RNA–Protein interactions for RNA: ENST00000568452.6

CLN3-233, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,616 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-233ENST00000568452 USP40Q9NVE5 1235 aa22.3■■□□□ 1.16
CLN3-233ENST00000568452 ZNRF3Q9ULT6 936 aa22.3■■□□□ 1.16
CLN3-233ENST00000568452 BCS1LQ9Y276 419 aa22.3■■□□□ 1.16
CLN3-233ENST00000568452 RANBP6O60518 1105 aaKnown RBP22.29■■□□□ 1.16
CLN3-233ENST00000568452 CCT2P78371 535 aaKnown RBP22.29■■□□□ 1.16
CLN3-233ENST00000568452 APOBEC3HQ6NTF7 200 aaKnown RBP22.29■■□□□ 1.16
CLN3-233ENST00000568452 RSBN1LQ6PCB5 846 aaPredicted RBP22.29■■□□□ 1.16
CLN3-233ENST00000568452 SMARCC2Q8TAQ2 1214 aa22.29■■□□□ 1.16
CLN3-233ENST00000568452 ZDHHC9Q9Y397 364 aa22.29■■□□□ 1.16
CLN3-233ENST00000568452 CDK5RAP2Q96SN8 1893 aa22.29■■□□□ 1.16
CLN3-233ENST00000568452 SMIM22K7EJ46 135 aa22.28■■□□□ 1.16
CLN3-233ENST00000568452 STX6O43752 255 aa22.28■■□□□ 1.16
CLN3-233ENST00000568452 VIL1P09327 827 aaKnown RBP22.28■■□□□ 1.16
CLN3-233ENST00000568452 SYT1P21579 422 aa22.28■■□□□ 1.16
CLN3-233ENST00000568452 APOA5Q6Q788 366 aa22.28■■□□□ 1.16
CLN3-233ENST00000568452 FER1L6Q2WGJ9 1857 aa22.28■■□□□ 1.16
CLN3-233ENST00000568452 LTBP3Q9NS15 1303 aa22.28■■□□□ 1.16
CLN3-233ENST00000568452 FOCADQ5VW36 1801 aa22.28■■□□□ 1.16
CLN3-233ENST00000568452 MCM4P33991 863 aa22.28■■□□□ 1.16
CLN3-233ENST00000568452 RCAN1P53805 252 aa22.28■■□□□ 1.16
CLN3-233ENST00000568452 DDX60LQ5H9U9 1706 aaKnown RBP22.28■■□□□ 1.16
CLN3-233ENST00000568452 CDC42EP5Q6NZY7 148 aa22.28■■□□□ 1.16
CLN3-233ENST00000568452 ZSCAN10Q96SZ4 725 aaPredicted RBP22.28■■□□□ 1.16
CLN3-233ENST00000568452 SAP30BPQ9UHR5 308 aaKnown RBP22.28■■□□□ 1.16
CLN3-233ENST00000568452 SLC12A7Q9Y666 1083 aa22.28■■□□□ 1.16
CLN3-233ENST00000568452 ZBTB43O43298 467 aa22.27■■□□□ 1.16
CLN3-233ENST00000568452 PRDM1O75626 825 aa22.27■■□□□ 1.16
CLN3-233ENST00000568452 RBM5P52756 815 aaKnown RBP eCLIP22.27■■□□□ 1.16
CLN3-233ENST00000568452 LARP1BQ659C4 914 aaKnown RBP22.27■■□□□ 1.16
CLN3-233ENST00000568452 TTC6Q86TZ1 520 aa22.27■■□□□ 1.16
CLN3-233ENST00000568452 NSUN7Q8NE18 718 aaKnown RBP22.27■■□□□ 1.16
CLN3-233ENST00000568452 JDP2Q8WYK2 163 aa22.27■■□□□ 1.16
CLN3-233ENST00000568452 MKNK2Q9HBH9 465 aa22.27■■□□□ 1.16
CLN3-233ENST00000568452 HDAC9Q9UKV0 1011 aa22.27■■□□□ 1.16
CLN3-233ENST00000568452 HPS5Q9UPZ3 1129 aa22.27■■□□□ 1.16
CLN3-233ENST00000568452 DDX11L8A8MPP1 907 aa22.26■■□□□ 1.15
CLN3-233ENST00000568452 WDHD1O75717 1129 aaPredicted RBP22.26■■□□□ 1.15
CLN3-233ENST00000568452 METAP2P50579 478 aaKnown RBP eCLIP22.26■■□□□ 1.15
CLN3-233ENST00000568452 CPLX2Q6PUV4 134 aaKnown RBP22.26■■□□□ 1.15
CLN3-233ENST00000568452 FAM184AQ8NB25 1140 aa22.26■■□□□ 1.15
CLN3-233ENST00000568452 ZKSCAN3Q9BRR0 538 aa22.26■■□□□ 1.15
CLN3-233ENST00000568452 SYT17Q9BSW7 474 aa22.26■■□□□ 1.15
CLN3-233ENST00000568452 NCOA5Q9HCD5 579 aaKnown RBP22.26■■□□□ 1.15
CLN3-233ENST00000568452 TNKSO95271 1327 aa22.26■■□□□ 1.15
CLN3-233ENST00000568452 PTPDC1A2A3K4 754 aa22.25■■□□□ 1.15
CLN3-233ENST00000568452 GOLGA6L22H0YM25 854 aa22.25■■□□□ 1.15
CLN3-233ENST00000568452 PSMD14O00487 310 aa22.25■■□□□ 1.15
CLN3-233ENST00000568452 CPLX1O14810 134 aa22.25■■□□□ 1.15
CLN3-233ENST00000568452 RAD17O75943 681 aa22.25■■□□□ 1.15
CLN3-233ENST00000568452 ZSCAN22P10073 491 aaPredicted RBP22.25■■□□□ 1.15
CLN3-233ENST00000568452 PTMSP20962 102 aa22.25■■□□□ 1.15
CLN3-233ENST00000568452 SEC23AQ15436 765 aa22.25■■□□□ 1.15
CLN3-233ENST00000568452 CCDC178Q5BJE1 867 aa22.25■■□□□ 1.15
CLN3-233ENST00000568452 TSPY2A6NKD2 308 aa22.24■■□□□ 1.15
CLN3-233ENST00000568452 NFKBIEO00221 500 aa22.24■■□□□ 1.15
CLN3-233ENST00000568452 JAK2O60674 1132 aa22.24■■□□□ 1.15
CLN3-233ENST00000568452 PLCD1P51178 756 aa22.24■■□□□ 1.15
CLN3-233ENST00000568452 EVX2Q03828 476 aa22.24■■□□□ 1.15
CLN3-233ENST00000568452 PICALMQ13492 652 aa22.24■■□□□ 1.15
CLN3-233ENST00000568452 C16orf86Q6ZW13 317 aa22.24■■□□□ 1.15
CLN3-233ENST00000568452 AGBL3Q8NEM8 1001 aa22.24■■□□□ 1.15
CLN3-233ENST00000568452 MYH1P12882 1939 aa22.24■■□□□ 1.15
CLN3-233ENST00000568452 COL4A5P29400 1685 aa22.24■■□□□ 1.15
CLN3-233ENST00000568452 GOLGA8AA7E2F4 631 aa22.24■■□□□ 1.15
CLN3-233ENST00000568452 NPM3O75607 178 aaKnown RBP22.24■■□□□ 1.15
CLN3-233ENST00000568452 CDKL5O76039 1030 aa22.24■■□□□ 1.15
CLN3-233ENST00000568452 BAG4O95429 457 aaKnown RBP22.24■■□□□ 1.15
CLN3-233ENST00000568452 CTDNEP1O95476 244 aa22.24■■□□□ 1.15
CLN3-233ENST00000568452 SLC4A8Q2Y0W8 1093 aa22.24■■□□□ 1.15
CLN3-233ENST00000568452 ZNF444Q8N0Y2 327 aaPredicted RBP22.24■■□□□ 1.15
CLN3-233ENST00000568452 DYNLL2Q96FJ2 89 aa22.24■■□□□ 1.15
CLN3-233ENST00000568452 GMLQ99445 158 aa22.24■■□□□ 1.15
CLN3-233ENST00000568452 SENP2Q9HC62 589 aa22.24■■□□□ 1.15
CLN3-233ENST00000568452 NID2Q14112 1375 aa22.23■■□□□ 1.15
CLN3-233ENST00000568452 PPP2R5BQ15173 497 aa22.23■■□□□ 1.15
CLN3-233ENST00000568452 IFIT1BQ5T764 474 aaKnown RBP22.23■■□□□ 1.15
CLN3-233ENST00000568452 MICU3Q86XE3 530 aa22.23■■□□□ 1.15
CLN3-233ENST00000568452 OGFOD1Q8N543 542 aa22.23■■□□□ 1.15
CLN3-233ENST00000568452 IDI2Q9BXS1 227 aa22.23■■□□□ 1.15
CLN3-233ENST00000568452 OSBPL5Q9H0X9 879 aaPredicted RBP22.23■■□□□ 1.15
CLN3-233ENST00000568452 ATP6V1DQ9Y5K8 247 aa22.23■■□□□ 1.15
CLN3-233ENST00000568452 ADAMTSL1Q8N6G6 1762 aa22.22■■□□□ 1.15
CLN3-233ENST00000568452 CFAP100Q494V2 611 aa22.22■■□□□ 1.15
CLN3-233ENST00000568452 CIAPIN1Q6FI81 312 aa22.22■■□□□ 1.15
CLN3-233ENST00000568452 ENAHQ8N8S7 591 aaPredicted RBP22.22■■□□□ 1.15
CLN3-233ENST00000568452 MTMR6Q9Y217 621 aa22.22■■□□□ 1.15
CLN3-233ENST00000568452 ARFGEF1Q9Y6D6 1849 aa22.22■■□□□ 1.15
CLN3-233ENST00000568452 CCDC196A0A1B0GTZ2 297 aa22.21■■□□□ 1.15
CLN3-233ENST00000568452 HLA-DOAP06340 250 aa22.21■■□□□ 1.15
CLN3-233ENST00000568452 CDK8P49336 464 aa22.21■■□□□ 1.15
CLN3-233ENST00000568452 MMP14P50281 582 aa22.21■■□□□ 1.15
CLN3-233ENST00000568452 TNIP1Q15025 636 aa22.21■■□□□ 1.15
CLN3-233ENST00000568452 FAM47AQ5JRC9 791 aa22.21■■□□□ 1.15
CLN3-233ENST00000568452 FOXD4L5Q5VV16 416 aaPredicted RBP22.21■■□□□ 1.15
CLN3-233ENST00000568452 ZNF654Q8IZM8 581 aa22.21■■□□□ 1.15
CLN3-233ENST00000568452 FOXD4L4Q8WXT5 416 aaPredicted RBP22.21■■□□□ 1.15
CLN3-233ENST00000568452 DDX11Q96FC9 970 aa22.21■■□□□ 1.15
CLN3-233ENST00000568452 DDX4Q9NQI0 724 aaKnown RBP22.21■■□□□ 1.15
CLN3-233ENST00000568452 TAOK2Q9UL54 1235 aa22.21■■□□□ 1.15
CLN3-233ENST00000568452 ECM29Q5VYK3 1845 aa22.21■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms