RNA–Protein interactions for RNA: ENST00000566808.2

CDH3-205, Transcript of cadherin 3, humanhuman

TSL 5

Gene CDH3, Length 573 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-205ENST00000566808 SOCS4Q8WXH5 440 aa21.03■□□□□ 0.96
CDH3-205ENST00000566808 DDTLA6NHG4 134 aaPredicted RBP21.02■□□□□ 0.96
CDH3-205ENST00000566808 ZNF697Q5TEC3 545 aa21.02■□□□□ 0.96
CDH3-205ENST00000566808 TBC1D2Q9BYX2 928 aa21.02■□□□□ 0.96
CDH3-205ENST00000566808 GNL3LQ9NVN8 582 aaKnown RBP21.02■□□□□ 0.96
CDH3-205ENST00000566808 MORF4L1Q9UBU8 362 aa21.02■□□□□ 0.96
CDH3-205ENST00000566808 SEMA3EO15041 775 aa21.01■□□□□ 0.95
CDH3-205ENST00000566808 XRCC5P13010 732 aaKnown RBP21.01■□□□□ 0.95
CDH3-205ENST00000566808 LRRC26Q2I0M4 334 aa21.01■□□□□ 0.95
CDH3-205ENST00000566808 WDR63Q8IWG1 891 aa21.01■□□□□ 0.95
CDH3-205ENST00000566808 FAM161BQ96MY7 647 aa21.01■□□□□ 0.95
CDH3-205ENST00000566808 ASCC2Q9H1I8 757 aaPredicted RBP21.01■□□□□ 0.95
CDH3-205ENST00000566808 EYA2O00167 538 aa21■□□□□ 0.95
CDH3-205ENST00000566808 TRMT44Q8IYL2 757 aaKnown RBP21■□□□□ 0.95
CDH3-205ENST00000566808 ZGPATQ8N5A5 531 aaKnown RBP21■□□□□ 0.95
CDH3-205ENST00000566808 ZNF280CQ8ND82 737 aa21■□□□□ 0.95
CDH3-205ENST00000566808 LBHD1Q9BQE6 289 aaPredicted RBP21■□□□□ 0.95
CDH3-205ENST00000566808 TBC1D12O60347 775 aa20.99■□□□□ 0.95
CDH3-205ENST00000566808 SLURP2P0DP57 97 aa20.99■□□□□ 0.95
CDH3-205ENST00000566808 ZKSCAN1P17029 563 aaPredicted RBP20.99■□□□□ 0.95
CDH3-205ENST00000566808 CYP2B6P20813 491 aa20.99■□□□□ 0.95
CDH3-205ENST00000566808 HMGCS2P54868 508 aa20.99■□□□□ 0.95
CDH3-205ENST00000566808 SPP2Q13103 211 aa20.99■□□□□ 0.95
CDH3-205ENST00000566808 OSBPL5Q9H0X9 879 aaPredicted RBP20.99■□□□□ 0.95
CDH3-205ENST00000566808 DDX4Q9NQI0 724 aaKnown RBP20.99■□□□□ 0.95
CDH3-205ENST00000566808 DENND2AQ9ULE3 1009 aa20.99■□□□□ 0.95
CDH3-205ENST00000566808 PICALMQ13492 652 aa20.98■□□□□ 0.95
CDH3-205ENST00000566808 DZIP1Q86YF9 867 aaKnown RBP20.98■□□□□ 0.95
CDH3-205ENST00000566808 SLF2Q8IX21 1173 aa20.98■□□□□ 0.95
CDH3-205ENST00000566808 MAFAQ8NHW3 353 aaPredicted RBP20.98■□□□□ 0.95
CDH3-205ENST00000566808 NUDT12Q9BQG2 462 aa20.98■□□□□ 0.95
CDH3-205ENST00000566808 ZBTB22O15209 634 aa20.97■□□□□ 0.95
CDH3-205ENST00000566808 ATP2B3Q16720 1220 aa20.97■□□□□ 0.95
CDH3-205ENST00000566808 IRX3P78415 501 aaPredicted RBP20.96■□□□□ 0.95
CDH3-205ENST00000566808 PDE3AQ14432 1141 aa20.96■□□□□ 0.95
CDH3-205ENST00000566808 SH3D19Q5HYK7 790 aa20.96■□□□□ 0.95
CDH3-205ENST00000566808 XPO5Q9HAV4 1204 aaKnown RBP eCLIP20.96■□□□□ 0.95
CDH3-205ENST00000566808 BTDP43251 543 aa20.95■□□□□ 0.94
CDH3-205ENST00000566808 RFX5P48382 616 aaPredicted RBP20.95■□□□□ 0.94
CDH3-205ENST00000566808 CACNB2Q08289 660 aaPredicted RBP20.95■□□□□ 0.94
CDH3-205ENST00000566808 LHX8Q68G74 356 aa20.95■□□□□ 0.94
CDH3-205ENST00000566808 FAM163AQ96GL9 167 aaPredicted RBP20.95■□□□□ 0.94
CDH3-205ENST00000566808 CDX2Q99626 313 aaPredicted RBP20.95■□□□□ 0.94
CDH3-205ENST00000566808 MROH7-TTC4A0A0A0MT08 1334 aa20.95■□□□□ 0.94
CDH3-205ENST00000566808 NCOR1O75376 2440 aa20.94■□□□□ 0.94
CDH3-205ENST00000566808 FAM196BA6NMK8 535 aa20.94■□□□□ 0.94
CDH3-205ENST00000566808 NPM3O75607 178 aaKnown RBP20.94■□□□□ 0.94
CDH3-205ENST00000566808 PHKA1P46020 1223 aa20.94■□□□□ 0.94
CDH3-205ENST00000566808 ATG9AQ7Z3C6 839 aa20.94■□□□□ 0.94
CDH3-205ENST00000566808 PDS5AQ29RF7 1337 aaKnown RBP20.94■□□□□ 0.94
CDH3-205ENST00000566808 SIPA1L1O43166 1804 aa20.93■□□□□ 0.94
CDH3-205ENST00000566808 USP17L5A8MUK1 530 aa20.93■□□□□ 0.94
CDH3-205ENST00000566808 CCND3P30281 292 aaPredicted RBP20.93■□□□□ 0.94
CDH3-205ENST00000566808 MAPK4P31152 587 aa20.93■□□□□ 0.94
CDH3-205ENST00000566808 GPRC5AQ8NFJ5 357 aa20.93■□□□□ 0.94
CDH3-205ENST00000566808 SYMPKQ92797 1274 aaKnown RBP20.93■□□□□ 0.94
CDH3-205ENST00000566808 APBA2Q99767 749 aa20.93■□□□□ 0.94
CDH3-205ENST00000566808 AS3MTQ9HBK9 375 aa20.93■□□□□ 0.94
CDH3-205ENST00000566808 FBXO3Q9UK99 471 aa20.93■□□□□ 0.94
CDH3-205ENST00000566808 RLFQ13129 1914 aa20.92■□□□□ 0.94
CDH3-205ENST00000566808 CAP2P40123 477 aa20.92■□□□□ 0.94
CDH3-205ENST00000566808 RGS2P41220 211 aa20.92■□□□□ 0.94
CDH3-205ENST00000566808 USP6NLQ92738 828 aa20.92■□□□□ 0.94
CDH3-205ENST00000566808 CIAO1O76071 339 aa20.91■□□□□ 0.94
CDH3-205ENST00000566808 RHBDL3P58872 404 aa20.91■□□□□ 0.94
CDH3-205ENST00000566808 HERVK_113P62684 666 aa20.91■□□□□ 0.94
CDH3-205ENST00000566808 SPTY2D1Q68D10 685 aaPredicted RBP20.91■□□□□ 0.94
CDH3-205ENST00000566808 TXNRD2Q9NNW7 524 aa20.91■□□□□ 0.94
CDH3-205ENST00000566808 CEP126Q9P2H0 1117 aa20.91■□□□□ 0.94
CDH3-205ENST00000566808 PRKAG2Q9UGJ0 569 aa20.91■□□□□ 0.94
CDH3-205ENST00000566808 HOXA7P31268 230 aaPredicted RBP20.9■□□□□ 0.94
CDH3-205ENST00000566808 MTMR2Q13614 643 aa20.9■□□□□ 0.94
CDH3-205ENST00000566808 RASGRF1Q13972 1273 aa20.9■□□□□ 0.94
CDH3-205ENST00000566808 USP44Q9H0E7 712 aa20.9■□□□□ 0.94
CDH3-205ENST00000566808 TMOD4Q9NZQ9 345 aa20.9■□□□□ 0.94
CDH3-205ENST00000566808 ABCF2Q9UG63 623 aa20.9■□□□□ 0.94
CDH3-205ENST00000566808 PTPRCP08575 1304 aa20.89■□□□□ 0.93
CDH3-205ENST00000566808 BDP1A6H8Y1 2624 aa20.89■□□□□ 0.93
CDH3-205ENST00000566808 GPR75-ASB3A0A0A6YYF3 556 aa20.89■□□□□ 0.93
CDH3-205ENST00000566808 MAP4K4O95819 1239 aaPredicted RBP20.89■□□□□ 0.93
CDH3-205ENST00000566808 CCL14Q16627 93 aa20.89■□□□□ 0.93
CDH3-205ENST00000566808 CCDC184Q52MB2 194 aa20.89■□□□□ 0.93
CDH3-205ENST00000566808 CCDC102BQ68D86 513 aa20.89■□□□□ 0.93
CDH3-205ENST00000566808 CCAR1Q8IX12 1150 aaKnown RBP20.89■□□□□ 0.93
CDH3-205ENST00000566808 GTF3C2Q8WUA4 911 aaPredicted RBP20.89■□□□□ 0.93
CDH3-205ENST00000566808 WDR18Q9BV38 432 aa20.89■□□□□ 0.93
CDH3-205ENST00000566808 SENP6Q9GZR1 1112 aaPredicted RBP20.89■□□□□ 0.93
CDH3-205ENST00000566808 SEMA6BQ9H3T3 888 aa20.89■□□□□ 0.93
CDH3-205ENST00000566808 HERC5Q9UII4 1024 aaKnown RBP20.89■□□□□ 0.93
CDH3-205ENST00000566808 BACE1P56817 501 aa20.88■□□□□ 0.93
CDH3-205ENST00000566808 ERVK-9P63128 1117 aa20.88■□□□□ 0.93
CDH3-205ENST00000566808 ERVK-24P63145 666 aa20.88■□□□□ 0.93
CDH3-205ENST00000566808 MORN1Q5T089 497 aa20.88■□□□□ 0.93
CDH3-205ENST00000566808 GPR142Q7Z601 462 aa20.88■□□□□ 0.93
CDH3-205ENST00000566808 P2RX7Q99572 595 aaKnown RBP20.88■□□□□ 0.93
CDH3-205ENST00000566808 SIL1Q9H173 461 aa20.88■□□□□ 0.93
CDH3-205ENST00000566808 SALL2Q9Y467 1007 aaPredicted RBP20.88■□□□□ 0.93
CDH3-205ENST00000566808 MSCO60682 206 aa20.87■□□□□ 0.93
CDH3-205ENST00000566808 FOSL2P15408 326 aa20.87■□□□□ 0.93
CDH3-205ENST00000566808 SMAD3P84022 425 aaKnown RBP20.87■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms