RNA–Protein interactions for RNA: ENST00000575976.1

NUP88-211, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-211ENST00000575976 CSRNP1Q96S65 589 aa10.24□□□□□ -0.77
NUP88-211ENST00000575976 BEGAINQ9BUH8 593 aa10.24□□□□□ -0.77
NUP88-211ENST00000575976 NACAP1Q9BZK3 213 aa10.24□□□□□ -0.77
NUP88-211ENST00000575976 PI4KBQ9UBF8 816 aa10.24□□□□□ -0.77
NUP88-211ENST00000575976 COL2A1P02458 1487 aaPredicted RBP10.23□□□□□ -0.77
NUP88-211ENST00000575976 CDK5RAP2Q96SN8 1893 aa10.23□□□□□ -0.77
NUP88-211ENST00000575976 FAM196BA6NMK8 535 aa10.23□□□□□ -0.77
NUP88-211ENST00000575976 MINDY4BA8MYZ0 360 aa10.23□□□□□ -0.77
NUP88-211ENST00000575976 USP2O75604 605 aaPredicted RBP10.23□□□□□ -0.77
NUP88-211ENST00000575976 FGAP02671 866 aa10.23□□□□□ -0.77
NUP88-211ENST00000575976 HLA-DOAP06340 250 aa10.23□□□□□ -0.77
NUP88-211ENST00000575976 NF2P35240 595 aa10.23□□□□□ -0.77
NUP88-211ENST00000575976 VEGFBP49765 207 aa10.23□□□□□ -0.77
NUP88-211ENST00000575976 PTH1RQ03431 593 aa10.23□□□□□ -0.77
NUP88-211ENST00000575976 ALX1Q15699 326 aa10.23□□□□□ -0.77
NUP88-211ENST00000575976 SBK1Q52WX2 424 aa10.23□□□□□ -0.77
NUP88-211ENST00000575976 C12orf60Q5U649 245 aa10.23□□□□□ -0.77
NUP88-211ENST00000575976 MOB2Q70IA6 237 aa10.23□□□□□ -0.77
NUP88-211ENST00000575976 FOXP4Q8IVH2 680 aaPredicted RBP10.23□□□□□ -0.77
NUP88-211ENST00000575976 DSCC1Q9BVC3 393 aa10.23□□□□□ -0.77
NUP88-211ENST00000575976 NAPBQ9H115 298 aa10.23□□□□□ -0.77
NUP88-211ENST00000575976 FOCADQ5VW36 1801 aa10.22□□□□□ -0.77
NUP88-211ENST00000575976 TBC1D12O60347 775 aa10.22□□□□□ -0.77
NUP88-211ENST00000575976 MAP3K10Q02779 954 aa10.22□□□□□ -0.77
NUP88-211ENST00000575976 TTLL12Q14166 644 aaPredicted RBP10.22□□□□□ -0.77
NUP88-211ENST00000575976 DEFB115Q30KQ5 88 aa10.22□□□□□ -0.77
NUP88-211ENST00000575976 KIAA1211Q6ZU35 1233 aa10.22□□□□□ -0.77
NUP88-211ENST00000575976 AMOTL1Q8IY63 956 aa10.22□□□□□ -0.77
NUP88-211ENST00000575976 HOOK2Q96ED9 719 aa10.22□□□□□ -0.77
NUP88-211ENST00000575976 DYNLL2Q96FJ2 89 aa10.22□□□□□ -0.77
NUP88-211ENST00000575976 LSG1Q9H089 658 aaKnown RBP10.22□□□□□ -0.77
NUP88-211ENST00000575976 XPO5Q9HAV4 1204 aaKnown RBP eCLIP10.22□□□□□ -0.77
NUP88-211ENST00000575976 GBA2Q9HCG7 927 aaPredicted RBP10.22□□□□□ -0.77
NUP88-211ENST00000575976 ARPP21Q9UBL0 812 aaPredicted RBP10.22□□□□□ -0.77
NUP88-211ENST00000575976 ANGEL1Q9UNK9 670 aaKnown RBP10.22□□□□□ -0.77
NUP88-211ENST00000575976 UBE2Q2LH0YL09 131 aa10.21□□□□□ -0.77
NUP88-211ENST00000575976 PPP1R12BO60237 982 aaPredicted RBP10.21□□□□□ -0.77
NUP88-211ENST00000575976 HSPA8P11142 646 aaKnown RBP10.21□□□□□ -0.77
NUP88-211ENST00000575976 GABPAQ06546 454 aa10.21□□□□□ -0.77
NUP88-211ENST00000575976 PPARAQ07869 468 aa10.21□□□□□ -0.77
NUP88-211ENST00000575976 DCAF15Q66K64 600 aa10.21□□□□□ -0.77
NUP88-211ENST00000575976 ARMC9Q7Z3E5 817 aa10.21□□□□□ -0.77
NUP88-211ENST00000575976 METTL16Q86W50 562 aaKnown RBP10.21□□□□□ -0.77
NUP88-211ENST00000575976 STK11IPQ8N1F8 1099 aa10.21□□□□□ -0.77
NUP88-211ENST00000575976 CRACR2BQ8N4Y2 399 aaPredicted RBP10.21□□□□□ -0.77
NUP88-211ENST00000575976 C2orf69Q8N8R5 385 aa10.21□□□□□ -0.77
NUP88-211ENST00000575976 MAP4K1Q92918 833 aa10.21□□□□□ -0.77
NUP88-211ENST00000575976 ZNF341Q9BYN7 854 aa10.21□□□□□ -0.77
NUP88-211ENST00000575976 EHD4Q9H223 541 aa10.21□□□□□ -0.77
NUP88-211ENST00000575976 DNAJC18Q9H819 358 aa10.21□□□□□ -0.77
NUP88-211ENST00000575976 ANO2Q9NQ90 1003 aa10.21□□□□□ -0.77
NUP88-211ENST00000575976 SERPINB13Q9UIV8 391 aa10.21□□□□□ -0.77
NUP88-211ENST00000575976 DDX60LQ5H9U9 1706 aaKnown RBP10.21□□□□□ -0.78
NUP88-211ENST00000575976 NAV1Q8NEY1 1877 aa10.21□□□□□ -0.78
NUP88-211ENST00000575976 PHF20L1A8MW92 1017 aa10.2□□□□□ -0.78
NUP88-211ENST00000575976 ZMYM6O95789 1325 aa10.2□□□□□ -0.78
NUP88-211ENST00000575976 MYH1P12882 1939 aa10.2□□□□□ -0.78
NUP88-211ENST00000575976 INPP5BP32019 993 aa10.2□□□□□ -0.78
NUP88-211ENST00000575976 HAND2P61296 217 aa10.2□□□□□ -0.78
NUP88-211ENST00000575976 FKBP1BP68106 108 aa10.2□□□□□ -0.78
NUP88-211ENST00000575976 CTDSPL2Q05D32 466 aa10.2□□□□□ -0.78
NUP88-211ENST00000575976 RRP1BQ14684 758 aaKnown RBP10.2□□□□□ -0.78
NUP88-211ENST00000575976 MAP3K11Q16584 847 aa10.2□□□□□ -0.78
NUP88-211ENST00000575976 SLC44A5Q8NCS7 719 aa10.2□□□□□ -0.78
NUP88-211ENST00000575976 DDX55Q8NHQ9 600 aaKnown RBP eCLIP10.2□□□□□ -0.78
NUP88-211ENST00000575976 TRIM34Q9BYJ4 488 aa10.2□□□□□ -0.78
NUP88-211ENST00000575976 BAZ2AQ9UIF9 1905 aaKnown RBP10.2□□□□□ -0.78
NUP88-211ENST00000575976 HERC5Q9UII4 1024 aaKnown RBP10.2□□□□□ -0.78
NUP88-211ENST00000575976 ZNF112Q9UJU3 913 aa10.2□□□□□ -0.78
NUP88-211ENST00000575976 RBM8AQ9Y5S9 174 aaKnown RBP10.2□□□□□ -0.78
NUP88-211ENST00000575976 U3KPZ7 1027 aaPredicted RBP10.2□□□□□ -0.78
NUP88-211ENST00000575976 SIPA1L1O43166 1804 aa10.19□□□□□ -0.78
NUP88-211ENST00000575976 RASSF10A6NK89 507 aa10.19□□□□□ -0.78
NUP88-211ENST00000575976 ZNF213O14771 459 aa10.19□□□□□ -0.78
NUP88-211ENST00000575976 SHMT1P34896 483 aa10.19□□□□□ -0.78
NUP88-211ENST00000575976 IREB2P48200 963 aaKnown RBP10.19□□□□□ -0.78
NUP88-211ENST00000575976 CDK8P49336 464 aa10.19□□□□□ -0.78
NUP88-211ENST00000575976 MAP3K9P80192 1104 aa10.19□□□□□ -0.78
NUP88-211ENST00000575976 C8orf34Q49A92 452 aa10.19□□□□□ -0.78
NUP88-211ENST00000575976 LDLRAD1Q5T700 205 aa10.19□□□□□ -0.78
NUP88-211ENST00000575976 TATDN1Q6P1N9 297 aa10.19□□□□□ -0.78
NUP88-211ENST00000575976 PPP1R3FQ6ZSY5 799 aaPredicted RBP10.19□□□□□ -0.78
NUP88-211ENST00000575976 C16orf86Q6ZW13 317 aa10.19□□□□□ -0.78
NUP88-211ENST00000575976 WRNIP1Q96S55 665 aa10.19□□□□□ -0.78
NUP88-211ENST00000575976 INCENPQ9NQS7 918 aa10.19□□□□□ -0.78
NUP88-211ENST00000575976 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.19□□□□□ -0.78
NUP88-211ENST00000575976 SWAP70Q9UH65 585 aa10.19□□□□□ -0.78
NUP88-211ENST00000575976 CTNNA3Q9UI47 895 aa10.19□□□□□ -0.78
NUP88-211ENST00000575976 ANAPC4Q9UJX5 808 aa10.19□□□□□ -0.78
NUP88-211ENST00000575976 TACC3Q9Y6A5 838 aa10.19□□□□□ -0.78
NUP88-211ENST00000575976 TLL2Q9Y6L7 1015 aa10.19□□□□□ -0.78
NUP88-211ENST00000575976 ROBO3Q96MS0 1386 aa10.18□□□□□ -0.78
NUP88-211ENST00000575976 WDR33Q9C0J8 1336 aaKnown RBP10.18□□□□□ -0.78
NUP88-211ENST00000575976 SEC24BO95487 1268 aa10.18□□□□□ -0.78
NUP88-211ENST00000575976 HUNKP57058 714 aa10.18□□□□□ -0.78
NUP88-211ENST00000575976 JAG1P78504 1218 aa10.18□□□□□ -0.78
NUP88-211ENST00000575976 NECTIN1Q15223 517 aa10.18□□□□□ -0.78
NUP88-211ENST00000575976 IMMTQ16891 758 aaKnown RBP10.18□□□□□ -0.78
NUP88-211ENST00000575976 SAPCD2Q86UD0 394 aa10.18□□□□□ -0.78
NUP88-211ENST00000575976 ANKRD13AQ8IZ07 590 aa10.18□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms