RNA–Protein interactions for RNA: ENST00000567223.6

SMPD3-209, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 2

Gene SMPD3, Length 530 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-209ENST00000567223 XPO5Q9HAV4 1204 aaKnown RBP eCLIP22.74■■□□□ 1.23
SMPD3-209ENST00000567223 MYO5AQ9Y4I1 1855 aaKnown RBP22.74■■□□□ 1.23
SMPD3-209ENST00000567223 FLT1P17948 1338 aa22.74■■□□□ 1.23
SMPD3-209ENST00000567223 BRCA2P51587 3418 aa22.73■■□□□ 1.23
SMPD3-209ENST00000567223 PTPRFP10586 1907 aa22.73■■□□□ 1.23
SMPD3-209ENST00000567223 LACTBP83111 547 aaPredicted RBP22.73■■□□□ 1.23
SMPD3-209ENST00000567223 CAP1Q01518 475 aa22.73■■□□□ 1.23
SMPD3-209ENST00000567223 MAP3K12Q12852 859 aa22.73■■□□□ 1.23
SMPD3-209ENST00000567223 GPAT2Q6NUI2 795 aa22.73■■□□□ 1.23
SMPD3-209ENST00000567223 ARMC5Q96C12 935 aa22.73■■□□□ 1.23
SMPD3-209ENST00000567223 SIPA1L1O43166 1804 aa22.73■■□□□ 1.23
SMPD3-209ENST00000567223 CAP2P40123 477 aa22.72■■□□□ 1.23
SMPD3-209ENST00000567223 PRMT2P55345 433 aa22.72■■□□□ 1.23
SMPD3-209ENST00000567223 PARK7Q99497 189 aaKnown RBP22.72■■□□□ 1.23
SMPD3-209ENST00000567223 IL1RAPL2Q9NP60 686 aa22.72■■□□□ 1.23
SMPD3-209ENST00000567223 GINM1Q9NU53 330 aa22.72■■□□□ 1.23
SMPD3-209ENST00000567223 RBBP6Q7Z6E9 1792 aaKnown RBP22.71■■□□□ 1.23
SMPD3-209ENST00000567223 IDH1O75874 414 aaKnown RBP22.71■■□□□ 1.23
SMPD3-209ENST00000567223 FOXP4Q8IVH2 680 aaPredicted RBP22.71■■□□□ 1.23
SMPD3-209ENST00000567223 CYP7A1P22680 504 aa22.7■■□□□ 1.22
SMPD3-209ENST00000567223 SOX10P56693 466 aa22.7■■□□□ 1.22
SMPD3-209ENST00000567223 KIF22Q14807 665 aa22.7■■□□□ 1.22
SMPD3-209ENST00000567223 PROCA1Q8NCQ7 364 aaPredicted RBP22.7■■□□□ 1.22
SMPD3-209ENST00000567223 TGFBRAP1Q8WUH2 860 aa22.7■■□□□ 1.22
SMPD3-209ENST00000567223 ANTXR1Q9H6X2 564 aa22.7■■□□□ 1.22
SMPD3-209ENST00000567223 SLURP2P0DP57 97 aa22.69■■□□□ 1.22
SMPD3-209ENST00000567223 C20orf194Q5TEA3 1177 aa22.69■■□□□ 1.22
SMPD3-209ENST00000567223 ATAD5Q96QE3 1844 aa22.68■■□□□ 1.22
SMPD3-209ENST00000567223 LOC285556D6RIA3 1793 aa22.68■■□□□ 1.22
SMPD3-209ENST00000567223 IFIT2P09913 472 aaKnown RBP22.68■■□□□ 1.22
SMPD3-209ENST00000567223 BCRP11274 1271 aa22.68■■□□□ 1.22
SMPD3-209ENST00000567223 MAGEB6Q8N7X4 407 aa22.68■■□□□ 1.22
SMPD3-209ENST00000567223 AGTPBP1Q9UPW5 1226 aa22.68■■□□□ 1.22
SMPD3-209ENST00000567223 ASNSP08243 561 aa22.67■■□□□ 1.22
SMPD3-209ENST00000567223 MAPKAPK5Q8IW41 473 aa22.67■■□□□ 1.22
SMPD3-209ENST00000567223 ZNF280CQ8ND82 737 aa22.67■■□□□ 1.22
SMPD3-209ENST00000567223 EHD4Q9H223 541 aa22.67■■□□□ 1.22
SMPD3-209ENST00000567223 DNAJC18Q9H819 358 aa22.67■■□□□ 1.22
SMPD3-209ENST00000567223 FAM196BA6NMK8 535 aa22.66■■□□□ 1.22
SMPD3-209ENST00000567223 USP17L5A8MUK1 530 aa22.66■■□□□ 1.22
SMPD3-209ENST00000567223 RRP1BQ14684 758 aaKnown RBP22.66■■□□□ 1.22
SMPD3-209ENST00000567223 SH3D19Q5HYK7 790 aa22.66■■□□□ 1.22
SMPD3-209ENST00000567223 RIOK1Q9BRS2 568 aaKnown RBP22.66■■□□□ 1.22
SMPD3-209ENST00000567223 WDR18Q9BV38 432 aa22.66■■□□□ 1.22
SMPD3-209ENST00000567223 DDX60LQ5H9U9 1706 aaKnown RBP22.65■■□□□ 1.22
SMPD3-209ENST00000567223 TRIM75PA6NK02 468 aa22.65■■□□□ 1.22
SMPD3-209ENST00000567223 HLA-DOAP06340 250 aa22.65■■□□□ 1.22
SMPD3-209ENST00000567223 ATP5JP18859 108 aa22.65■■□□□ 1.22
SMPD3-209ENST00000567223 DYNLL1P63167 89 aaKnown RBP22.65■■□□□ 1.22
SMPD3-209ENST00000567223 AS3MTQ9HBK9 375 aa22.65■■□□□ 1.22
SMPD3-209ENST00000567223 CPA4Q9UI42 421 aa22.65■■□□□ 1.22
SMPD3-209ENST00000567223 TAOK2Q9UL54 1235 aa22.65■■□□□ 1.22
SMPD3-209ENST00000567223 NDUFB9Q9Y6M9 179 aa22.65■■□□□ 1.22
SMPD3-209ENST00000567223 MKI67P46013 3256 aaKnown RBP22.65■■□□□ 1.22
SMPD3-209ENST00000567223 NBPF11Q86T75 865 aa22.64■■□□□ 1.21
SMPD3-209ENST00000567223 ZNF333Q96JL9 665 aa22.64■■□□□ 1.21
SMPD3-209ENST00000567223 LRRCC1Q9C099 1032 aa22.64■■□□□ 1.21
SMPD3-209ENST00000567223 PNMA3Q9UL41 463 aa22.64■■□□□ 1.21
SMPD3-209ENST00000567223 PALD1Q9ULE6 856 aa22.64■■□□□ 1.21
SMPD3-209ENST00000567223 CYP2C8P10632 490 aa22.63■■□□□ 1.21
SMPD3-209ENST00000567223 HOXD10P28358 340 aa22.63■■□□□ 1.21
SMPD3-209ENST00000567223 SPP2Q13103 211 aa22.63■■□□□ 1.21
SMPD3-209ENST00000567223 TATDN1Q6P1N9 297 aa22.63■■□□□ 1.21
SMPD3-209ENST00000567223 MIGA1Q8NAN2 632 aa22.63■■□□□ 1.21
SMPD3-209ENST00000567223 ARHGAP39Q9C0H5 1083 aa22.63■■□□□ 1.21
SMPD3-209ENST00000567223 FRMD4AQ9P2Q2 1039 aaPredicted RBP22.63■■□□□ 1.21
SMPD3-209ENST00000567223 PTCH2Q9Y6C5 1203 aa22.63■■□□□ 1.21
SMPD3-209ENST00000567223 TCRBV5S4A2TA0A5A2 114 aa22.62■■□□□ 1.21
SMPD3-209ENST00000567223 PDE6AP16499 860 aa22.62■■□□□ 1.21
SMPD3-209ENST00000567223 CTGFP29279 349 aa22.62■■□□□ 1.21
SMPD3-209ENST00000567223 PSMC4P43686 418 aa22.62■■□□□ 1.21
SMPD3-209ENST00000567223 SLC9C1Q4G0N8 1177 aa22.62■■□□□ 1.21
SMPD3-209ENST00000567223 SLC9C2Q5TAH2 1124 aa22.62■■□□□ 1.21
SMPD3-209ENST00000567223 GADL1Q6ZQY3 521 aa22.62■■□□□ 1.21
SMPD3-209ENST00000567223 CRACR2BQ8N4Y2 399 aaPredicted RBP22.62■■□□□ 1.21
SMPD3-209ENST00000567223 TRIM47Q96LD4 638 aa22.62■■□□□ 1.21
SMPD3-209ENST00000567223 SRRDQ9UH36 339 aa22.62■■□□□ 1.21
SMPD3-209ENST00000567223 ZSWIM8A7E2V4 1837 aa22.61■■□□□ 1.21
SMPD3-209ENST00000567223 MYH1P12882 1939 aa22.61■■□□□ 1.21
SMPD3-209ENST00000567223 USP5P45974 858 aa22.61■■□□□ 1.21
SMPD3-209ENST00000567223 PABPC4Q13310 644 aaKnown RBP eCLIP22.61■■□□□ 1.21
SMPD3-209ENST00000567223 TTC6Q86TZ1 520 aa22.61■■□□□ 1.21
SMPD3-209ENST00000567223 HAUS7Q99871 368 aa22.61■■□□□ 1.21
SMPD3-209ENST00000567223 DCTPP1Q9H773 170 aa22.61■■□□□ 1.21
SMPD3-209ENST00000567223 PAG1Q9NWQ8 432 aa22.61■■□□□ 1.21
SMPD3-209ENST00000567223 SERPINB13Q9UIV8 391 aa22.61■■□□□ 1.21
SMPD3-209ENST00000567223 C19orf81C9J6K1 198 aa22.6■■□□□ 1.21
SMPD3-209ENST00000567223 APBB1O00213 710 aa22.6■■□□□ 1.21
SMPD3-209ENST00000567223 GOLIM4O00461 696 aa22.6■■□□□ 1.21
SMPD3-209ENST00000567223 BACE1P56817 501 aa22.6■■□□□ 1.21
SMPD3-209ENST00000567223 CCDC84Q86UT8 332 aaPredicted RBP22.6■■□□□ 1.21
SMPD3-209ENST00000567223 TRIM34Q9BYJ4 488 aa22.6■■□□□ 1.21
SMPD3-209ENST00000567223 MAGEB6P1A0A0J9YX57 407 aa22.59■■□□□ 1.21
SMPD3-209ENST00000567223 OSBPP22059 807 aa22.59■■□□□ 1.21
SMPD3-209ENST00000567223 FCGRTP55899 365 aa22.59■■□□□ 1.21
SMPD3-209ENST00000567223 FAM110CQ1W6H9 321 aa22.59■■□□□ 1.21
SMPD3-209ENST00000567223 TREML2Q5T2D2 321 aa22.59■■□□□ 1.21
SMPD3-209ENST00000567223 SMCR8Q8TEV9 937 aaPredicted RBP22.59■■□□□ 1.21
SMPD3-209ENST00000567223 DNAJC2Q99543 621 aaKnown RBP22.59■■□□□ 1.21
SMPD3-209ENST00000567223 ZBTB21Q9ULJ3 1066 aa22.59■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms