RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 ZNF532Q9HCE3 1301 aa16.19■□□□□ 0.18
CLK3-213ENST00000563842 CCL15-CCL14A0A0B4J2E2 113 aa16.19■□□□□ 0.18
CLK3-213ENST00000563842 ADD2P35612 726 aa16.19■□□□□ 0.18
CLK3-213ENST00000563842 CCL15Q16663 113 aa16.19■□□□□ 0.18
CLK3-213ENST00000563842 LRRFIP1Q32MZ4 808 aaKnown RBP16.19■□□□□ 0.18
CLK3-213ENST00000563842 CNKSR2Q8WXI2 1034 aa16.19■□□□□ 0.18
CLK3-213ENST00000563842 EDC3Q96F86 508 aaKnown RBP16.19■□□□□ 0.18
CLK3-213ENST00000563842 ABHD8Q96I13 439 aa16.19■□□□□ 0.18
CLK3-213ENST00000563842 CRNKL1Q9BZJ0 848 aaKnown RBP16.19■□□□□ 0.18
CLK3-213ENST00000563842 NAV1Q8NEY1 1877 aa16.18■□□□□ 0.18
CLK3-213ENST00000563842 PTPRFP10586 1907 aa16.18■□□□□ 0.18
CLK3-213ENST00000563842 SIPA1L1O43166 1804 aa16.18■□□□□ 0.18
CLK3-213ENST00000563842 PHIPQ8WWQ0 1821 aa16.18■□□□□ 0.18
CLK3-213ENST00000563842 IRF6O14896 467 aa16.18■□□□□ 0.18
CLK3-213ENST00000563842 TBC1D8O95759 1140 aa16.18■□□□□ 0.18
CLK3-213ENST00000563842 UBE3CQ15386 1083 aa16.18■□□□□ 0.18
CLK3-213ENST00000563842 TTC6Q86TZ1 520 aa16.18■□□□□ 0.18
CLK3-213ENST00000563842 CRACR2BQ8N4Y2 399 aaPredicted RBP16.18■□□□□ 0.18
CLK3-213ENST00000563842 EXOC6Q8TAG9 804 aa16.18■□□□□ 0.18
CLK3-213ENST00000563842 ZCCHC17Q9NP64 241 aaKnown RBP16.18■□□□□ 0.18
CLK3-213ENST00000563842 TCRBV5S4A2TA0A5A2 114 aa16.17■□□□□ 0.18
CLK3-213ENST00000563842 IGF2BP3O00425 579 aaKnown RBP eCLIP16.17■□□□□ 0.18
CLK3-213ENST00000563842 CXCL11O14625 94 aa16.17■□□□□ 0.18
CLK3-213ENST00000563842 GLRX3O76003 335 aaKnown RBP16.17■□□□□ 0.18
CLK3-213ENST00000563842 BRI3BPQ8WY22 251 aa16.17■□□□□ 0.18
CLK3-213ENST00000563842 RIOK1Q9BRS2 568 aaKnown RBP16.17■□□□□ 0.18
CLK3-213ENST00000563842 TBC1D2Q9BYX2 928 aa16.17■□□□□ 0.18
CLK3-213ENST00000563842 PALD1Q9ULE6 856 aa16.17■□□□□ 0.18
CLK3-213ENST00000563842 KCNH4Q9UQ05 1017 aa16.17■□□□□ 0.18
CLK3-213ENST00000563842 MYH8P13535 1937 aa16.17■□□□□ 0.18
CLK3-213ENST00000563842 BAZ2AQ9UIF9 1905 aaKnown RBP16.16■□□□□ 0.18
CLK3-213ENST00000563842 GPR25O00155 361 aa16.16■□□□□ 0.18
CLK3-213ENST00000563842 PTPRAP18433 802 aa16.16■□□□□ 0.18
CLK3-213ENST00000563842 MX1P20591 662 aa16.16■□□□□ 0.18
CLK3-213ENST00000563842 METTL16Q86W50 562 aaKnown RBP16.16■□□□□ 0.18
CLK3-213ENST00000563842 KBTBD3Q8NAB2 608 aa16.16■□□□□ 0.18
CLK3-213ENST00000563842 PTPN18Q99952 460 aa16.16■□□□□ 0.18
CLK3-213ENST00000563842 GINM1Q9NU53 330 aa16.16■□□□□ 0.18
CLK3-213ENST00000563842 ZHX2Q9Y6X8 837 aa16.16■□□□□ 0.18
CLK3-213ENST00000563842 FKTNO75072 461 aa16.15■□□□□ 0.18
CLK3-213ENST00000563842 ZFYP08048 801 aaPredicted RBP16.15■□□□□ 0.18
CLK3-213ENST00000563842 CAP2P40123 477 aa16.15■□□□□ 0.18
CLK3-213ENST00000563842 DDRGK1Q96HY6 314 aa16.15■□□□□ 0.18
CLK3-213ENST00000563842 ZFYVE28Q9HCC9 887 aa16.15■□□□□ 0.18
CLK3-213ENST00000563842 SAP30BPQ9UHR5 308 aaKnown RBP16.15■□□□□ 0.18
CLK3-213ENST00000563842 FAM196BA6NMK8 535 aa16.14■□□□□ 0.17
CLK3-213ENST00000563842 POLR3DP05423 398 aaPredicted RBP16.14■□□□□ 0.17
CLK3-213ENST00000563842 TAF1CQ15572 869 aaPredicted RBP16.14■□□□□ 0.17
CLK3-213ENST00000563842 FASTKD5Q7L8L6 764 aaKnown RBP16.14■□□□□ 0.17
CLK3-213ENST00000563842 SMC5Q8IY18 1101 aa16.14■□□□□ 0.17
CLK3-213ENST00000563842 ZNF296Q8WUU4 475 aaPredicted RBP16.14■□□□□ 0.17
CLK3-213ENST00000563842 EHD4Q9H223 541 aa16.14■□□□□ 0.17
CLK3-213ENST00000563842 MBD4O95243 580 aa16.13■□□□□ 0.17
CLK3-213ENST00000563842 ASNSP08243 561 aa16.13■□□□□ 0.17
CLK3-213ENST00000563842 CRHR2Q13324 411 aa16.13■□□□□ 0.17
CLK3-213ENST00000563842 TSHZ3Q63HK5 1081 aa16.13■□□□□ 0.17
CLK3-213ENST00000563842 ANKRD23Q86SG2 305 aa16.13■□□□□ 0.17
CLK3-213ENST00000563842 AMOTL1Q8IY63 956 aa16.13■□□□□ 0.17
CLK3-213ENST00000563842 LCORLQ8N3X6 602 aa16.13■□□□□ 0.17
CLK3-213ENST00000563842 AS3MTQ9HBK9 375 aa16.13■□□□□ 0.17
CLK3-213ENST00000563842 ATP8A2Q9NTI2 1148 aa16.13■□□□□ 0.17
CLK3-213ENST00000563842 SERPINB13Q9UIV8 391 aa16.13■□□□□ 0.17
CLK3-213ENST00000563842 TAOK2Q9UL54 1235 aa16.13■□□□□ 0.17
CLK3-213ENST00000563842 AFG3L2Q9Y4W6 797 aa16.13■□□□□ 0.17
CLK3-213ENST00000563842 DDX60LQ5H9U9 1706 aaKnown RBP16.13■□□□□ 0.17
CLK3-213ENST00000563842 USP17L5A8MUK1 530 aa16.12■□□□□ 0.17
CLK3-213ENST00000563842 BTBD19C9JJ37 291 aa16.12■□□□□ 0.17
CLK3-213ENST00000563842 SLURP2P0DP57 97 aa16.12■□□□□ 0.17
CLK3-213ENST00000563842 DGKZQ13574 1117 aa16.12■□□□□ 0.17
CLK3-213ENST00000563842 CTU1Q7Z7A3 348 aaKnown RBP16.12■□□□□ 0.17
CLK3-213ENST00000563842 FAM43AQ8N2R8 423 aa16.12■□□□□ 0.17
CLK3-213ENST00000563842 PI4K2BQ8TCG2 481 aa16.12■□□□□ 0.17
CLK3-213ENST00000563842 ARMT1Q9H993 441 aa16.12■□□□□ 0.17
CLK3-213ENST00000563842 MCM9Q9NXL9 1143 aa16.12■□□□□ 0.17
CLK3-213ENST00000563842 STAP2Q9UGK3 403 aa16.12■□□□□ 0.17
CLK3-213ENST00000563842 A0A0G2JLL6 359 aaPredicted RBP16.11■□□□□ 0.17
CLK3-213ENST00000563842 RNF113AO15541 343 aaKnown RBP16.11■□□□□ 0.17
CLK3-213ENST00000563842 PKN2Q16513 984 aaKnown RBP16.11■□□□□ 0.17
CLK3-213ENST00000563842 PRRT2Q7Z6L0 340 aaPredicted RBP16.11■□□□□ 0.17
CLK3-213ENST00000563842 ZNF280CQ8ND82 737 aa16.11■□□□□ 0.17
CLK3-213ENST00000563842 OTUD7AQ8TE49 926 aaPredicted RBP16.11■□□□□ 0.17
CLK3-213ENST00000563842 SDR42E1Q8WUS8 393 aa16.11■□□□□ 0.17
CLK3-213ENST00000563842 APPBP2Q92624 585 aa16.11■□□□□ 0.17
CLK3-213ENST00000563842 ERO1AQ96HE7 468 aa16.11■□□□□ 0.17
CLK3-213ENST00000563842 DCP1AQ9NPI6 582 aaPredicted RBP16.11■□□□□ 0.17
CLK3-213ENST00000563842 SALL3Q9BXA9 1300 aa16.11■□□□□ 0.17
CLK3-213ENST00000563842 IGHDP01880 384 aa16.1■□□□□ 0.17
CLK3-213ENST00000563842 PDE1AP54750 535 aa16.1■□□□□ 0.17
CLK3-213ENST00000563842 SP3Q02447 781 aa16.1■□□□□ 0.17
CLK3-213ENST00000563842 ARHGEF6Q15052 776 aa16.1■□□□□ 0.17
CLK3-213ENST00000563842 SLC4A8Q2Y0W8 1093 aa16.1■□□□□ 0.17
CLK3-213ENST00000563842 FSD1Q9BTV5 496 aa16.1■□□□□ 0.17
CLK3-213ENST00000563842 LNPKQ9C0E8 428 aa16.1■□□□□ 0.17
CLK3-213ENST00000563842 MCOLN1Q9GZU1 580 aa16.1■□□□□ 0.17
CLK3-213ENST00000563842 PUS7LQ9H0K6 701 aaKnown RBP16.1■□□□□ 0.17
CLK3-213ENST00000563842 R3HDMLQ9H3Y0 253 aa16.1■□□□□ 0.17
CLK3-213ENST00000563842 DNAJC18Q9H819 358 aa16.1■□□□□ 0.17
CLK3-213ENST00000563842 SLC4A4Q9Y6R1 1079 aa16.1■□□□□ 0.17
CLK3-213ENST00000563842 TRIM75PA6NK02 468 aa16.09■□□□□ 0.17
CLK3-213ENST00000563842 PDHXO00330 501 aa16.09■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms