RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 HMGCS2P54868 508 aa9.13□□□□□ -0.95
VPS4A-203ENST00000564399 MAP3K10Q02779 954 aa9.13□□□□□ -0.95
VPS4A-203ENST00000564399 ATP2B3Q16720 1220 aa9.13□□□□□ -0.95
VPS4A-203ENST00000564399 CCDC184Q52MB2 194 aa9.13□□□□□ -0.95
VPS4A-203ENST00000564399 ZNF697Q5TEC3 545 aa9.13□□□□□ -0.95
VPS4A-203ENST00000564399 FAM109BQ6ICB4 259 aaPredicted RBP9.13□□□□□ -0.95
VPS4A-203ENST00000564399 CCAR1Q8IX12 1150 aaKnown RBP9.13□□□□□ -0.95
VPS4A-203ENST00000564399 SLF2Q8IX21 1173 aa9.13□□□□□ -0.95
VPS4A-203ENST00000564399 ZGPATQ8N5A5 531 aaKnown RBP9.13□□□□□ -0.95
VPS4A-203ENST00000564399 ZNF280CQ8ND82 737 aa9.13□□□□□ -0.95
VPS4A-203ENST00000564399 GUCD1Q96NT3 240 aa9.13□□□□□ -0.95
VPS4A-203ENST00000564399 LBHD1Q9BQE6 289 aaPredicted RBP9.13□□□□□ -0.95
VPS4A-203ENST00000564399 NUDT12Q9BQG2 462 aa9.13□□□□□ -0.95
VPS4A-203ENST00000564399 ASCC2Q9H1I8 757 aaPredicted RBP9.13□□□□□ -0.95
VPS4A-203ENST00000564399 DDX4Q9NQI0 724 aaKnown RBP9.13□□□□□ -0.95
VPS4A-203ENST00000564399 ABCF2Q9UG63 623 aa9.13□□□□□ -0.95
VPS4A-203ENST00000564399 NCOR1O75376 2440 aa9.13□□□□□ -0.95
VPS4A-203ENST00000564399 SALL1Q9NSC2 1324 aa9.12□□□□□ -0.95
VPS4A-203ENST00000564399 ZKSCAN1P17029 563 aaPredicted RBP9.12□□□□□ -0.95
VPS4A-203ENST00000564399 BTDP43251 543 aa9.12□□□□□ -0.95
VPS4A-203ENST00000564399 PHKA1P46020 1223 aa9.12□□□□□ -0.95
VPS4A-203ENST00000564399 IRX3P78415 501 aaPredicted RBP9.12□□□□□ -0.95
VPS4A-203ENST00000564399 PDE3AQ14432 1141 aa9.12□□□□□ -0.95
VPS4A-203ENST00000564399 LRRC26Q2I0M4 334 aa9.12□□□□□ -0.95
VPS4A-203ENST00000564399 OSBPL5Q9H0X9 879 aaPredicted RBP9.12□□□□□ -0.95
VPS4A-203ENST00000564399 SIL1Q9H173 461 aa9.12□□□□□ -0.95
VPS4A-203ENST00000564399 CEP126Q9P2H0 1117 aa9.12□□□□□ -0.95
VPS4A-203ENST00000564399 UNC80Q8N2C7 3258 aa9.12□□□□□ -0.95
VPS4A-203ENST00000564399 LOC285556D6RIA3 1793 aa9.12□□□□□ -0.95
VPS4A-203ENST00000564399 GAKO14976 1311 aa9.11□□□□□ -0.95
VPS4A-203ENST00000564399 USP17L5A8MUK1 530 aa9.11□□□□□ -0.95
VPS4A-203ENST00000564399 SEMA3EO15041 775 aa9.11□□□□□ -0.95
VPS4A-203ENST00000564399 TBC1D12O60347 775 aa9.11□□□□□ -0.95
VPS4A-203ENST00000564399 COL6A1P12109 1028 aa9.11□□□□□ -0.95
VPS4A-203ENST00000564399 CACNB2Q08289 660 aaPredicted RBP9.11□□□□□ -0.95
VPS4A-203ENST00000564399 MAP3K21Q5TCX8 1036 aa9.11□□□□□ -0.95
VPS4A-203ENST00000564399 ATG9AQ7Z3C6 839 aa9.11□□□□□ -0.95
VPS4A-203ENST00000564399 TRMT44Q8IYL2 757 aaKnown RBP9.11□□□□□ -0.95
VPS4A-203ENST00000564399 SOCS4Q8WXH5 440 aa9.11□□□□□ -0.95
VPS4A-203ENST00000564399 AS3MTQ9HBK9 375 aa9.11□□□□□ -0.95
VPS4A-203ENST00000564399 PRKAG2Q9UGJ0 569 aa9.11□□□□□ -0.95
VPS4A-203ENST00000564399 RFX7Q2KHR2 1363 aa9.11□□□□□ -0.95
VPS4A-203ENST00000564399 PEX10O60683 326 aa9.1□□□□□ -0.95
VPS4A-203ENST00000564399 XRCC5P13010 732 aaKnown RBP9.1□□□□□ -0.95
VPS4A-203ENST00000564399 CCND3P30281 292 aaPredicted RBP9.1□□□□□ -0.95
VPS4A-203ENST00000564399 CAP2P40123 477 aa9.1□□□□□ -0.95
VPS4A-203ENST00000564399 RFX5P48382 616 aaPredicted RBP9.1□□□□□ -0.95
VPS4A-203ENST00000564399 SPTY2D1Q68D10 685 aaPredicted RBP9.1□□□□□ -0.95
VPS4A-203ENST00000564399 GPRC5AQ8NFJ5 357 aa9.1□□□□□ -0.95
VPS4A-203ENST00000564399 MAFAQ8NHW3 353 aaPredicted RBP9.1□□□□□ -0.95
VPS4A-203ENST00000564399 P2RX7Q99572 595 aaKnown RBP9.1□□□□□ -0.95
VPS4A-203ENST00000564399 CDX2Q99626 313 aaPredicted RBP9.1□□□□□ -0.95
VPS4A-203ENST00000564399 TBC1D2Q9BYX2 928 aa9.1□□□□□ -0.95
VPS4A-203ENST00000564399 SENP6Q9GZR1 1112 aaPredicted RBP9.1□□□□□ -0.95
VPS4A-203ENST00000564399 USP44Q9H0E7 712 aa9.1□□□□□ -0.95
VPS4A-203ENST00000564399 CWC22Q9HCG8 908 aaKnown RBP9.1□□□□□ -0.95
VPS4A-203ENST00000564399 PRDM6Q9NQX0 595 aa9.1□□□□□ -0.95
VPS4A-203ENST00000564399 TMOD4Q9NZQ9 345 aa9.1□□□□□ -0.95
VPS4A-203ENST00000564399 MORF4L1Q9UBU8 362 aa9.1□□□□□ -0.95
VPS4A-203ENST00000564399 MROH7-TTC4A0A0A0MT08 1334 aa9.09□□□□□ -0.95
VPS4A-203ENST00000564399 MAPK4P31152 587 aa9.09□□□□□ -0.95
VPS4A-203ENST00000564399 RGS2P41220 211 aa9.09□□□□□ -0.95
VPS4A-203ENST00000564399 ATN1P54259 1190 aaPredicted RBP9.09□□□□□ -0.95
VPS4A-203ENST00000564399 MTMR2Q13614 643 aa9.09□□□□□ -0.95
VPS4A-203ENST00000564399 CCL14Q16627 93 aa9.09□□□□□ -0.95
VPS4A-203ENST00000564399 SH3D19Q5HYK7 790 aa9.09□□□□□ -0.95
VPS4A-203ENST00000564399 CCDC102BQ68D86 513 aa9.09□□□□□ -0.95
VPS4A-203ENST00000564399 LHX8Q68G74 356 aa9.09□□□□□ -0.95
VPS4A-203ENST00000564399 ERICH6Q7L0X2 663 aa9.09□□□□□ -0.95
VPS4A-203ENST00000564399 FAM163AQ96GL9 167 aaPredicted RBP9.09□□□□□ -0.95
VPS4A-203ENST00000564399 PAGR1Q9BTK6 254 aa9.09□□□□□ -0.95
VPS4A-203ENST00000564399 FRMPD3Q5JV73 1810 aa9.08□□□□□ -0.96
VPS4A-203ENST00000564399 GPR75-ASB3A0A0A6YYF3 556 aa9.08□□□□□ -0.96
VPS4A-203ENST00000564399 CIAO1O76071 339 aa9.08□□□□□ -0.96
VPS4A-203ENST00000564399 LDHCP07864 332 aa9.08□□□□□ -0.96
VPS4A-203ENST00000564399 CNGA1P29973 690 aa9.08□□□□□ -0.96
VPS4A-203ENST00000564399 ADORA1P30542 326 aa9.08□□□□□ -0.96
VPS4A-203ENST00000564399 RHBDL3P58872 404 aa9.08□□□□□ -0.96
VPS4A-203ENST00000564399 HERVK_113P62684 666 aa9.08□□□□□ -0.96
VPS4A-203ENST00000564399 MECOMQ03112 1051 aa9.08□□□□□ -0.96
VPS4A-203ENST00000564399 RASGRF1Q13972 1273 aa9.08□□□□□ -0.96
VPS4A-203ENST00000564399 PLEKHH3Q7Z736 793 aa9.08□□□□□ -0.96
VPS4A-203ENST00000564399 SEMA6BQ9H3T3 888 aa9.08□□□□□ -0.96
VPS4A-203ENST00000564399 MRS2Q9HD23 443 aa9.08□□□□□ -0.96
VPS4A-203ENST00000564399 TXNRD2Q9NNW7 524 aa9.08□□□□□ -0.96
VPS4A-203ENST00000564399 FBXO3Q9UK99 471 aa9.08□□□□□ -0.96
VPS4A-203ENST00000564399 HOXA7P31268 230 aaPredicted RBP9.07□□□□□ -0.96
VPS4A-203ENST00000564399 IL15P40933 162 aaPredicted RBP9.07□□□□□ -0.96
VPS4A-203ENST00000564399 BACE1P56817 501 aa9.07□□□□□ -0.96
VPS4A-203ENST00000564399 ERVK-9P63128 1117 aa9.07□□□□□ -0.96
VPS4A-203ENST00000564399 ERVK-24P63145 666 aa9.07□□□□□ -0.96
VPS4A-203ENST00000564399 GSTO1P78417 241 aa9.07□□□□□ -0.96
VPS4A-203ENST00000564399 RRP1BQ14684 758 aaKnown RBP9.07□□□□□ -0.96
VPS4A-203ENST00000564399 Q3C1V9 767 aa9.07□□□□□ -0.96
VPS4A-203ENST00000564399 WDR78Q5VTH9 848 aa9.07□□□□□ -0.96
VPS4A-203ENST00000564399 MFSD14CQ5VZR4 134 aa9.07□□□□□ -0.96
VPS4A-203ENST00000564399 GPR142Q7Z601 462 aa9.07□□□□□ -0.96
VPS4A-203ENST00000564399 TEX11Q8IYF3 940 aa9.07□□□□□ -0.96
VPS4A-203ENST00000564399 MRPL50Q8N5N7 158 aaKnown RBP9.07□□□□□ -0.96
VPS4A-203ENST00000564399 MYLIPQ8WY64 445 aa9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms