RNA–Protein interactions for RNA: ENST00000577085.1

SF3B3-215, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 4

Gene SF3B3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-215ENST00000577085 HLA-DOAP06340 250 aa18.85■□□□□ 0.61
SF3B3-215ENST00000577085 USP5P45974 858 aa18.85■□□□□ 0.61
SF3B3-215ENST00000577085 ANTXR1Q9H6X2 564 aa18.85■□□□□ 0.61
SF3B3-215ENST00000577085 TRIM75PA6NK02 468 aa18.84■□□□□ 0.61
SF3B3-215ENST00000577085 SLURP2P0DP57 97 aa18.84■□□□□ 0.61
SF3B3-215ENST00000577085 SOX10P56693 466 aa18.84■□□□□ 0.61
SF3B3-215ENST00000577085 MLLT1Q03111 559 aaPredicted RBP18.84■□□□□ 0.61
SF3B3-215ENST00000577085 GADL1Q6ZQY3 521 aa18.84■□□□□ 0.61
SF3B3-215ENST00000577085 LRRCC1Q9C099 1032 aa18.84■□□□□ 0.61
SF3B3-215ENST00000577085 GOLIM4O00461 696 aa18.83■□□□□ 0.6
SF3B3-215ENST00000577085 DYNLL1P63167 89 aaKnown RBP18.83■□□□□ 0.6
SF3B3-215ENST00000577085 PPIL4Q8WUA2 492 aaKnown RBP eCLIP18.83■□□□□ 0.6
SF3B3-215ENST00000577085 PARK7Q99497 189 aaKnown RBP18.83■□□□□ 0.6
SF3B3-215ENST00000577085 SAP30BPQ9UHR5 308 aaKnown RBP18.83■□□□□ 0.6
SF3B3-215ENST00000577085 AFG3L2Q9Y4W6 797 aa18.83■□□□□ 0.6
SF3B3-215ENST00000577085 A0A0G2JLL6 359 aaPredicted RBP18.82■□□□□ 0.6
SF3B3-215ENST00000577085 SLC9C2Q5TAH2 1124 aa18.82■□□□□ 0.6
SF3B3-215ENST00000577085 PRRT2Q7Z6L0 340 aaPredicted RBP18.82■□□□□ 0.6
SF3B3-215ENST00000577085 PALD1Q9ULE6 856 aa18.82■□□□□ 0.6
SF3B3-215ENST00000577085 PTPN22Q9Y2R2 807 aa18.82■□□□□ 0.6
SF3B3-215ENST00000577085 MAGEB6P1A0A0J9YX57 407 aa18.81■□□□□ 0.6
SF3B3-215ENST00000577085 CAP2P40123 477 aa18.81■□□□□ 0.6
SF3B3-215ENST00000577085 SLC4A8Q2Y0W8 1093 aa18.81■□□□□ 0.6
SF3B3-215ENST00000577085 FOXP4Q8IVH2 680 aaPredicted RBP18.81■□□□□ 0.6
SF3B3-215ENST00000577085 TBC1D2Q9BYX2 928 aa18.81■□□□□ 0.6
SF3B3-215ENST00000577085 AS3MTQ9HBK9 375 aa18.81■□□□□ 0.6
SF3B3-215ENST00000577085 CPA4Q9UI42 421 aa18.81■□□□□ 0.6
SF3B3-215ENST00000577085 DOCK1Q14185 1865 aa18.81■□□□□ 0.6
SF3B3-215ENST00000577085 GPATCH3Q96I76 525 aa18.8■□□□□ 0.6
SF3B3-215ENST00000577085 DDX24Q9GZR7 859 aaKnown RBP eCLIP18.8■□□□□ 0.6
SF3B3-215ENST00000577085 BOLA2Q9H3K6 86 aa18.8■□□□□ 0.6
SF3B3-215ENST00000577085 PAG1Q9NWQ8 432 aa18.8■□□□□ 0.6
SF3B3-215ENST00000577085 FRMD4AQ9P2Q2 1039 aaPredicted RBP18.8■□□□□ 0.6
SF3B3-215ENST00000577085 USP17L5A8MUK1 530 aa18.79■□□□□ 0.6
SF3B3-215ENST00000577085 ECM2O94769 699 aaPredicted RBP18.79■□□□□ 0.6
SF3B3-215ENST00000577085 PDE6AP16499 860 aa18.79■□□□□ 0.6
SF3B3-215ENST00000577085 RGS19P49795 217 aa18.79■□□□□ 0.6
SF3B3-215ENST00000577085 LACTBP83111 547 aaPredicted RBP18.79■□□□□ 0.6
SF3B3-215ENST00000577085 CCDC84Q86UT8 332 aaPredicted RBP18.79■□□□□ 0.6
SF3B3-215ENST00000577085 ZNF280CQ8ND82 737 aa18.79■□□□□ 0.6
SF3B3-215ENST00000577085 SMCR8Q8TEV9 937 aaPredicted RBP18.79■□□□□ 0.6
SF3B3-215ENST00000577085 MYO5AQ9Y4I1 1855 aaKnown RBP18.79■□□□□ 0.6
SF3B3-215ENST00000577085 SMARCA5O60264 1052 aaPredicted RBP18.78■□□□□ 0.6
SF3B3-215ENST00000577085 GNRH1P01148 92 aa18.78■□□□□ 0.6
SF3B3-215ENST00000577085 ASNSP08243 561 aa18.78■□□□□ 0.6
SF3B3-215ENST00000577085 CYP2C8P10632 490 aa18.78■□□□□ 0.6
SF3B3-215ENST00000577085 ATP5JP18859 108 aa18.78■□□□□ 0.6
SF3B3-215ENST00000577085 RRP1P56182 461 aaKnown RBP18.78■□□□□ 0.6
SF3B3-215ENST00000577085 SPP2Q13103 211 aa18.78■□□□□ 0.6
SF3B3-215ENST00000577085 MOGSQ13724 837 aa18.78■□□□□ 0.6
SF3B3-215ENST00000577085 GPAT2Q6NUI2 795 aa18.78■□□□□ 0.6
SF3B3-215ENST00000577085 TTC6Q86TZ1 520 aa18.78■□□□□ 0.6
SF3B3-215ENST00000577085 CRNKL1Q9BZJ0 848 aaKnown RBP18.78■□□□□ 0.6
SF3B3-215ENST00000577085 SLC45A1Q9Y2W3 748 aa18.78■□□□□ 0.6
SF3B3-215ENST00000577085 ZNF532Q9HCE3 1301 aa18.77■□□□□ 0.6
SF3B3-215ENST00000577085 PABPC4Q13310 644 aaKnown RBP eCLIP18.77■□□□□ 0.6
SF3B3-215ENST00000577085 C17orf99Q6UX52 265 aa18.77■□□□□ 0.6
SF3B3-215ENST00000577085 NBPF11Q86T75 865 aa18.77■□□□□ 0.6
SF3B3-215ENST00000577085 PNMA3Q9UL41 463 aa18.77■□□□□ 0.6
SF3B3-215ENST00000577085 AGTPBP1Q9UPW5 1226 aa18.77■□□□□ 0.6
SF3B3-215ENST00000577085 FMNL1O95466 1100 aaPredicted RBP18.76■□□□□ 0.59
SF3B3-215ENST00000577085 POLR3DP05423 398 aaPredicted RBP18.76■□□□□ 0.59
SF3B3-215ENST00000577085 HOXD10P28358 340 aa18.76■□□□□ 0.59
SF3B3-215ENST00000577085 SLC9C1Q4G0N8 1177 aa18.76■□□□□ 0.59
SF3B3-215ENST00000577085 PROCA1Q8NCQ7 364 aaPredicted RBP18.76■□□□□ 0.59
SF3B3-215ENST00000577085 HAUS7Q99871 368 aa18.76■□□□□ 0.59
SF3B3-215ENST00000577085 SERPINB13Q9UIV8 391 aa18.76■□□□□ 0.59
SF3B3-215ENST00000577085 FOCADQ5VW36 1801 aa18.75■□□□□ 0.59
SF3B3-215ENST00000577085 GDF11O95390 407 aa18.75■□□□□ 0.59
SF3B3-215ENST00000577085 PSMC4P43686 418 aa18.75■□□□□ 0.59
SF3B3-215ENST00000577085 HMGCS2P54868 508 aa18.75■□□□□ 0.59
SF3B3-215ENST00000577085 ZSCAN25Q6NSZ9 544 aa18.75■□□□□ 0.59
SF3B3-215ENST00000577085 EDC3Q96F86 508 aaKnown RBP18.75■□□□□ 0.59
SF3B3-215ENST00000577085 RIOK1Q9BRS2 568 aaKnown RBP18.75■□□□□ 0.59
SF3B3-215ENST00000577085 ARHGAP39Q9C0H5 1083 aa18.75■□□□□ 0.59
SF3B3-215ENST00000577085 DCTPP1Q9H773 170 aa18.75■□□□□ 0.59
SF3B3-215ENST00000577085 ECHDC1Q9NTX5 307 aa18.75■□□□□ 0.59
SF3B3-215ENST00000577085 GINM1Q9NU53 330 aa18.75■□□□□ 0.59
SF3B3-215ENST00000577085 TMOD4Q9NZQ9 345 aa18.75■□□□□ 0.59
SF3B3-215ENST00000577085 ZBTB47Q9UFB7 747 aaPredicted RBP18.75■□□□□ 0.59
SF3B3-215ENST00000577085 PRMT2P55345 433 aa18.74■□□□□ 0.59
SF3B3-215ENST00000577085 FCGRTP55899 365 aa18.74■□□□□ 0.59
SF3B3-215ENST00000577085 RRP1BQ14684 758 aaKnown RBP18.74■□□□□ 0.59
SF3B3-215ENST00000577085 METTL16Q86W50 562 aaKnown RBP18.74■□□□□ 0.59
SF3B3-215ENST00000577085 DNAJC18Q9H819 358 aa18.74■□□□□ 0.59
SF3B3-215ENST00000577085 PTCH2Q9Y6C5 1203 aa18.74■□□□□ 0.59
SF3B3-215ENST00000577085 CDK5RAP2Q96SN8 1893 aa18.73■□□□□ 0.59
SF3B3-215ENST00000577085 OSBPP22059 807 aa18.73■□□□□ 0.59
SF3B3-215ENST00000577085 CAP1Q01518 475 aa18.73■□□□□ 0.59
SF3B3-215ENST00000577085 MTMR2Q13614 643 aa18.73■□□□□ 0.59
SF3B3-215ENST00000577085 TREML2Q5T2D2 321 aa18.73■□□□□ 0.59
SF3B3-215ENST00000577085 DDRGK1Q96HY6 314 aa18.73■□□□□ 0.59
SF3B3-215ENST00000577085 EHD4Q9H223 541 aa18.73■□□□□ 0.59
SF3B3-215ENST00000577085 MCM9Q9NXL9 1143 aa18.73■□□□□ 0.59
SF3B3-215ENST00000577085 ZBTB21Q9ULJ3 1066 aa18.73■□□□□ 0.59
SF3B3-215ENST00000577085 ADGRA2Q96PE1 1338 aa18.73■□□□□ 0.59
SF3B3-215ENST00000577085 ATAD5Q96QE3 1844 aa18.72■□□□□ 0.59
SF3B3-215ENST00000577085 TCRBV5S4A2TA0A5A2 114 aa18.72■□□□□ 0.59
SF3B3-215ENST00000577085 ADD2P35612 726 aa18.72■□□□□ 0.59
SF3B3-215ENST00000577085 AMOTL1Q8IY63 956 aa18.72■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms