RNA–Protein interactions for RNA: ENST00000568443.2

CLN3-232, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 969 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-232ENST00000568443 HERC5Q9UII4 1024 aaKnown RBP27.41■■□□□ 1.98
CLN3-232ENST00000568443 DOCK1Q14185 1865 aa27.4■■□□□ 1.98
CLN3-232ENST00000568443 TRIM75PA6NK02 468 aa27.4■■□□□ 1.98
CLN3-232ENST00000568443 SIRT2Q8IXJ6 389 aa27.4■■□□□ 1.98
CLN3-232ENST00000568443 ARHGAP39Q9C0H5 1083 aa27.4■■□□□ 1.98
CLN3-232ENST00000568443 NDUFB9Q9Y6M9 179 aa27.4■■□□□ 1.98
CLN3-232ENST00000568443 GNRH1P01148 92 aa27.39■■□□□ 1.98
CLN3-232ENST00000568443 MAP3K12Q12852 859 aa27.39■■□□□ 1.98
CLN3-232ENST00000568443 ARMC5Q96C12 935 aa27.39■■□□□ 1.98
CLN3-232ENST00000568443 FRMD4AQ9P2Q2 1039 aaPredicted RBP27.39■■□□□ 1.98
CLN3-232ENST00000568443 PTCH2Q9Y6C5 1203 aa27.39■■□□□ 1.98
CLN3-232ENST00000568443 ECM2O94769 699 aaPredicted RBP27.38■■□□□ 1.97
CLN3-232ENST00000568443 CYP2C8P10632 490 aa27.38■■□□□ 1.97
CLN3-232ENST00000568443 CAP2P40123 477 aa27.38■■□□□ 1.97
CLN3-232ENST00000568443 DYNLL1P63167 89 aaKnown RBP27.38■■□□□ 1.97
CLN3-232ENST00000568443 NBPF11Q86T75 865 aa27.38■■□□□ 1.97
CLN3-232ENST00000568443 CCDC84Q86UT8 332 aaPredicted RBP27.38■■□□□ 1.97
CLN3-232ENST00000568443 MAGEB6Q8N7X4 407 aa27.38■■□□□ 1.97
CLN3-232ENST00000568443 BCL11AQ9H165 835 aa27.38■■□□□ 1.97
CLN3-232ENST00000568443 ANTXR1Q9H6X2 564 aa27.38■■□□□ 1.97
CLN3-232ENST00000568443 CENPFP49454 3210 aa27.38■■□□□ 1.97
CLN3-232ENST00000568443 RAB11FIP3O75154 756 aa27.37■■□□□ 1.97
CLN3-232ENST00000568443 IFIT2P09913 472 aaKnown RBP27.37■■□□□ 1.97
CLN3-232ENST00000568443 PDE3AQ14432 1141 aa27.37■■□□□ 1.97
CLN3-232ENST00000568443 SLC9C1Q4G0N8 1177 aa27.37■■□□□ 1.97
CLN3-232ENST00000568443 FOXP4Q8IVH2 680 aaPredicted RBP27.37■■□□□ 1.97
CLN3-232ENST00000568443 TRIM34Q9BYJ4 488 aa27.37■■□□□ 1.97
CLN3-232ENST00000568443 FLT1P17948 1338 aa27.37■■□□□ 1.97
CLN3-232ENST00000568443 ADGRA2Q96PE1 1338 aa27.37■■□□□ 1.97
CLN3-232ENST00000568443 PSMC4P43686 418 aa27.36■■□□□ 1.97
CLN3-232ENST00000568443 TMED8Q6PL24 325 aaPredicted RBP27.36■■□□□ 1.97
CLN3-232ENST00000568443 CERS3Q8IU89 383 aa27.36■■□□□ 1.97
CLN3-232ENST00000568443 MIGA1Q8NAN2 632 aa27.36■■□□□ 1.97
CLN3-232ENST00000568443 PALD1Q9ULE6 856 aa27.36■■□□□ 1.97
CLN3-232ENST00000568443 SLC45A1Q9Y2W3 748 aa27.36■■□□□ 1.97
CLN3-232ENST00000568443 PDE4DIPQ5VU43 2346 aa27.35■■□□□ 1.97
CLN3-232ENST00000568443 PRMT2P55345 433 aa27.35■■□□□ 1.97
CLN3-232ENST00000568443 SPP2Q13103 211 aa27.35■■□□□ 1.97
CLN3-232ENST00000568443 C20orf194Q5TEA3 1177 aa27.35■■□□□ 1.97
CLN3-232ENST00000568443 CRACR2BQ8N4Y2 399 aaPredicted RBP27.35■■□□□ 1.97
CLN3-232ENST00000568443 TBC1D2Q9BYX2 928 aa27.35■■□□□ 1.97
CLN3-232ENST00000568443 PHIPQ8WWQ0 1821 aa27.34■■□□□ 1.97
CLN3-232ENST00000568443 USP17L5A8MUK1 530 aa27.34■■□□□ 1.97
CLN3-232ENST00000568443 FMNL1O95466 1100 aaPredicted RBP27.34■■□□□ 1.97
CLN3-232ENST00000568443 HOXD10P28358 340 aa27.34■■□□□ 1.97
CLN3-232ENST00000568443 RRP1BQ14684 758 aaKnown RBP27.34■■□□□ 1.97
CLN3-232ENST00000568443 TTF1Q15361 905 aaPredicted RBP27.34■■□□□ 1.97
CLN3-232ENST00000568443 ZNF280CQ8ND82 737 aa27.34■■□□□ 1.97
CLN3-232ENST00000568443 SAP30BPQ9UHR5 308 aaKnown RBP27.34■■□□□ 1.97
CLN3-232ENST00000568443 HLA-DOAP06340 250 aa27.33■■□□□ 1.97
CLN3-232ENST00000568443 BCRP11274 1271 aa27.33■■□□□ 1.97
CLN3-232ENST00000568443 TRIM47Q96LD4 638 aa27.33■■□□□ 1.97
CLN3-232ENST00000568443 TMEM106CQ9BVX2 250 aa27.33■■□□□ 1.97
CLN3-232ENST00000568443 CDK5RAP2Q96SN8 1893 aa27.33■■□□□ 1.97
CLN3-232ENST00000568443 ZSWIM8A7E2V4 1837 aa27.32■■□□□ 1.96
CLN3-232ENST00000568443 KIAA0100Q14667 2235 aaKnown RBP27.32■■□□□ 1.96
CLN3-232ENST00000568443 PTPRFP10586 1907 aa27.32■■□□□ 1.96
CLN3-232ENST00000568443 POTEFA5A3E0 1075 aa27.32■■□□□ 1.96
CLN3-232ENST00000568443 CTGFP29279 349 aa27.32■■□□□ 1.96
CLN3-232ENST00000568443 USP5P45974 858 aa27.32■■□□□ 1.96
CLN3-232ENST00000568443 METTL16Q86W50 562 aaKnown RBP27.32■■□□□ 1.96
CLN3-232ENST00000568443 SMCR8Q8TEV9 937 aaPredicted RBP27.32■■□□□ 1.96
CLN3-232ENST00000568443 ZNF333Q96JL9 665 aa27.32■■□□□ 1.96
CLN3-232ENST00000568443 AS3MTQ9HBK9 375 aa27.32■■□□□ 1.96
CLN3-232ENST00000568443 AGTPBP1Q9UPW5 1226 aa27.32■■□□□ 1.96
CLN3-232ENST00000568443 PROCA1Q8NCQ7 364 aaPredicted RBP27.31■■□□□ 1.96
CLN3-232ENST00000568443 PPIL4Q8WUA2 492 aaKnown RBP eCLIP27.31■■□□□ 1.96
CLN3-232ENST00000568443 SRRDQ9UH36 339 aa27.31■■□□□ 1.96
CLN3-232ENST00000568443 FOCADQ5VW36 1801 aa27.3■■□□□ 1.96
CLN3-232ENST00000568443 ASNSP08243 561 aa27.3■■□□□ 1.96
CLN3-232ENST00000568443 DNAJC2Q99543 621 aaKnown RBP27.3■■□□□ 1.96
CLN3-232ENST00000568443 ATAD5Q96QE3 1844 aa27.3■■□□□ 1.96
CLN3-232ENST00000568443 OSBPP22059 807 aa27.29■■□□□ 1.96
CLN3-232ENST00000568443 FCGRTP55899 365 aa27.29■■□□□ 1.96
CLN3-232ENST00000568443 SLC4A8Q2Y0W8 1093 aa27.29■■□□□ 1.96
CLN3-232ENST00000568443 TREML2Q5T2D2 321 aa27.29■■□□□ 1.96
CLN3-232ENST00000568443 SLC9C2Q5TAH2 1124 aa27.29■■□□□ 1.96
CLN3-232ENST00000568443 SH3TC2Q8TF17 1288 aa27.29■■□□□ 1.96
CLN3-232ENST00000568443 DNAJC18Q9H819 358 aa27.29■■□□□ 1.96
CLN3-232ENST00000568443 PNMA3Q9UL41 463 aa27.29■■□□□ 1.96
CLN3-232ENST00000568443 SIPA1L1O43166 1804 aa27.28■■□□□ 1.96
CLN3-232ENST00000568443 GOLIM4O00461 696 aa27.28■■□□□ 1.96
CLN3-232ENST00000568443 HMGCS2P54868 508 aa27.28■■□□□ 1.96
CLN3-232ENST00000568443 PABPC4Q13310 644 aaKnown RBP eCLIP27.27■■□□□ 1.96
CLN3-232ENST00000568443 RAET1EQ8TD07 263 aa27.27■■□□□ 1.96
CLN3-232ENST00000568443 WDR18Q9BV38 432 aa27.27■■□□□ 1.96
CLN3-232ENST00000568443 GINM1Q9NU53 330 aa27.27■■□□□ 1.96
CLN3-232ENST00000568443 MYPNQ86TC9 1320 aa27.26■■□□□ 1.95
CLN3-232ENST00000568443 MAGEB6P1A0A0J9YX57 407 aa27.26■■□□□ 1.95
CLN3-232ENST00000568443 MYCP01106 439 aaPredicted RBP27.26■■□□□ 1.95
CLN3-232ENST00000568443 PDE6AP16499 860 aa27.26■■□□□ 1.95
CLN3-232ENST00000568443 SH3D19Q5HYK7 790 aa27.26■■□□□ 1.95
CLN3-232ENST00000568443 MYH1P12882 1939 aa27.26■■□□□ 1.95
CLN3-232ENST00000568443 GDF11O95390 407 aa27.25■■□□□ 1.95
CLN3-232ENST00000568443 EN2P19622 333 aaPredicted RBP27.25■■□□□ 1.95
CLN3-232ENST00000568443 JAG1P78504 1218 aa27.25■■□□□ 1.95
CLN3-232ENST00000568443 TTC6Q86TZ1 520 aa27.25■■□□□ 1.95
CLN3-232ENST00000568443 RIOK1Q9BRS2 568 aaKnown RBP27.25■■□□□ 1.95
CLN3-232ENST00000568443 LRRCC1Q9C099 1032 aa27.25■■□□□ 1.95
CLN3-232ENST00000568443 ATP5JP18859 108 aa27.24■■□□□ 1.95
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms