RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 HDXQ7Z353 690 aa4.38□□□□□ -1.71
VPS35-208ENST00000568612 TEX2Q8IWB9 1127 aa4.38□□□□□ -1.71
VPS35-208ENST00000568612 RNF214Q8ND24 703 aa4.38□□□□□ -1.71
VPS35-208ENST00000568612 JARID2Q92833 1246 aaPredicted RBP4.38□□□□□ -1.71
VPS35-208ENST00000568612 PLPPR2Q96GM1 343 aa4.38□□□□□ -1.71
VPS35-208ENST00000568612 MIR1-1HGQ9H1L0 117 aa4.38□□□□□ -1.71
VPS35-208ENST00000568612 C1GALT1Q9NS00 363 aa4.38□□□□□ -1.71
VPS35-208ENST00000568612 TLR6Q9Y2C9 796 aa4.38□□□□□ -1.71
VPS35-208ENST00000568612 PCDHB5Q9Y5E4 795 aa4.38□□□□□ -1.71
VPS35-208ENST00000568612 HMGB1P09429 215 aaKnown RBP4.37□□□□□ -1.71
VPS35-208ENST00000568612 RLBP1P12271 317 aa4.37□□□□□ -1.71
VPS35-208ENST00000568612 ST13P50502 369 aaKnown RBP4.37□□□□□ -1.71
VPS35-208ENST00000568612 ETF1P62495 437 aaKnown RBP4.37□□□□□ -1.71
VPS35-208ENST00000568612 INPP5AQ14642 412 aa4.37□□□□□ -1.71
VPS35-208ENST00000568612 CYP27C1Q4G0S4 372 aa4.37□□□□□ -1.71
VPS35-208ENST00000568612 WIPI1Q5MNZ9 446 aaPredicted RBP4.37□□□□□ -1.71
VPS35-208ENST00000568612 XP32Q5T750 250 aa4.37□□□□□ -1.71
VPS35-208ENST00000568612 PDZRN4Q6ZMN7 1036 aaPredicted RBP4.37□□□□□ -1.71
VPS35-208ENST00000568612 TOP6BLQ8N6T0 577 aa4.37□□□□□ -1.71
VPS35-208ENST00000568612 GAL3ST3Q96A11 431 aa4.37□□□□□ -1.71
VPS35-208ENST00000568612 FANCGO15287 622 aa4.36□□□□□ -1.71
VPS35-208ENST00000568612 FOSL1P15407 271 aa4.36□□□□□ -1.71
VPS35-208ENST00000568612 TFE3P19532 575 aaPredicted RBP4.36□□□□□ -1.71
VPS35-208ENST00000568612 CDK8P49336 464 aa4.36□□□□□ -1.71
VPS35-208ENST00000568612 RPS26P62854 115 aaKnown RBP4.36□□□□□ -1.71
VPS35-208ENST00000568612 ZBTB37Q5TC79 503 aa4.36□□□□□ -1.71
VPS35-208ENST00000568612 SCARA3Q6AZY7 606 aa4.36□□□□□ -1.71
VPS35-208ENST00000568612 OGFOD3Q6PK18 319 aa4.36□□□□□ -1.71
VPS35-208ENST00000568612 SEZ6L2Q6UXD5 910 aa4.36□□□□□ -1.71
VPS35-208ENST00000568612 AGMOQ6ZNB7 445 aa4.36□□□□□ -1.71
VPS35-208ENST00000568612 RELL1Q8IUW5 271 aa4.36□□□□□ -1.71
VPS35-208ENST00000568612 ZNF507Q8TCN5 953 aa4.36□□□□□ -1.71
VPS35-208ENST00000568612 GATA6Q92908 595 aa4.36□□□□□ -1.71
VPS35-208ENST00000568612 NOC4LQ9BVI4 516 aaKnown RBP4.36□□□□□ -1.71
VPS35-208ENST00000568612 ANGEL1Q9UNK9 670 aaKnown RBP4.36□□□□□ -1.71
VPS35-208ENST00000568612 USP31Q70CQ4 1352 aa4.36□□□□□ -1.71
VPS35-208ENST00000568612 MINDY4BA8MYZ0 360 aa4.35□□□□□ -1.71
VPS35-208ENST00000568612 RRP9O43818 475 aaKnown RBP4.35□□□□□ -1.71
VPS35-208ENST00000568612 LEFTY1O75610 366 aa4.35□□□□□ -1.71
VPS35-208ENST00000568612 BPNT1O95861 308 aa4.35□□□□□ -1.71
VPS35-208ENST00000568612 GBP2P32456 591 aaPredicted RBP4.35□□□□□ -1.71
VPS35-208ENST00000568612 CPSF6Q16630 551 aaKnown RBP eCLIP4.35□□□□□ -1.71
VPS35-208ENST00000568612 UBE3DQ7Z6J8 389 aa4.35□□□□□ -1.71
VPS35-208ENST00000568612 FAM181AQ8N9Y4 354 aa4.35□□□□□ -1.71
VPS35-208ENST00000568612 KCT2Q8NC54 265 aa4.35□□□□□ -1.71
VPS35-208ENST00000568612 CACNA2D2Q9NY47 1150 aa4.35□□□□□ -1.71
VPS35-208ENST00000568612 KIAA1324LA8MWY0 1029 aaPredicted RBP4.34□□□□□ -1.71
VPS35-208ENST00000568612 WNT11O96014 354 aa4.34□□□□□ -1.71
VPS35-208ENST00000568612 PF4P02776 101 aa4.34□□□□□ -1.71
VPS35-208ENST00000568612 ZNF16P17020 682 aaPredicted RBP4.34□□□□□ -1.71
VPS35-208ENST00000568612 ITIH2P19823 946 aa4.34□□□□□ -1.71
VPS35-208ENST00000568612 GRK4P32298 578 aa4.34□□□□□ -1.71
VPS35-208ENST00000568612 FAM160A1Q05DH4 1040 aa4.34□□□□□ -1.71
VPS35-208ENST00000568612 CAMK2GQ13555 558 aaPredicted RBP4.34□□□□□ -1.71
VPS35-208ENST00000568612 TSNAXIP1Q2TAA8 658 aa4.34□□□□□ -1.71
VPS35-208ENST00000568612 SNAP47Q5SQN1 464 aa4.34□□□□□ -1.71
VPS35-208ENST00000568612 ARMCX6Q7L4S7 300 aa4.34□□□□□ -1.71
VPS35-208ENST00000568612 PHC3Q8NDX5 983 aa4.34□□□□□ -1.71
VPS35-208ENST00000568612 XAGE3Q8WTP9 111 aa4.34□□□□□ -1.71
VPS35-208ENST00000568612 DUSP23Q9BVJ7 150 aa4.34□□□□□ -1.71
VPS35-208ENST00000568612 WNT10AQ9GZT5 417 aa4.34□□□□□ -1.71
VPS35-208ENST00000568612 SNCAIPQ9Y6H5 919 aa4.34□□□□□ -1.71
VPS35-208ENST00000568612 ARID4BQ4LE39 1312 aaPredicted RBP4.33□□□□□ -1.72
VPS35-208ENST00000568612 PGRP06401 933 aa4.33□□□□□ -1.72
VPS35-208ENST00000568612 SPINK2P20155 84 aa4.33□□□□□ -1.72
VPS35-208ENST00000568612 NTF4P34130 210 aa4.33□□□□□ -1.72
VPS35-208ENST00000568612 CALD1Q05682 793 aaKnown RBP4.33□□□□□ -1.72
VPS35-208ENST00000568612 PWP1Q13610 501 aa4.33□□□□□ -1.72
VPS35-208ENST00000568612 BNC2Q6ZN30 1099 aaPredicted RBP4.33□□□□□ -1.72
VPS35-208ENST00000568612 CYFIP1Q7L576 1253 aa4.33□□□□□ -1.72
VPS35-208ENST00000568612 DTX1Q86Y01 620 aa4.33□□□□□ -1.72
VPS35-208ENST00000568612 TMEM87AQ8NBN3 555 aa4.33□□□□□ -1.72
VPS35-208ENST00000568612 YTHDC1Q96MU7 727 aaKnown RBP4.33□□□□□ -1.72
VPS35-208ENST00000568612 MIPEPQ99797 713 aa4.33□□□□□ -1.72
VPS35-208ENST00000568612 CHMP4BQ9H444 224 aaKnown RBP4.33□□□□□ -1.72
VPS35-208ENST00000568612 FBRSQ9HAH7 460 aa4.33□□□□□ -1.72
VPS35-208ENST00000568612 PRDM10Q9NQV6 1147 aa4.33□□□□□ -1.72
VPS35-208ENST00000568612 ZC3H7BQ9UGR2 993 aaKnown RBP4.33□□□□□ -1.72
VPS35-208ENST00000568612 GGT7Q9UJ14 662 aa4.33□□□□□ -1.72
VPS35-208ENST00000568612 TPX2Q9ULW0 747 aaKnown RBP4.33□□□□□ -1.72
VPS35-208ENST00000568612 CENPJQ9HC77 1338 aaPredicted RBP4.32□□□□□ -1.72
VPS35-208ENST00000568612 LRIG2O94898 1065 aa4.32□□□□□ -1.72
VPS35-208ENST00000568612 NCLP19338 710 aaKnown RBP4.32□□□□□ -1.72
VPS35-208ENST00000568612 GP2P55259 537 aaKnown RBP4.32□□□□□ -1.72
VPS35-208ENST00000568612 RPL6Q02878 288 aaKnown RBP4.32□□□□□ -1.72
VPS35-208ENST00000568612 RING1Q06587 406 aa4.32□□□□□ -1.72
VPS35-208ENST00000568612 PDE4BQ07343 736 aa4.32□□□□□ -1.72
VPS35-208ENST00000568612 MSMPQ1L6U9 139 aa4.32□□□□□ -1.72
VPS35-208ENST00000568612 TICAM2Q86XR7 235 aa4.32□□□□□ -1.72
VPS35-208ENST00000568612 HID1Q8IV36 788 aa4.32□□□□□ -1.72
VPS35-208ENST00000568612 TP53INP2Q8IXH6 220 aa4.32□□□□□ -1.72
VPS35-208ENST00000568612 PLD6Q8N2A8 252 aaKnown RBP4.32□□□□□ -1.72
VPS35-208ENST00000568612 GOLM1Q8NBJ4 401 aa4.32□□□□□ -1.72
VPS35-208ENST00000568612 FLCNQ8NFG4 579 aa4.32□□□□□ -1.72
VPS35-208ENST00000568612 TMEM74Q96NL1 305 aa4.32□□□□□ -1.72
VPS35-208ENST00000568612 DPH2Q9BQC3 489 aaPredicted RBP4.32□□□□□ -1.72
VPS35-208ENST00000568612 FOXQ1Q9C009 403 aa4.32□□□□□ -1.72
VPS35-208ENST00000568612 COPRSQ9NQ92 184 aa4.32□□□□□ -1.72
VPS35-208ENST00000568612 KBTBD4Q9NVX7 518 aa4.32□□□□□ -1.72
VPS35-208ENST00000568612 BSDC1Q9NW68 430 aaPredicted RBP4.32□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms