RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 DOCK2Q92608 1830 aa25.22■■□□□ 1.63
CLN3-219ENST00000565778 TRIM75PA6NK02 468 aa25.22■■□□□ 1.63
CLN3-219ENST00000565778 CAP1Q01518 475 aa25.22■■□□□ 1.63
CLN3-219ENST00000565778 FOXP4Q8IVH2 680 aaPredicted RBP25.22■■□□□ 1.63
CLN3-219ENST00000565778 FRMD4AQ9P2Q2 1039 aaPredicted RBP25.22■■□□□ 1.63
CLN3-219ENST00000565778 CPA4Q9UI42 421 aa25.22■■□□□ 1.63
CLN3-219ENST00000565778 PALD1Q9ULE6 856 aa25.22■■□□□ 1.63
CLN3-219ENST00000565778 COL2A1P02458 1487 aaPredicted RBP25.21■■□□□ 1.63
CLN3-219ENST00000565778 FLT1P17948 1338 aa25.21■■□□□ 1.63
CLN3-219ENST00000565778 A0A0G2JLL6 359 aaPredicted RBP25.21■■□□□ 1.63
CLN3-219ENST00000565778 CAP2P40123 477 aa25.21■■□□□ 1.63
CLN3-219ENST00000565778 GPAT2Q6NUI2 795 aa25.21■■□□□ 1.63
CLN3-219ENST00000565778 C17orf99Q6UX52 265 aa25.21■■□□□ 1.63
CLN3-219ENST00000565778 PRRT2Q7Z6L0 340 aaPredicted RBP25.21■■□□□ 1.63
CLN3-219ENST00000565778 CCDC84Q86UT8 332 aaPredicted RBP25.21■■□□□ 1.63
CLN3-219ENST00000565778 CERS3Q8IU89 383 aa25.21■■□□□ 1.63
CLN3-219ENST00000565778 CRACR2BQ8N4Y2 399 aaPredicted RBP25.21■■□□□ 1.63
CLN3-219ENST00000565778 DNAJC2Q99543 621 aaKnown RBP25.21■■□□□ 1.63
CLN3-219ENST00000565778 TRIM34Q9BYJ4 488 aa25.21■■□□□ 1.63
CLN3-219ENST00000565778 SAP30BPQ9UHR5 308 aaKnown RBP25.21■■□□□ 1.63
CLN3-219ENST00000565778 USP5P45974 858 aa25.2■■□□□ 1.62
CLN3-219ENST00000565778 TMED8Q6PL24 325 aaPredicted RBP25.2■■□□□ 1.62
CLN3-219ENST00000565778 GOLIM4O00461 696 aa25.19■■□□□ 1.62
CLN3-219ENST00000565778 ECM2O94769 699 aaPredicted RBP25.19■■□□□ 1.62
CLN3-219ENST00000565778 LACTBP83111 547 aaPredicted RBP25.19■■□□□ 1.62
CLN3-219ENST00000565778 SLC9C2Q5TAH2 1124 aa25.19■■□□□ 1.62
CLN3-219ENST00000565778 PPIL4Q8WUA2 492 aaKnown RBP eCLIP25.19■■□□□ 1.62
CLN3-219ENST00000565778 LRRCC1Q9C099 1032 aa25.19■■□□□ 1.62
CLN3-219ENST00000565778 HLA-DOAP06340 250 aa25.18■■□□□ 1.62
CLN3-219ENST00000565778 CYP2C8P10632 490 aa25.18■■□□□ 1.62
CLN3-219ENST00000565778 SPP2Q13103 211 aa25.18■■□□□ 1.62
CLN3-219ENST00000565778 RRP1BQ14684 758 aaKnown RBP25.18■■□□□ 1.62
CLN3-219ENST00000565778 PARK7Q99497 189 aaKnown RBP25.18■■□□□ 1.62
CLN3-219ENST00000565778 USP17L5A8MUK1 530 aa25.17■■□□□ 1.62
CLN3-219ENST00000565778 SLC4A8Q2Y0W8 1093 aa25.17■■□□□ 1.62
CLN3-219ENST00000565778 ARHGAP39Q9C0H5 1083 aa25.17■■□□□ 1.62
CLN3-219ENST00000565778 BOLA2Q9H3K6 86 aa25.17■■□□□ 1.62
CLN3-219ENST00000565778 MAGEB6P1A0A0J9YX57 407 aa25.16■■□□□ 1.62
CLN3-219ENST00000565778 ZNF280CQ8ND82 737 aa25.16■■□□□ 1.62
CLN3-219ENST00000565778 TBC1D2Q9BYX2 928 aa25.16■■□□□ 1.62
CLN3-219ENST00000565778 MYO5AQ9Y4I1 1855 aaKnown RBP25.16■■□□□ 1.62
CLN3-219ENST00000565778 SMARCA5O60264 1052 aaPredicted RBP25.15■■□□□ 1.62
CLN3-219ENST00000565778 PDE6AP16499 860 aa25.15■■□□□ 1.62
CLN3-219ENST00000565778 ATP5JP18859 108 aa25.15■■□□□ 1.62
CLN3-219ENST00000565778 METTL16Q86W50 562 aaKnown RBP25.15■■□□□ 1.62
CLN3-219ENST00000565778 EDC3Q96F86 508 aaKnown RBP25.15■■□□□ 1.62
CLN3-219ENST00000565778 AS3MTQ9HBK9 375 aa25.15■■□□□ 1.62
CLN3-219ENST00000565778 MAST2Q6P0Q8 1798 aa25.15■■□□□ 1.62
CLN3-219ENST00000565778 FMNL1O95466 1100 aaPredicted RBP25.14■■□□□ 1.62
CLN3-219ENST00000565778 GNRH1P01148 92 aa25.14■■□□□ 1.62
CLN3-219ENST00000565778 PSMC4P43686 418 aa25.14■■□□□ 1.62
CLN3-219ENST00000565778 YTHDC1Q96MU7 727 aaKnown RBP25.14■■□□□ 1.62
CLN3-219ENST00000565778 PAG1Q9NWQ8 432 aa25.14■■□□□ 1.62
CLN3-219ENST00000565778 SLC45A1Q9Y2W3 748 aa25.14■■□□□ 1.62
CLN3-219ENST00000565778 PTCH2Q9Y6C5 1203 aa25.14■■□□□ 1.62
CLN3-219ENST00000565778 ASNSP08243 561 aa25.13■■□□□ 1.61
CLN3-219ENST00000565778 NBPF11Q86T75 865 aa25.13■■□□□ 1.61
CLN3-219ENST00000565778 RIOK1Q9BRS2 568 aaKnown RBP25.13■■□□□ 1.61
CLN3-219ENST00000565778 AGTPBP1Q9UPW5 1226 aa25.13■■□□□ 1.61
CLN3-219ENST00000565778 ADGRA2Q96PE1 1338 aa25.12■■□□□ 1.61
CLN3-219ENST00000565778 ZNF532Q9HCE3 1301 aa25.12■■□□□ 1.61
CLN3-219ENST00000565778 HOXD10P28358 340 aa25.12■■□□□ 1.61
CLN3-219ENST00000565778 TTC6Q86TZ1 520 aa25.12■■□□□ 1.61
CLN3-219ENST00000565778 DCTPP1Q9H773 170 aa25.12■■□□□ 1.61
CLN3-219ENST00000565778 DNAJC18Q9H819 358 aa25.12■■□□□ 1.61
CLN3-219ENST00000565778 DOCK1Q14185 1865 aa25.11■■□□□ 1.61
CLN3-219ENST00000565778 GDF11O95390 407 aa25.11■■□□□ 1.61
CLN3-219ENST00000565778 HMGCS2P54868 508 aa25.11■■□□□ 1.61
CLN3-219ENST00000565778 SLC9C1Q4G0N8 1177 aa25.11■■□□□ 1.61
CLN3-219ENST00000565778 PROCA1Q8NCQ7 364 aaPredicted RBP25.11■■□□□ 1.61
CLN3-219ENST00000565778 SMCR8Q8TEV9 937 aaPredicted RBP25.11■■□□□ 1.61
CLN3-219ENST00000565778 HAUS7Q99871 368 aa25.11■■□□□ 1.61
CLN3-219ENST00000565778 CRNKL1Q9BZJ0 848 aaKnown RBP25.11■■□□□ 1.61
CLN3-219ENST00000565778 BCRP11274 1271 aa25.1■■□□□ 1.61
CLN3-219ENST00000565778 PRMT2P55345 433 aa25.1■■□□□ 1.61
CLN3-219ENST00000565778 JAG1P78504 1218 aa25.1■■□□□ 1.61
CLN3-219ENST00000565778 TREML2Q5T2D2 321 aa25.1■■□□□ 1.61
CLN3-219ENST00000565778 ARMC5Q96C12 935 aa25.1■■□□□ 1.61
CLN3-219ENST00000565778 TRIM47Q96LD4 638 aa25.1■■□□□ 1.61
CLN3-219ENST00000565778 WDR18Q9BV38 432 aa25.1■■□□□ 1.61
CLN3-219ENST00000565778 GINM1Q9NU53 330 aa25.1■■□□□ 1.61
CLN3-219ENST00000565778 TCRBV5S4A2TA0A5A2 114 aa25.09■■□□□ 1.61
CLN3-219ENST00000565778 POLR3DP05423 398 aaPredicted RBP25.09■■□□□ 1.61
CLN3-219ENST00000565778 CTGFP29279 349 aa25.09■■□□□ 1.61
CLN3-219ENST00000565778 PABPC4Q13310 644 aaKnown RBP eCLIP25.09■■□□□ 1.61
CLN3-219ENST00000565778 DDX24Q9GZR7 859 aaKnown RBP eCLIP25.09■■□□□ 1.613e-6■■■■■ 42.3
CLN3-219ENST00000565778 SERPINB13Q9UIV8 391 aa25.09■■□□□ 1.61
CLN3-219ENST00000565778 PNMA3Q9UL41 463 aa25.09■■□□□ 1.61
CLN3-219ENST00000565778 RRP1P56182 461 aaKnown RBP25.08■■□□□ 1.61
CLN3-219ENST00000565778 SH3D19Q5HYK7 790 aa25.08■■□□□ 1.61
CLN3-219ENST00000565778 TMOD4Q9NZQ9 345 aa25.08■■□□□ 1.61
CLN3-219ENST00000565778 SRRDQ9UH36 339 aa25.08■■□□□ 1.61
CLN3-219ENST00000565778 OSBPP22059 807 aa25.07■■□□□ 1.6
CLN3-219ENST00000565778 FCGRTP55899 365 aa25.07■■□□□ 1.6
CLN3-219ENST00000565778 BACE1P56817 501 aa25.07■■□□□ 1.6
CLN3-219ENST00000565778 SHROOM1Q2M3G4 852 aaPredicted RBP25.07■■□□□ 1.6
CLN3-219ENST00000565778 TMEM106CQ9BVX2 250 aa25.07■■□□□ 1.6
CLN3-219ENST00000565778 EHD4Q9H223 541 aa25.07■■□□□ 1.6
CLN3-219ENST00000565778 ECHDC1Q9NTX5 307 aa25.07■■□□□ 1.6
CLN3-219ENST00000565778 ZBTB21Q9ULJ3 1066 aa25.07■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms