RNA–Protein interactions for RNA: ENST00000567992.1

CLK3-220, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 603 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-220ENST00000567992 CSADQ9Y600 493 aa11.84□□□□□ -0.51
CLK3-220ENST00000567992 M0R2C6 588 aa11.83□□□□□ -0.52
CLK3-220ENST00000567992 PRKAB2O43741 272 aa11.83□□□□□ -0.52
CLK3-220ENST00000567992 USP5P45974 858 aa11.83□□□□□ -0.52
CLK3-220ENST00000567992 EVX2Q03828 476 aa11.83□□□□□ -0.52
CLK3-220ENST00000567992 SDR42E1Q8WUS8 393 aa11.83□□□□□ -0.52
CLK3-220ENST00000567992 APPBP2Q92624 585 aa11.83□□□□□ -0.52
CLK3-220ENST00000567992 OSBP2Q969R2 916 aa11.83□□□□□ -0.52
CLK3-220ENST00000567992 CRNKL1Q9BZJ0 848 aaKnown RBP11.83□□□□□ -0.52
CLK3-220ENST00000567992 DCP1AQ9NPI6 582 aaPredicted RBP11.83□□□□□ -0.52
CLK3-220ENST00000567992 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.83□□□□□ -0.52
CLK3-220ENST00000567992 PI4KBQ9UBF8 816 aa11.83□□□□□ -0.52
CLK3-220ENST00000567992 ZFYP08048 801 aaPredicted RBP11.82□□□□□ -0.52
CLK3-220ENST00000567992 HSPA8P11142 646 aaKnown RBP11.82□□□□□ -0.52
CLK3-220ENST00000567992 TM4SF4P48230 202 aa11.82□□□□□ -0.52
CLK3-220ENST00000567992 SLC4A8Q2Y0W8 1093 aa11.82□□□□□ -0.52
CLK3-220ENST00000567992 REM2Q8IYK8 340 aaPredicted RBP11.82□□□□□ -0.52
CLK3-220ENST00000567992 SCYL3Q8IZE3 742 aa11.82□□□□□ -0.52
CLK3-220ENST00000567992 EVI5LQ96CN4 794 aa11.82□□□□□ -0.52
CLK3-220ENST00000567992 OTUD5Q96G74 571 aa11.82□□□□□ -0.52
CLK3-220ENST00000567992 MS4A4AQ96JQ5 239 aa11.82□□□□□ -0.52
CLK3-220ENST00000567992 SEC62Q99442 399 aaKnown RBP11.82□□□□□ -0.52
CLK3-220ENST00000567992 FSD1Q9BTV5 496 aa11.82□□□□□ -0.52
CLK3-220ENST00000567992 EHD4Q9H223 541 aa11.82□□□□□ -0.52
CLK3-220ENST00000567992 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.82□□□□□ -0.52
CLK3-220ENST00000567992 HERC5Q9UII4 1024 aaKnown RBP11.82□□□□□ -0.52
CLK3-220ENST00000567992 LOC285556D6RIA3 1793 aa11.82□□□□□ -0.52
CLK3-220ENST00000567992 MYH8P13535 1937 aa11.82□□□□□ -0.52
CLK3-220ENST00000567992 TESPA1A2RU30 521 aaPredicted RBP11.81□□□□□ -0.52
CLK3-220ENST00000567992 MANSC4A6NHS7 340 aaPredicted RBP11.81□□□□□ -0.52
CLK3-220ENST00000567992 IGF2BP3O00425 579 aaKnown RBP eCLIP11.81□□□□□ -0.52
CLK3-220ENST00000567992 CYP2D6P10635 497 aa11.81□□□□□ -0.52
CLK3-220ENST00000567992 PLCD1P51178 756 aa11.81□□□□□ -0.52
CLK3-220ENST00000567992 JAG1P78504 1218 aa11.81□□□□□ -0.52
CLK3-220ENST00000567992 PPATQ06203 517 aa11.81□□□□□ -0.52
CLK3-220ENST00000567992 PPIL2Q13356 520 aa11.81□□□□□ -0.52
CLK3-220ENST00000567992 ZMYM1Q5SVZ6 1142 aa11.81□□□□□ -0.52
CLK3-220ENST00000567992 ERO1BQ86YB8 467 aa11.81□□□□□ -0.52
CLK3-220ENST00000567992 AIDAQ96BJ3 306 aa11.81□□□□□ -0.52
CLK3-220ENST00000567992 STRBPQ96SI9 672 aaKnown RBP11.81□□□□□ -0.52
CLK3-220ENST00000567992 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.81□□□□□ -0.52
CLK3-220ENST00000567992 RNF186Q9NXI6 227 aa11.81□□□□□ -0.52
CLK3-220ENST00000567992 SMIM22K7EJ46 135 aa11.8□□□□□ -0.52
CLK3-220ENST00000567992 IRF6O14896 467 aa11.8□□□□□ -0.52
CLK3-220ENST00000567992 GPAA1O43292 621 aa11.8□□□□□ -0.52
CLK3-220ENST00000567992 CTNND1O60716 968 aaKnown RBP11.8□□□□□ -0.52
CLK3-220ENST00000567992 HLA-DOAP06340 250 aa11.8□□□□□ -0.52
CLK3-220ENST00000567992 PTPRAP18433 802 aa11.8□□□□□ -0.52
CLK3-220ENST00000567992 GABPAQ06546 454 aa11.8□□□□□ -0.52
CLK3-220ENST00000567992 SREBF2Q12772 1141 aa11.8□□□□□ -0.52
CLK3-220ENST00000567992 SHROOM1Q2M3G4 852 aaPredicted RBP11.8□□□□□ -0.52
CLK3-220ENST00000567992 FOXP4Q8IVH2 680 aaPredicted RBP11.8□□□□□ -0.52
CLK3-220ENST00000567992 BRI3BPQ8WY22 251 aa11.8□□□□□ -0.52
CLK3-220ENST00000567992 PTPN18Q99952 460 aa11.8□□□□□ -0.52
CLK3-220ENST00000567992 EPB41L4AQ9HCS5 686 aaPredicted RBP11.8□□□□□ -0.52
CLK3-220ENST00000567992 ATP8A2Q9NTI2 1148 aa11.8□□□□□ -0.52
CLK3-220ENST00000567992 SAGE1Q9NXZ1 904 aa11.8□□□□□ -0.52
CLK3-220ENST00000567992 TSKSQ9UJT2 592 aa11.8□□□□□ -0.52
CLK3-220ENST00000567992 KCNH4Q9UQ05 1017 aa11.8□□□□□ -0.52
CLK3-220ENST00000567992 SLC4A4Q9Y6R1 1079 aa11.8□□□□□ -0.52
CLK3-220ENST00000567992 GSG1L2A8MUP6 293 aa11.79□□□□□ -0.52
CLK3-220ENST00000567992 FOXP2O15409 715 aa11.79□□□□□ -0.52
CLK3-220ENST00000567992 CA12O43570 354 aa11.79□□□□□ -0.52
CLK3-220ENST00000567992 GSPT1P15170 499 aaKnown RBP11.79□□□□□ -0.52
CLK3-220ENST00000567992 SHMT1P34896 483 aa11.79□□□□□ -0.52
CLK3-220ENST00000567992 CAP2P40123 477 aa11.79□□□□□ -0.52
CLK3-220ENST00000567992 CTCFP49711 727 aaPredicted RBP11.79□□□□□ -0.52
CLK3-220ENST00000567992 MOGSQ13724 837 aa11.79□□□□□ -0.52
CLK3-220ENST00000567992 TATDN1Q6P1N9 297 aa11.79□□□□□ -0.52
CLK3-220ENST00000567992 CCDC84Q86UT8 332 aaPredicted RBP11.79□□□□□ -0.52
CLK3-220ENST00000567992 IFNL1Q8IU54 200 aa11.79□□□□□ -0.52
CLK3-220ENST00000567992 MCM9Q9NXL9 1143 aa11.79□□□□□ -0.52
CLK3-220ENST00000567992 SERPINB13Q9UIV8 391 aa11.79□□□□□ -0.52
CLK3-220ENST00000567992 GREB1LQ9C091 1923 aaPredicted RBP11.79□□□□□ -0.52
CLK3-220ENST00000567992 CYP2D7A0A087X1C5 515 aa11.78□□□□□ -0.52
CLK3-220ENST00000567992 A0A0D9SFI3 127 aa11.78□□□□□ -0.52
CLK3-220ENST00000567992 TRPA1O75762 1119 aa11.78□□□□□ -0.52
CLK3-220ENST00000567992 GTF2A2P52657 109 aa11.78□□□□□ -0.52
CLK3-220ENST00000567992 LRRFIP1Q32MZ4 808 aaKnown RBP11.78□□□□□ -0.52
CLK3-220ENST00000567992 TTC22Q5TAA0 569 aa11.78□□□□□ -0.52
CLK3-220ENST00000567992 CCDC129Q6ZRS4 1044 aa11.78□□□□□ -0.52
CLK3-220ENST00000567992 TTC6Q86TZ1 520 aa11.78□□□□□ -0.52
CLK3-220ENST00000567992 TICAM2Q86XR7 235 aa11.78□□□□□ -0.52
CLK3-220ENST00000567992 CRACR2BQ8N4Y2 399 aaPredicted RBP11.78□□□□□ -0.52
CLK3-220ENST00000567992 FAM227BQ96M60 508 aa11.78□□□□□ -0.52
CLK3-220ENST00000567992 BEGAINQ9BUH8 593 aa11.78□□□□□ -0.52
CLK3-220ENST00000567992 CFHR5Q9BXR6 569 aa11.78□□□□□ -0.52
CLK3-220ENST00000567992 AFG3L2Q9Y4W6 797 aa11.78□□□□□ -0.52
CLK3-220ENST00000567992 ROBO3Q96MS0 1386 aa11.78□□□□□ -0.52
CLK3-220ENST00000567992 CCL15-CCL14A0A0B4J2E2 113 aa11.77□□□□□ -0.53
CLK3-220ENST00000567992 TRIM6-TRIM34B2RNG4 842 aa11.77□□□□□ -0.53
CLK3-220ENST00000567992 GDF11O95390 407 aa11.77□□□□□ -0.53
CLK3-220ENST00000567992 POLR3DP05423 398 aaPredicted RBP11.77□□□□□ -0.53
CLK3-220ENST00000567992 LBX1P52954 281 aa11.77□□□□□ -0.53
CLK3-220ENST00000567992 INHBEP58166 350 aa11.77□□□□□ -0.53
CLK3-220ENST00000567992 CCL15Q16663 113 aa11.77□□□□□ -0.53
CLK3-220ENST00000567992 C12orf60Q5U649 245 aa11.77□□□□□ -0.53
CLK3-220ENST00000567992 GIMAP6Q6P9H5 292 aa11.77□□□□□ -0.53
CLK3-220ENST00000567992 CTR9Q6PD62 1173 aa11.77□□□□□ -0.53
CLK3-220ENST00000567992 CENPQQ7L2Z9 268 aaPredicted RBP11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms