RNA–Protein interactions for RNA: ENST00000575513.1

CIITA-210, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 516 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-210ENST00000575513 SNAPC2Q13487 334 aa16.39■□□□□ 0.21
CIITA-210ENST00000575513 COL13A1Q5TAT6 717 aaPredicted RBP16.39■□□□□ 0.21
CIITA-210ENST00000575513 TSHZ3Q63HK5 1081 aa16.39■□□□□ 0.21
CIITA-210ENST00000575513 CNKSR2Q8WXI2 1034 aa16.39■□□□□ 0.21
CIITA-210ENST00000575513 OTUD5Q96G74 571 aa16.39■□□□□ 0.21
CIITA-210ENST00000575513 PICK1Q9NRD5 415 aa16.39■□□□□ 0.21
CIITA-210ENST00000575513 GINM1Q9NU53 330 aa16.39■□□□□ 0.21
CIITA-210ENST00000575513 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.39■□□□□ 0.21
CIITA-210ENST00000575513 PALD1Q9ULE6 856 aa16.39■□□□□ 0.21
CIITA-210ENST00000575513 KCNH4Q9UQ05 1017 aa16.39■□□□□ 0.21
CIITA-210ENST00000575513 MYO5AQ9Y4I1 1855 aaKnown RBP16.39■□□□□ 0.21
CIITA-210ENST00000575513 CXCL11O14625 94 aa16.38■□□□□ 0.21
CIITA-210ENST00000575513 CETPP11597 493 aa16.38■□□□□ 0.21
CIITA-210ENST00000575513 PDE1AP54750 535 aa16.38■□□□□ 0.21
CIITA-210ENST00000575513 TTC6Q86TZ1 520 aa16.38■□□□□ 0.21
CIITA-210ENST00000575513 CHD1LQ86WJ1 897 aa16.38■□□□□ 0.21
CIITA-210ENST00000575513 TBC1D2Q9BYX2 928 aa16.38■□□□□ 0.21
CIITA-210ENST00000575513 EHD4Q9H223 541 aa16.38■□□□□ 0.21
CIITA-210ENST00000575513 ZCCHC17Q9NP64 241 aaKnown RBP16.38■□□□□ 0.21
CIITA-210ENST00000575513 RNF113AO15541 343 aaKnown RBP16.37■□□□□ 0.21
CIITA-210ENST00000575513 PTPRAP18433 802 aa16.37■□□□□ 0.21
CIITA-210ENST00000575513 PTPN18Q99952 460 aa16.37■□□□□ 0.21
CIITA-210ENST00000575513 ATP8A2Q9NTI2 1148 aa16.37■□□□□ 0.21
CIITA-210ENST00000575513 AK9Q5TCS8 1911 aa16.37■□□□□ 0.21
CIITA-210ENST00000575513 CCL15-CCL14A0A0B4J2E2 113 aa16.36■□□□□ 0.21
CIITA-210ENST00000575513 IGF2BP3O00425 579 aaKnown RBP eCLIP16.36■□□□□ 0.21
CIITA-210ENST00000575513 CAP2P40123 477 aa16.36■□□□□ 0.21
CIITA-210ENST00000575513 CCL15Q16663 113 aa16.36■□□□□ 0.21
CIITA-210ENST00000575513 LCORLQ8N3X6 602 aa16.36■□□□□ 0.21
CIITA-210ENST00000575513 CRACR2BQ8N4Y2 399 aaPredicted RBP16.36■□□□□ 0.21
CIITA-210ENST00000575513 BRI3BPQ8WY22 251 aa16.36■□□□□ 0.21
CIITA-210ENST00000575513 TRIM34Q9BYJ4 488 aa16.36■□□□□ 0.21
CIITA-210ENST00000575513 LNPKQ9C0E8 428 aa16.36■□□□□ 0.21
CIITA-210ENST00000575513 OSBPL3Q9H4L5 887 aa16.36■□□□□ 0.21
CIITA-210ENST00000575513 ARMT1Q9H993 441 aa16.36■□□□□ 0.21
CIITA-210ENST00000575513 DCP1AQ9NPI6 582 aaPredicted RBP16.36■□□□□ 0.21
CIITA-210ENST00000575513 TSKSQ9UJT2 592 aa16.36■□□□□ 0.21
CIITA-210ENST00000575513 ZHX2Q9Y6X8 837 aa16.36■□□□□ 0.21
CIITA-210ENST00000575513 OTOFQ9HC10 1997 aa16.36■□□□□ 0.21
CIITA-210ENST00000575513 MBD4O95243 580 aa16.35■□□□□ 0.21
CIITA-210ENST00000575513 B4GALNT3Q6L9W6 998 aa16.35■□□□□ 0.21
CIITA-210ENST00000575513 APPBP2Q92624 585 aa16.35■□□□□ 0.21
CIITA-210ENST00000575513 EVI5LQ96CN4 794 aa16.35■□□□□ 0.21
CIITA-210ENST00000575513 PUS7LQ9H0K6 701 aaKnown RBP16.35■□□□□ 0.21
CIITA-210ENST00000575513 SAP30BPQ9UHR5 308 aaKnown RBP16.35■□□□□ 0.21
CIITA-210ENST00000575513 SERPINB13Q9UIV8 391 aa16.35■□□□□ 0.21
CIITA-210ENST00000575513 AFG3L2Q9Y4W6 797 aa16.35■□□□□ 0.21
CIITA-210ENST00000575513 LAMB1P07942 1786 aa16.34■□□□□ 0.21
CIITA-210ENST00000575513 TBC1D8O95759 1140 aa16.34■□□□□ 0.21
CIITA-210ENST00000575513 POLR3DP05423 398 aaPredicted RBP16.34■□□□□ 0.21
CIITA-210ENST00000575513 ASNSP08243 561 aa16.34■□□□□ 0.21
CIITA-210ENST00000575513 SLURP2P0DP57 97 aa16.34■□□□□ 0.21
CIITA-210ENST00000575513 SLFNL1Q499Z3 407 aa16.34■□□□□ 0.21
CIITA-210ENST00000575513 TATDN1Q6P1N9 297 aa16.34■□□□□ 0.21
CIITA-210ENST00000575513 GIMAP6Q6P9H5 292 aa16.34■□□□□ 0.21
CIITA-210ENST00000575513 DDRGK1Q96HY6 314 aa16.34■□□□□ 0.21
CIITA-210ENST00000575513 STRBPQ96SI9 672 aaKnown RBP16.34■□□□□ 0.21
CIITA-210ENST00000575513 DNAJC18Q9H819 358 aa16.34■□□□□ 0.21
CIITA-210ENST00000575513 MCM9Q9NXL9 1143 aa16.34■□□□□ 0.21
CIITA-210ENST00000575513 FAM196BA6NMK8 535 aa16.33■□□□□ 0.2
CIITA-210ENST00000575513 GNAT2P19087 354 aa16.33■□□□□ 0.2
CIITA-210ENST00000575513 FASTKD5Q7L8L6 764 aaKnown RBP16.33■□□□□ 0.2
CIITA-210ENST00000575513 ANKRD23Q86SG2 305 aa16.33■□□□□ 0.2
CIITA-210ENST00000575513 SDR42E1Q8WUS8 393 aa16.33■□□□□ 0.2
CIITA-210ENST00000575513 OSBP2Q969R2 916 aa16.33■□□□□ 0.2
CIITA-210ENST00000575513 FOCADQ5VW36 1801 aa16.33■□□□□ 0.2
CIITA-210ENST00000575513 A0A0G2JLL6 359 aaPredicted RBP16.32■□□□□ 0.2
CIITA-210ENST00000575513 USP17L5A8MUK1 530 aa16.32■□□□□ 0.2
CIITA-210ENST00000575513 GPR25O00155 361 aa16.32■□□□□ 0.2
CIITA-210ENST00000575513 CHGBP05060 677 aa16.32■□□□□ 0.2
CIITA-210ENST00000575513 PLCD1P51178 756 aa16.32■□□□□ 0.2
CIITA-210ENST00000575513 GABPAQ06546 454 aa16.32■□□□□ 0.2
CIITA-210ENST00000575513 RRP1BQ14684 758 aaKnown RBP16.32■□□□□ 0.2
CIITA-210ENST00000575513 PRRT2Q7Z6L0 340 aaPredicted RBP16.32■□□□□ 0.2
CIITA-210ENST00000575513 PLEKHM2Q8IWE5 1019 aa16.32■□□□□ 0.2
CIITA-210ENST00000575513 FSD1Q9BTV5 496 aa16.32■□□□□ 0.2
CIITA-210ENST00000575513 SLC4A4Q9Y6R1 1079 aa16.32■□□□□ 0.2
CIITA-210ENST00000575513 BTBD19C9JJ37 291 aa16.31■□□□□ 0.2
CIITA-210ENST00000575513 PRKAB2O43741 272 aa16.31■□□□□ 0.2
CIITA-210ENST00000575513 MOGSQ13724 837 aa16.31■□□□□ 0.2
CIITA-210ENST00000575513 ZMYM1Q5SVZ6 1142 aa16.31■□□□□ 0.2
CIITA-210ENST00000575513 AMOTL1Q8IY63 956 aa16.31■□□□□ 0.2
CIITA-210ENST00000575513 FAM43AQ8N2R8 423 aa16.31■□□□□ 0.2
CIITA-210ENST00000575513 ZNF280CQ8ND82 737 aa16.31■□□□□ 0.2
CIITA-210ENST00000575513 WDR18Q9BV38 432 aa16.31■□□□□ 0.2
CIITA-210ENST00000575513 AS3MTQ9HBK9 375 aa16.31■□□□□ 0.2
CIITA-210ENST00000575513 ZFYVE28Q9HCC9 887 aa16.31■□□□□ 0.2
CIITA-210ENST00000575513 SWAP70Q9UH65 585 aa16.31■□□□□ 0.2
CIITA-210ENST00000575513 SLC45A1Q9Y2W3 748 aa16.31■□□□□ 0.2
CIITA-210ENST00000575513 NEFLP07196 543 aa16.3■□□□□ 0.2
CIITA-210ENST00000575513 CRHR2Q13324 411 aa16.3■□□□□ 0.2
CIITA-210ENST00000575513 C12orf60Q5U649 245 aa16.3■□□□□ 0.2
CIITA-210ENST00000575513 TNS4Q8IZW8 715 aa16.3■□□□□ 0.2
CIITA-210ENST00000575513 ZNF296Q8WUU4 475 aaPredicted RBP16.3■□□□□ 0.2
CIITA-210ENST00000575513 R3HDMLQ9H3Y0 253 aa16.3■□□□□ 0.2
CIITA-210ENST00000575513 CDK5RAP2Q96SN8 1893 aa16.3■□□□□ 0.2
CIITA-210ENST00000575513 GSG1L2A8MUP6 293 aa16.29■□□□□ 0.2
CIITA-210ENST00000575513 PATL2C9JE40 543 aaKnown RBP16.29■□□□□ 0.2
CIITA-210ENST00000575513 USP17L12C9JPN9 530 aa16.29■□□□□ 0.2
CIITA-210ENST00000575513 USP17L21D6R901 530 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms