RNA–Protein interactions for RNA: ENST00000588059.5

VPS4B-202, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 5

Gene VPS4B, Length 1,252 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-202ENST00000588059 ADORA1P30542 326 aa13.75□□□□□ -0.21
VPS4B-202ENST00000588059 GCLCP48506 637 aaPredicted RBP13.75□□□□□ -0.21
VPS4B-202ENST00000588059 RASGRF1Q13972 1273 aa13.75□□□□□ -0.21
VPS4B-202ENST00000588059 TRIB2Q92519 343 aa13.75□□□□□ -0.21
VPS4B-202ENST00000588059 FAM163AQ96GL9 167 aaPredicted RBP13.75□□□□□ -0.21
VPS4B-202ENST00000588059 HMX1Q9NP08 348 aaPredicted RBP13.75□□□□□ -0.21
VPS4B-202ENST00000588059 OGDHLQ9ULD0 1010 aa13.75□□□□□ -0.21
VPS4B-202ENST00000588059 FRMPD3Q5JV73 1810 aa13.75□□□□□ -0.21
VPS4B-202ENST00000588059 UNC80Q8N2C7 3258 aa13.75□□□□□ -0.21
VPS4B-202ENST00000588059 SIPA1L1O43166 1804 aa13.74□□□□□ -0.21
VPS4B-202ENST00000588059 MROH7-TTC4A0A0A0MT08 1334 aa13.74□□□□□ -0.21
VPS4B-202ENST00000588059 PDS5AQ29RF7 1337 aaKnown RBP13.74□□□□□ -0.21
VPS4B-202ENST00000588059 TBC1D12O60347 775 aa13.74□□□□□ -0.21
VPS4B-202ENST00000588059 HMGCS2P54868 508 aa13.74□□□□□ -0.21
VPS4B-202ENST00000588059 RHBDL3P58872 404 aa13.74□□□□□ -0.21
VPS4B-202ENST00000588059 SPP2Q13103 211 aa13.74□□□□□ -0.21
VPS4B-202ENST00000588059 CCDC102BQ68D86 513 aa13.74□□□□□ -0.21
VPS4B-202ENST00000588059 ZNF280CQ8ND82 737 aa13.74□□□□□ -0.21
VPS4B-202ENST00000588059 ASCC2Q9H1I8 757 aaPredicted RBP13.74□□□□□ -0.21
VPS4B-202ENST00000588059 ABCF2Q9UG63 623 aa13.74□□□□□ -0.21
VPS4B-202ENST00000588059 COL2A1P02458 1487 aaPredicted RBP13.74□□□□□ -0.21
VPS4B-202ENST00000588059 ZNF521Q96K83 1311 aa13.73□□□□□ -0.21
VPS4B-202ENST00000588059 PABPC4Q13310 644 aaKnown RBP eCLIP13.73□□□□□ -0.21
VPS4B-202ENST00000588059 MAP3K21Q5TCX8 1036 aa13.73□□□□□ -0.21
VPS4B-202ENST00000588059 SLF2Q8IX21 1173 aa13.73□□□□□ -0.21
VPS4B-202ENST00000588059 ZNF384Q8TF68 577 aa13.73□□□□□ -0.21
VPS4B-202ENST00000588059 SSH1Q8WYL5 1049 aa13.73□□□□□ -0.21
VPS4B-202ENST00000588059 UBE2OQ9C0C9 1292 aaKnown RBP13.73□□□□□ -0.21
VPS4B-202ENST00000588059 OSBPL5Q9H0X9 879 aaPredicted RBP13.73□□□□□ -0.21
VPS4B-202ENST00000588059 XPO5Q9HAV4 1204 aaKnown RBP eCLIP13.73□□□□□ -0.21
VPS4B-202ENST00000588059 MORF4L1Q9UBU8 362 aa13.73□□□□□ -0.21
VPS4B-202ENST00000588059 GPR75-ASB3A0A0A6YYF3 556 aa13.72□□□□□ -0.21
VPS4B-202ENST00000588059 NPM3O75607 178 aaKnown RBP13.72□□□□□ -0.21
VPS4B-202ENST00000588059 PRKAR2AP13861 404 aaKnown RBP13.72□□□□□ -0.21
VPS4B-202ENST00000588059 IL15P40933 162 aaPredicted RBP13.72□□□□□ -0.21
VPS4B-202ENST00000588059 RRP1BQ14684 758 aaKnown RBP13.72□□□□□ -0.21
VPS4B-202ENST00000588059 TBC1D2Q9BYX2 928 aa13.72□□□□□ -0.21
VPS4B-202ENST00000588059 PA2G4Q9UQ80 394 aaKnown RBP13.72□□□□□ -0.21
VPS4B-202ENST00000588059 MAST2Q6P0Q8 1798 aa13.72□□□□□ -0.21
VPS4B-202ENST00000588059 UBTFL1P0CB47 393 aaPredicted RBP13.71□□□□□ -0.21
VPS4B-202ENST00000588059 COL6A1P12109 1028 aa13.71□□□□□ -0.21
VPS4B-202ENST00000588059 CYP2B6P20813 491 aa13.71□□□□□ -0.21
VPS4B-202ENST00000588059 CAP2P40123 477 aa13.71□□□□□ -0.21
VPS4B-202ENST00000588059 MECOMQ03112 1051 aa13.71□□□□□ -0.21
VPS4B-202ENST00000588059 SH3D19Q5HYK7 790 aa13.71□□□□□ -0.21
VPS4B-202ENST00000588059 SPTY2D1Q68D10 685 aaPredicted RBP13.71□□□□□ -0.21
VPS4B-202ENST00000588059 COL25A1Q9BXS0 654 aaPredicted RBP13.71□□□□□ -0.21
VPS4B-202ENST00000588059 CDK5RAP2Q96SN8 1893 aa13.7□□□□□ -0.22
VPS4B-202ENST00000588059 USP17L5A8MUK1 530 aa13.7□□□□□ -0.22
VPS4B-202ENST00000588059 PEX10O60683 326 aa13.69□□□□□ -0.22
VPS4B-202ENST00000588059 XRCC5P13010 732 aaKnown RBP13.69□□□□□ -0.22
VPS4B-202ENST00000588059 TIMM10P62072 90 aa13.69□□□□□ -0.22
VPS4B-202ENST00000588059 LRRC26Q2I0M4 334 aa13.69□□□□□ -0.22
VPS4B-202ENST00000588059 ERICH6Q7L0X2 663 aa13.69□□□□□ -0.22
VPS4B-202ENST00000588059 PHF6Q8IWS0 365 aaKnown RBP eCLIP13.69□□□□□ -0.22
VPS4B-202ENST00000588059 SOCS4Q8WXH5 440 aa13.69□□□□□ -0.22
VPS4B-202ENST00000588059 NUDT12Q9BQG2 462 aa13.69□□□□□ -0.22
VPS4B-202ENST00000588059 TXNRD2Q9NNW7 524 aa13.69□□□□□ -0.22
VPS4B-202ENST00000588059 COPRSQ9NQ92 184 aa13.69□□□□□ -0.22
VPS4B-202ENST00000588059 MAP4K4O95819 1239 aaPredicted RBP13.68□□□□□ -0.22
VPS4B-202ENST00000588059 ZKSCAN1P17029 563 aaPredicted RBP13.68□□□□□ -0.22
VPS4B-202ENST00000588059 HOXA7P31268 230 aaPredicted RBP13.68□□□□□ -0.22
VPS4B-202ENST00000588059 IRX3P78415 501 aaPredicted RBP13.68□□□□□ -0.22
VPS4B-202ENST00000588059 MDM2Q00987 491 aaPredicted RBP13.68□□□□□ -0.22
VPS4B-202ENST00000588059 CACNB2Q08289 660 aaPredicted RBP13.68□□□□□ -0.22
VPS4B-202ENST00000588059 MTMR2Q13614 643 aa13.68□□□□□ -0.22
VPS4B-202ENST00000588059 XAGE2Q96GT9 111 aa13.68□□□□□ -0.22
VPS4B-202ENST00000588059 GUCD1Q96NT3 240 aa13.68□□□□□ -0.22
VPS4B-202ENST00000588059 AS3MTQ9HBK9 375 aa13.68□□□□□ -0.22
VPS4B-202ENST00000588059 LTBP2Q14767 1821 aa13.68□□□□□ -0.22
VPS4B-202ENST00000588059 FOCADQ5VW36 1801 aa13.68□□□□□ -0.22
VPS4B-202ENST00000588059 A0A1B0GUL7 405 aa13.67□□□□□ -0.22
VPS4B-202ENST00000588059 POTEB2H3BUK9 544 aa13.67□□□□□ -0.22
VPS4B-202ENST00000588059 CCND3P30281 292 aaPredicted RBP13.67□□□□□ -0.22
VPS4B-202ENST00000588059 BACE1P56817 501 aa13.67□□□□□ -0.22
VPS4B-202ENST00000588059 HERVK_113P62684 666 aa13.67□□□□□ -0.22
VPS4B-202ENST00000588059 LHX8Q68G74 356 aa13.67□□□□□ -0.22
VPS4B-202ENST00000588059 FAM109BQ6ICB4 259 aaPredicted RBP13.67□□□□□ -0.22
VPS4B-202ENST00000588059 PI16Q6UXB8 463 aa13.67□□□□□ -0.22
VPS4B-202ENST00000588059 TRMT44Q8IYL2 757 aaKnown RBP13.67□□□□□ -0.22
VPS4B-202ENST00000588059 FAM9BQ8IZU0 186 aa13.67□□□□□ -0.22
VPS4B-202ENST00000588059 GPRC5AQ8NFJ5 357 aa13.67□□□□□ -0.22
VPS4B-202ENST00000588059 USP6NLQ92738 828 aa13.67□□□□□ -0.22
VPS4B-202ENST00000588059 NSUN4Q96CB9 384 aaKnown RBP13.67□□□□□ -0.22
VPS4B-202ENST00000588059 P2RX7Q99572 595 aaKnown RBP13.67□□□□□ -0.22
VPS4B-202ENST00000588059 WDR18Q9BV38 432 aa13.67□□□□□ -0.22
VPS4B-202ENST00000588059 HERC5Q9UII4 1024 aaKnown RBP13.67□□□□□ -0.22
VPS4B-202ENST00000588059 LAMA2P24043 3122 aaKnown RBP13.66□□□□□ -0.22
VPS4B-202ENST00000588059 MAPK4P31152 587 aa13.66□□□□□ -0.22
VPS4B-202ENST00000588059 GSTO1P78417 241 aa13.66□□□□□ -0.22
VPS4B-202ENST00000588059 JAG1P78504 1218 aa13.66□□□□□ -0.22
VPS4B-202ENST00000588059 PDE3AQ14432 1141 aa13.66□□□□□ -0.22
VPS4B-202ENST00000588059 MVPQ14764 893 aaKnown RBP13.66□□□□□ -0.22
VPS4B-202ENST00000588059 CCL14Q16627 93 aa13.66□□□□□ -0.22
VPS4B-202ENST00000588059 ALDH1L2Q3SY69 923 aa13.66□□□□□ -0.22
VPS4B-202ENST00000588059 TEX11Q8IYF3 940 aa13.66□□□□□ -0.22
VPS4B-202ENST00000588059 PORCNQ9H237 461 aa13.66□□□□□ -0.22
VPS4B-202ENST00000588059 TMOD4Q9NZQ9 345 aa13.66□□□□□ -0.22
VPS4B-202ENST00000588059 HMG20BQ9P0W2 317 aa13.66□□□□□ -0.22
VPS4B-202ENST00000588059 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms