z3C6 839 aa11.23□□□□□ -0.61
LIG3-216ENST00000593099 PDILTQ8N807 584 aa11.23□□□□□ -0.61
LIG3-216ENST00000593099 IFT172Q9UG01 1749 aa11.22□□□□□ -0.61
LIG3-216ENST00000593099 M0R2C6 588 aa11.22□□□□□ -0.61
LIG3-216ENST00000593099 FLOT1O75955 427 aa11.22□□□□□ -0.61
LIG3-216ENST00000593099 SYCP1Q15431 976 aa11.22□□□□□ -0.61
LIG3-216ENST00000593099 TSG101Q99816 390 aa11.22□□□□□ -0.61
LIG3-216ENST00000593099 PANK2Q9BZ23 570 aa11.22□□□□□ -0.61
LIG3-216ENST00000593099 PHLPP1O60346 1717 aa11.22□□□□□ -0.61
LIG3-216ENST00000593099 BRAPQ7Z569 592 aa11.22□□□□□ -0.61
LIG3-216ENST00000593099 MAP4K1Q92918 833 aa11.22□□□□□ -0.61
LIG3-216ENST00000593099 PLCD4Q9BRC7 762 aa11.22□□□□□ -0.61
LIG3-216ENST00000593099 PDCL3Q9H2J4 239 aa11.22□□□□□ -0.61
LIG3-216ENST00000593099 HOMER2Q9NSB8 354 aa11.22□□□□□ -0.61
LIG3-216ENST00000593099 ZNF142P52746 1687 aaPredicted RBP11.22□□□□□ -0.61
LIG3-216ENST00000593099 CCDC66A2RUB6 948 aa11.22□□□□□ -0.61
LIG3-216ENST00000593099 IGSF3O75054 1194 aa11.22□□□□□ -0.61
LIG3-216ENST00000593099 TBCAO75347 108 aaKnown RBP11.22□□□□□ -0.61
LIG3-216ENST00000593099 SERPINC1P01008 464 aa11.22□□□□□ -0.61
LIG3-216ENST00000593099 KANK3Q6NY19 840 aa11.22□□□□□ -0.61
LIG3-216ENST00000593099 MIGA2Q7L4E1 593 aa11.22□□□□□ -0.61
LIG3-216ENST00000593099 NCOA5Q9HCD5 579 aaKnown RBP11.22□□□□□ -0.61
LIG3-216ENST00000593099 BACH1O14867 736 aa11.21□□□□□ -0.61
LIG3-216ENST00000593099 RRP9O43818 475 aaKnown RBP11.21□□□□□ -0.61
LIG3-216ENST00000593099 ADCY7P51828 1080 aa11.21□□□□□ -0.61
LIG3-216ENST00000593099 USH1GQ495M9 461 aa11.21□□□□□ -0.61
LIG3-216ENST00000593099 KRT79Q5XKE5 535 aa11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms