RNA–Protein interactions for RNA: ENST00000568691.5

VPS9D1-207, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 838 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-207ENST00000568691 MAST2Q6P0Q8 1798 aa14.88□□□□□ -0.03
VPS9D1-207ENST00000568691 TNFRSF10AO00220 468 aa14.87□□□□□ -0.03
VPS9D1-207ENST00000568691 FRAT2O75474 233 aaPredicted RBP14.87□□□□□ -0.03
VPS9D1-207ENST00000568691 CYP2B6P20813 491 aa14.87□□□□□ -0.03
VPS9D1-207ENST00000568691 CCL14Q16627 93 aa14.87□□□□□ -0.03
VPS9D1-207ENST00000568691 POTEEQ6S8J3 1075 aa14.87□□□□□ -0.03
VPS9D1-207ENST00000568691 USP6NLQ92738 828 aa14.87□□□□□ -0.03
VPS9D1-207ENST00000568691 DDX4Q9NQI0 724 aaKnown RBP14.87□□□□□ -0.03
VPS9D1-207ENST00000568691 USP40Q9NVE5 1235 aa14.87□□□□□ -0.03
VPS9D1-207ENST00000568691 LTBP2Q14767 1821 aa14.87□□□□□ -0.03
VPS9D1-207ENST00000568691 PDE8BO95263 885 aa14.86□□□□□ -0.03
VPS9D1-207ENST00000568691 RGS3P49796 1198 aa14.86□□□□□ -0.03
VPS9D1-207ENST00000568691 RRP1BQ14684 758 aaKnown RBP14.86□□□□□ -0.03
VPS9D1-207ENST00000568691 CAVIN4Q5BKX8 364 aa14.86□□□□□ -0.03
VPS9D1-207ENST00000568691 ASCC2Q9H1I8 757 aaPredicted RBP14.86□□□□□ -0.03
VPS9D1-207ENST00000568691 TXNRD2Q9NNW7 524 aa14.86□□□□□ -0.03
VPS9D1-207ENST00000568691 MORF4L1Q9UBU8 362 aa14.86□□□□□ -0.03
VPS9D1-207ENST00000568691 DOCK1Q14185 1865 aa14.86□□□□□ -0.03
VPS9D1-207ENST00000568691 LOC285556D6RIA3 1793 aa14.85□□□□□ -0.03
VPS9D1-207ENST00000568691 DOCK2Q92608 1830 aa14.85□□□□□ -0.03
VPS9D1-207ENST00000568691 CTNND1O60716 968 aaKnown RBP14.85□□□□□ -0.03
VPS9D1-207ENST00000568691 HOXD11P31277 338 aaPredicted RBP14.85□□□□□ -0.03
VPS9D1-207ENST00000568691 ANKRD44Q8N8A2 993 aa14.85□□□□□ -0.03
VPS9D1-207ENST00000568691 KLHDC4Q8TBB5 520 aa14.85□□□□□ -0.03
VPS9D1-207ENST00000568691 SYMPKQ92797 1274 aaKnown RBP14.85□□□□□ -0.03
VPS9D1-207ENST00000568691 IDI2Q9BXS1 227 aa14.85□□□□□ -0.03
VPS9D1-207ENST00000568691 AK9Q5TCS8 1911 aa14.84□□□□□ -0.03
VPS9D1-207ENST00000568691 VAMP4O75379 141 aa14.84□□□□□ -0.03
VPS9D1-207ENST00000568691 XRCC5P13010 732 aaKnown RBP14.84□□□□□ -0.03
VPS9D1-207ENST00000568691 FOSL2P15408 326 aa14.84□□□□□ -0.03
VPS9D1-207ENST00000568691 GCLCP48506 637 aaPredicted RBP14.84□□□□□ -0.03
VPS9D1-207ENST00000568691 TJAP1Q5JTD0 557 aa14.84□□□□□ -0.03
VPS9D1-207ENST00000568691 METTL24Q5JXM2 366 aa14.84□□□□□ -0.03
VPS9D1-207ENST00000568691 PROCA1Q8NCQ7 364 aaPredicted RBP14.84□□□□□ -0.03
VPS9D1-207ENST00000568691 BDP1A6H8Y1 2624 aa14.83□□□□□ -0.03
VPS9D1-207ENST00000568691 FAM196BA6NMK8 535 aa14.83□□□□□ -0.04
VPS9D1-207ENST00000568691 ENTPD3O75355 529 aa14.83□□□□□ -0.04
VPS9D1-207ENST00000568691 NBPF7P0C2Y1 421 aaPredicted RBP14.83□□□□□ -0.04
VPS9D1-207ENST00000568691 SPP2Q13103 211 aa14.83□□□□□ -0.04
VPS9D1-207ENST00000568691 RABL6Q3YEC7 729 aaPredicted RBP14.83□□□□□ -0.04
VPS9D1-207ENST00000568691 KIF16BQ96L93 1317 aa14.83□□□□□ -0.04
VPS9D1-207ENST00000568691 ATN1P54259 1190 aaPredicted RBP14.82□□□□□ -0.04
VPS9D1-207ENST00000568691 HMGCS2P54868 508 aa14.82□□□□□ -0.04
VPS9D1-207ENST00000568691 SMAD3P84022 425 aaKnown RBP14.82□□□□□ -0.04
VPS9D1-207ENST00000568691 Q3C1V9 767 aa14.82□□□□□ -0.04
VPS9D1-207ENST00000568691 WDR66Q8TBY9 1149 aa14.82□□□□□ -0.04
VPS9D1-207ENST00000568691 LBHD1Q9BQE6 289 aaPredicted RBP14.82□□□□□ -0.04
VPS9D1-207ENST00000568691 SENP6Q9GZR1 1112 aaPredicted RBP14.82□□□□□ -0.04
VPS9D1-207ENST00000568691 BICC1Q9H694 974 aaKnown RBP14.82□□□□□ -0.04
VPS9D1-207ENST00000568691 PNMA3Q9UL41 463 aa14.82□□□□□ -0.04
VPS9D1-207ENST00000568691 LRRFIP2Q9Y608 721 aaKnown RBP14.82□□□□□ -0.04
VPS9D1-207ENST00000568691 GRIN2CQ14957 1233 aa14.81□□□□□ -0.04
VPS9D1-207ENST00000568691 MORN1Q5T089 497 aa14.81□□□□□ -0.04
VPS9D1-207ENST00000568691 PORCNQ9H237 461 aa14.81□□□□□ -0.04
VPS9D1-207ENST00000568691 FLRT1Q9NZU1 646 aa14.81□□□□□ -0.04
VPS9D1-207ENST00000568691 UTYO14607 1347 aa14.81□□□□□ -0.04
VPS9D1-207ENST00000568691 GAKO14976 1311 aa14.81□□□□□ -0.04
VPS9D1-207ENST00000568691 FRMPD3Q5JV73 1810 aa14.8□□□□□ -0.04
VPS9D1-207ENST00000568691 NCOR1O75376 2440 aa14.8□□□□□ -0.04
VPS9D1-207ENST00000568691 RARSP54136 660 aaKnown RBP14.8□□□□□ -0.04
VPS9D1-207ENST00000568691 RTP1P59025 263 aa14.8□□□□□ -0.04
VPS9D1-207ENST00000568691 ALDH1L2Q3SY69 923 aa14.8□□□□□ -0.04
VPS9D1-207ENST00000568691 SH3D19Q5HYK7 790 aa14.8□□□□□ -0.04
VPS9D1-207ENST00000568691 FAM122AQ96E09 287 aa14.8□□□□□ -0.04
VPS9D1-207ENST00000568691 P2RX7Q99572 595 aaKnown RBP14.8□□□□□ -0.04
VPS9D1-207ENST00000568691 NUDT12Q9BQG2 462 aa14.8□□□□□ -0.04
VPS9D1-207ENST00000568691 C9orf78Q9NZ63 289 aaPredicted RBP14.8□□□□□ -0.04
VPS9D1-207ENST00000568691 RBPJLQ9UBG7 517 aa14.8□□□□□ -0.04
VPS9D1-207ENST00000568691 ALDH1L1O75891 902 aa14.79□□□□□ -0.04
VPS9D1-207ENST00000568691 ZKSCAN1P17029 563 aaPredicted RBP14.79□□□□□ -0.04
VPS9D1-207ENST00000568691 EPHB4P54760 987 aa14.79□□□□□ -0.04
VPS9D1-207ENST00000568691 JAG1P78504 1218 aa14.79□□□□□ -0.04
VPS9D1-207ENST00000568691 PUM3Q15397 648 aaKnown RBP14.79□□□□□ -0.04
VPS9D1-207ENST00000568691 SH3RF1Q7Z6J0 888 aa14.79□□□□□ -0.04
VPS9D1-207ENST00000568691 ZNF280CQ8ND82 737 aa14.79□□□□□ -0.04
VPS9D1-207ENST00000568691 BADQ92934 168 aa14.79□□□□□ -0.04
VPS9D1-207ENST00000568691 PPP4R2Q9NY27 417 aa14.79□□□□□ -0.04
VPS9D1-207ENST00000568691 CHD9Q3L8U1 2897 aa14.78□□□□□ -0.04
VPS9D1-207ENST00000568691 SALL1Q9NSC2 1324 aa14.78□□□□□ -0.04
VPS9D1-207ENST00000568691 TMEM265A0A087WTH1 108 aa14.78□□□□□ -0.04
VPS9D1-207ENST00000568691 TRIM43BA6NCK2 446 aa14.78□□□□□ -0.04
VPS9D1-207ENST00000568691 TBC1D12O60347 775 aa14.78□□□□□ -0.04
VPS9D1-207ENST00000568691 IGHA2P01877 340 aa14.78□□□□□ -0.04
VPS9D1-207ENST00000568691 LDHBP07195 334 aaKnown RBP14.78□□□□□ -0.04
VPS9D1-207ENST00000568691 ITGB8P26012 769 aa14.78□□□□□ -0.04
VPS9D1-207ENST00000568691 RHBDL3P58872 404 aa14.78□□□□□ -0.04
VPS9D1-207ENST00000568691 EXOSC9Q06265 439 aaKnown RBP14.78□□□□□ -0.04
VPS9D1-207ENST00000568691 MAP3K12Q12852 859 aa14.78□□□□□ -0.04
VPS9D1-207ENST00000568691 TRPV1Q8NER1 839 aa14.78□□□□□ -0.04
VPS9D1-207ENST00000568691 ZNF384Q8TF68 577 aa14.78□□□□□ -0.04
VPS9D1-207ENST00000568691 SOCS4Q8WXH5 440 aa14.78□□□□□ -0.04
VPS9D1-207ENST00000568691 TRIM43Q96BQ3 446 aaPredicted RBP14.78□□□□□ -0.04
VPS9D1-207ENST00000568691 IFIT1P09914 478 aaKnown RBP14.77□□□□□ -0.05
VPS9D1-207ENST00000568691 RFX5P48382 616 aaPredicted RBP14.77□□□□□ -0.05
VPS9D1-207ENST00000568691 PDE3AQ14432 1141 aa14.77□□□□□ -0.05
VPS9D1-207ENST00000568691 SHROOM1Q2M3G4 852 aaPredicted RBP14.77□□□□□ -0.05
VPS9D1-207ENST00000568691 GPR142Q7Z601 462 aa14.77□□□□□ -0.05
VPS9D1-207ENST00000568691 ZSCAN29Q8IWY8 852 aaPredicted RBP14.77□□□□□ -0.05
VPS9D1-207ENST00000568691 MS4A1P11836 297 aa14.76□□□□□ -0.05
VPS9D1-207ENST00000568691 HOXA7P31268 230 aaPredicted RBP14.76□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms