RNA–Protein interactions for RNA: ENST00000576033.5

CCDC40-215, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 466 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-215ENST00000576033 SLC4A4Q9Y6R1 1079 aa9.53□□□□□ -0.88
CCDC40-215ENST00000576033 ZSWIM8A7E2V4 1837 aa9.53□□□□□ -0.88
CCDC40-215ENST00000576033 WDR33Q9C0J8 1336 aaKnown RBP9.53□□□□□ -0.88
CCDC40-215ENST00000576033 GSG1L2A8MUP6 293 aa9.52□□□□□ -0.89
CCDC40-215ENST00000576033 PHF20L1A8MW92 1017 aa9.52□□□□□ -0.89
CCDC40-215ENST00000576033 GDF11O95390 407 aa9.52□□□□□ -0.89
CCDC40-215ENST00000576033 SLC10A3P09131 477 aa9.52□□□□□ -0.89
CCDC40-215ENST00000576033 ZNF157P51786 506 aaPredicted RBP9.52□□□□□ -0.89
CCDC40-215ENST00000576033 DEFB115Q30KQ5 88 aa9.52□□□□□ -0.89
CCDC40-215ENST00000576033 LDLRAD1Q5T700 205 aa9.52□□□□□ -0.89
CCDC40-215ENST00000576033 RGMBQ6NW40 437 aa9.52□□□□□ -0.89
CCDC40-215ENST00000576033 CLEC10AQ8IUN9 316 aa9.52□□□□□ -0.89
CCDC40-215ENST00000576033 NKX2-3Q8TAU0 364 aa9.52□□□□□ -0.89
CCDC40-215ENST00000576033 AIDAQ96BJ3 306 aa9.52□□□□□ -0.89
CCDC40-215ENST00000576033 DYNLL2Q96FJ2 89 aa9.52□□□□□ -0.89
CCDC40-215ENST00000576033 STRBPQ96SI9 672 aaKnown RBP9.52□□□□□ -0.89
CCDC40-215ENST00000576033 TACC3Q9Y6A5 838 aa9.52□□□□□ -0.89
CCDC40-215ENST00000576033 GREB1LQ9C091 1923 aaPredicted RBP9.52□□□□□ -0.89
CCDC40-215ENST00000576033 LOC285556D6RIA3 1793 aa9.51□□□□□ -0.89
CCDC40-215ENST00000576033 NF2P35240 595 aa9.51□□□□□ -0.89
CCDC40-215ENST00000576033 MAP3K11Q16584 847 aa9.51□□□□□ -0.89
CCDC40-215ENST00000576033 SUPT20HL1Q3ZLR7 823 aa9.51□□□□□ -0.89
CCDC40-215ENST00000576033 CWC27Q6UX04 472 aaKnown RBP9.51□□□□□ -0.89
CCDC40-215ENST00000576033 ARMC9Q7Z3E5 817 aa9.51□□□□□ -0.89
CCDC40-215ENST00000576033 CRNKL1Q9BZJ0 848 aaKnown RBP9.51□□□□□ -0.89
CCDC40-215ENST00000576033 MCM9Q9NXL9 1143 aa9.51□□□□□ -0.89
CCDC40-215ENST00000576033 TSKSQ9UJT2 592 aa9.51□□□□□ -0.89
CCDC40-215ENST00000576033 PLCG2P16885 1265 aa9.5□□□□□ -0.89
CCDC40-215ENST00000576033 ZSCAN25Q6NSZ9 544 aa9.5□□□□□ -0.89
CCDC40-215ENST00000576033 OPTNQ96CV9 577 aa9.5□□□□□ -0.89
CCDC40-215ENST00000576033 OTUD5Q96G74 571 aa9.5□□□□□ -0.89
CCDC40-215ENST00000576033 WNK4Q96J92 1243 aa9.5□□□□□ -0.89
CCDC40-215ENST00000576033 ZNF341Q9BYN7 854 aa9.5□□□□□ -0.89
CCDC40-215ENST00000576033 XPO5Q9HAV4 1204 aaKnown RBP eCLIP9.5□□□□□ -0.89
CCDC40-215ENST00000576033 INCENPQ9NQS7 918 aa9.5□□□□□ -0.89
CCDC40-215ENST00000576033 USP17L12C9JPN9 530 aa9.49□□□□□ -0.89
CCDC40-215ENST00000576033 USP17L21D6R901 530 aa9.49□□□□□ -0.89
CCDC40-215ENST00000576033 PPP1R12BO60237 982 aaPredicted RBP9.49□□□□□ -0.89
CCDC40-215ENST00000576033 ZFYP08048 801 aaPredicted RBP9.49□□□□□ -0.89
CCDC40-215ENST00000576033 SHMT1P34896 483 aa9.49□□□□□ -0.89
CCDC40-215ENST00000576033 IREB2P48200 963 aaKnown RBP9.49□□□□□ -0.89
CCDC40-215ENST00000576033 FKBP1BP68106 108 aa9.49□□□□□ -0.89
CCDC40-215ENST00000576033 KIF23Q02241 960 aaPredicted RBP9.49□□□□□ -0.89
CCDC40-215ENST00000576033 CTR9Q6PD62 1173 aa9.49□□□□□ -0.89
CCDC40-215ENST00000576033 BACH2Q9BYV9 841 aa9.49□□□□□ -0.89
CCDC40-215ENST00000576033 ZNF112Q9UJU3 913 aa9.49□□□□□ -0.89
CCDC40-215ENST00000576033 MINDY4BA8MYZ0 360 aa9.48□□□□□ -0.89
CCDC40-215ENST00000576033 NPM3O75607 178 aaKnown RBP9.48□□□□□ -0.89
CCDC40-215ENST00000576033 POLR3DP05423 398 aaPredicted RBP9.48□□□□□ -0.89
CCDC40-215ENST00000576033 TDO2P48775 406 aa9.48□□□□□ -0.89
CCDC40-215ENST00000576033 MAP3K9P80192 1104 aa9.48□□□□□ -0.89
CCDC40-215ENST00000576033 GABPAQ06546 454 aa9.48□□□□□ -0.89
CCDC40-215ENST00000576033 SPRYD7Q5W111 196 aa9.48□□□□□ -0.89
CCDC40-215ENST00000576033 DCAF15Q66K64 600 aa9.48□□□□□ -0.89
CCDC40-215ENST00000576033 ANKRD13AQ8IZ07 590 aa9.48□□□□□ -0.89
CCDC40-215ENST00000576033 IFNL3Q8IZI9 196 aa9.48□□□□□ -0.89
CCDC40-215ENST00000576033 CRACR2BQ8N4Y2 399 aaPredicted RBP9.48□□□□□ -0.89
CCDC40-215ENST00000576033 NBPF3Q9H094 633 aa9.48□□□□□ -0.89
CCDC40-215ENST00000576033 TAF6LQ9Y6J9 622 aa9.48□□□□□ -0.89
CCDC40-215ENST00000576033 CCDC171Q6TFL3 1326 aa9.48□□□□□ -0.89
CCDC40-215ENST00000576033 HTTP42858 3142 aa9.47□□□□□ -0.89
CCDC40-215ENST00000576033 MYH4Q9Y623 1939 aa9.47□□□□□ -0.89
CCDC40-215ENST00000576033 IGF2BP3O00425 579 aaKnown RBP eCLIP9.47□□□□□ -0.89
CCDC40-215ENST00000576033 IRF6O14896 467 aa9.47□□□□□ -0.89
CCDC40-215ENST00000576033 PRDM1O75626 825 aa9.47□□□□□ -0.89
CCDC40-215ENST00000576033 GH2P01242 217 aa9.47□□□□□ -0.89
CCDC40-215ENST00000576033 APPP05067 770 aa9.47□□□□□ -0.89
CCDC40-215ENST00000576033 AKR1B1P15121 316 aa9.47□□□□□ -0.89
CCDC40-215ENST00000576033 CHMLP26374 656 aa9.47□□□□□ -0.89
CCDC40-215ENST00000576033 HAND2P61296 217 aa9.47□□□□□ -0.89
CCDC40-215ENST00000576033 MAP3K10Q02779 954 aa9.47□□□□□ -0.89
CCDC40-215ENST00000576033 CTDSPL2Q05D32 466 aa9.47□□□□□ -0.89
CCDC40-215ENST00000576033 COL9A3Q14050 684 aaPredicted RBP9.47□□□□□ -0.89
CCDC40-215ENST00000576033 C12orf60Q5U649 245 aa9.47□□□□□ -0.89
CCDC40-215ENST00000576033 METTL16Q86W50 562 aaKnown RBP9.47□□□□□ -0.89
CCDC40-215ENST00000576033 SCYL3Q8IZE3 742 aa9.47□□□□□ -0.89
CCDC40-215ENST00000576033 SLC10A4Q96EP9 437 aa9.47□□□□□ -0.89
CCDC40-215ENST00000576033 HHIPL1Q96JK4 782 aa9.47□□□□□ -0.89
CCDC40-215ENST00000576033 R3HDMLQ9H3Y0 253 aa9.47□□□□□ -0.89
CCDC40-215ENST00000576033 DIAPH3Q9NSV4 1193 aa9.47□□□□□ -0.89
CCDC40-215ENST00000576033 PI4KBQ9UBF8 816 aa9.47□□□□□ -0.89
CCDC40-215ENST00000576033 CSADQ9Y600 493 aa9.47□□□□□ -0.89
CCDC40-215ENST00000576033 ROBO3Q96MS0 1386 aa9.47□□□□□ -0.89
CCDC40-215ENST00000576033 CENPFP49454 3210 aa9.46□□□□□ -0.89
CCDC40-215ENST00000576033 SPDYE5A6NIY4 337 aa9.46□□□□□ -0.9
CCDC40-215ENST00000576033 HLA-DOAP06340 250 aa9.46□□□□□ -0.9
CCDC40-215ENST00000576033 HSPA1AP0DMV8 641 aaKnown RBP9.46□□□□□ -0.9
CCDC40-215ENST00000576033 HSPA1BP0DMV9 641 aaKnown RBP9.46□□□□□ -0.9
CCDC40-215ENST00000576033 HSPD1P10809 573 aaKnown RBP9.46□□□□□ -0.9
CCDC40-215ENST00000576033 PTPRAP18433 802 aa9.46□□□□□ -0.9
CCDC40-215ENST00000576033 GUCY1A2P33402 732 aa9.46□□□□□ -0.9
CCDC40-215ENST00000576033 PTH1RQ03431 593 aa9.46□□□□□ -0.9
CCDC40-215ENST00000576033 MOGSQ13724 837 aa9.46□□□□□ -0.9
CCDC40-215ENST00000576033 C8orf34Q49A92 452 aa9.46□□□□□ -0.9
CCDC40-215ENST00000576033 MCMDC2Q4G0Z9 681 aa9.46□□□□□ -0.9
CCDC40-215ENST00000576033 NOL9Q5SY16 702 aaKnown RBP9.46□□□□□ -0.9
CCDC40-215ENST00000576033 RASGRP2Q7LDG7 609 aa9.46□□□□□ -0.9
CCDC40-215ENST00000576033 TBC1D10CQ8IV04 446 aa9.46□□□□□ -0.9
CCDC40-215ENST00000576033 JMYQ8N9B5 988 aa9.46□□□□□ -0.9
CCDC40-215ENST00000576033 BRI3BPQ8WY22 251 aa9.46□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms