RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 TLR7Q9NYK1 1049 aaKnown RBP21.08■□□□□ 0.97
VPS9D1-203ENST00000563798 PI4KBQ9UBF8 816 aa21.08■□□□□ 0.97
VPS9D1-203ENST00000563798 SRRDQ9UH36 339 aa21.08■□□□□ 0.97
VPS9D1-203ENST00000563798 ZSWIM8A7E2V4 1837 aa21.08■□□□□ 0.96
VPS9D1-203ENST00000563798 CYP2C8P10632 490 aa21.07■□□□□ 0.96
VPS9D1-203ENST00000563798 HOXD10P28358 340 aa21.07■□□□□ 0.96
VPS9D1-203ENST00000563798 CAP2P40123 477 aa21.07■□□□□ 0.96
VPS9D1-203ENST00000563798 TMEM106CQ9BVX2 250 aa21.07■□□□□ 0.96
VPS9D1-203ENST00000563798 CCDC8Q9H0W5 538 aaPredicted RBP21.07■□□□□ 0.96
VPS9D1-203ENST00000563798 PIH1D3Q9NQM4 214 aaKnown RBP21.07■□□□□ 0.96
VPS9D1-203ENST00000563798 AATFQ9NY61 560 aaKnown RBP eCLIP21.07■□□□□ 0.96
VPS9D1-203ENST00000563798 PTPRFP10586 1907 aa21.07■□□□□ 0.96
VPS9D1-203ENST00000563798 HSP90AB4PQ58FF6 505 aa21.06■□□□□ 0.96
VPS9D1-203ENST00000563798 KIAA0100Q14667 2235 aaKnown RBP21.05■□□□□ 0.96
VPS9D1-203ENST00000563798 TRIM75PA6NK02 468 aa21.05■□□□□ 0.96
VPS9D1-203ENST00000563798 FAM196BA6NMK8 535 aa21.05■□□□□ 0.96
VPS9D1-203ENST00000563798 EN2P19622 333 aaPredicted RBP21.05■□□□□ 0.96
VPS9D1-203ENST00000563798 OSBPP22059 807 aa21.05■□□□□ 0.96
VPS9D1-203ENST00000563798 RRP1BQ14684 758 aaKnown RBP21.05■□□□□ 0.96
VPS9D1-203ENST00000563798 FOXP4Q8IVH2 680 aaPredicted RBP21.05■□□□□ 0.96
VPS9D1-203ENST00000563798 PROCA1Q8NCQ7 364 aaPredicted RBP21.05■□□□□ 0.96
VPS9D1-203ENST00000563798 AGTPBP1Q9UPW5 1226 aa21.05■□□□□ 0.96
VPS9D1-203ENST00000563798 GADL1Q6ZQY3 521 aa21.04■□□□□ 0.96
VPS9D1-203ENST00000563798 CERS3Q8IU89 383 aa21.04■□□□□ 0.96
VPS9D1-203ENST00000563798 RPAP2Q8IXW5 612 aaPredicted RBP21.04■□□□□ 0.96
VPS9D1-203ENST00000563798 ZNF280CQ8ND82 737 aa21.04■□□□□ 0.96
VPS9D1-203ENST00000563798 TGFBRAP1Q8WUH2 860 aa21.04■□□□□ 0.96
VPS9D1-203ENST00000563798 FRMD4AQ9P2Q2 1039 aaPredicted RBP21.04■□□□□ 0.96
VPS9D1-203ENST00000563798 EXOC6BQ9Y2D4 811 aa21.04■□□□□ 0.96
VPS9D1-203ENST00000563798 FLT1P17948 1338 aa21.04■□□□□ 0.96
VPS9D1-203ENST00000563798 FMNL1O95466 1100 aaPredicted RBP21.03■□□□□ 0.96
VPS9D1-203ENST00000563798 FCGRTP55899 365 aa21.03■□□□□ 0.96
VPS9D1-203ENST00000563798 SH3D19Q5HYK7 790 aa21.03■□□□□ 0.96
VPS9D1-203ENST00000563798 CCDC84Q86UT8 332 aaPredicted RBP21.03■□□□□ 0.96
VPS9D1-203ENST00000563798 SH3TC2Q8TF17 1288 aa21.03■□□□□ 0.96
VPS9D1-203ENST00000563798 GINM1Q9NU53 330 aa21.03■□□□□ 0.96
VPS9D1-203ENST00000563798 ZBTB40Q9NUA8 1239 aa21.03■□□□□ 0.96
VPS9D1-203ENST00000563798 SIPA1L1O43166 1804 aa21.03■□□□□ 0.96
VPS9D1-203ENST00000563798 FOCADQ5VW36 1801 aa21.03■□□□□ 0.96
VPS9D1-203ENST00000563798 BRCA2P51587 3418 aa21.02■□□□□ 0.96
VPS9D1-203ENST00000563798 USP17L5A8MUK1 530 aa21.02■□□□□ 0.96
VPS9D1-203ENST00000563798 SPP2Q13103 211 aa21.02■□□□□ 0.96
VPS9D1-203ENST00000563798 WDR18Q9BV38 432 aa21.02■□□□□ 0.96
VPS9D1-203ENST00000563798 DDX19BQ9UMR2 479 aa21.02■□□□□ 0.96
VPS9D1-203ENST00000563798 MYPNQ86TC9 1320 aa21.02■□□□□ 0.95
VPS9D1-203ENST00000563798 CDK5RAP2Q96SN8 1893 aa21.01■□□□□ 0.95
VPS9D1-203ENST00000563798 MYO5AQ9Y4I1 1855 aaKnown RBP21.01■□□□□ 0.95
VPS9D1-203ENST00000563798 CYP7A1P22680 504 aa21.01■□□□□ 0.95
VPS9D1-203ENST00000563798 AACSQ86V21 672 aa21.01■□□□□ 0.95
VPS9D1-203ENST00000563798 MAPKAPK5Q8IW41 473 aa21.01■□□□□ 0.95
VPS9D1-203ENST00000563798 RHPN1Q8TCX5 695 aa21.01■□□□□ 0.95
VPS9D1-203ENST00000563798 DNAJC18Q9H819 358 aa21.01■□□□□ 0.95
VPS9D1-203ENST00000563798 MKI67P46013 3256 aaKnown RBP21.01■□□□□ 0.95
VPS9D1-203ENST00000563798 LOC285556D6RIA3 1793 aa21■□□□□ 0.95
VPS9D1-203ENST00000563798 IDH1O75874 414 aaKnown RBP21■□□□□ 0.95
VPS9D1-203ENST00000563798 ASNSP08243 561 aa21■□□□□ 0.95
VPS9D1-203ENST00000563798 GRK4P32298 578 aa21■□□□□ 0.95
VPS9D1-203ENST00000563798 SLC4A8Q2Y0W8 1093 aa21■□□□□ 0.95
VPS9D1-203ENST00000563798 TREML2Q5T2D2 321 aa21■□□□□ 0.95
VPS9D1-203ENST00000563798 AS3MTQ9HBK9 375 aa21■□□□□ 0.95
VPS9D1-203ENST00000563798 PNMA3Q9UL41 463 aa21■□□□□ 0.95
VPS9D1-203ENST00000563798 ATAD5Q96QE3 1844 aa20.99■□□□□ 0.95
VPS9D1-203ENST00000563798 DYNLL1P63167 89 aaKnown RBP20.99■□□□□ 0.95
VPS9D1-203ENST00000563798 PRKCZQ05513 592 aa20.99■□□□□ 0.95
VPS9D1-203ENST00000563798 MAP3K12Q12852 859 aa20.99■□□□□ 0.95
VPS9D1-203ENST00000563798 SIRT2Q8IXJ6 389 aa20.99■□□□□ 0.95
VPS9D1-203ENST00000563798 RAET1EQ8TD07 263 aa20.99■□□□□ 0.95
VPS9D1-203ENST00000563798 SMCR8Q8TEV9 937 aaPredicted RBP20.99■□□□□ 0.95
VPS9D1-203ENST00000563798 PPIL4Q8WUA2 492 aaKnown RBP eCLIP20.99■□□□□ 0.95
VPS9D1-203ENST00000563798 KIF1BPQ96EK5 621 aa20.99■□□□□ 0.95
VPS9D1-203ENST00000563798 CHMP4BQ9H444 224 aaKnown RBP20.99■□□□□ 0.95
VPS9D1-203ENST00000563798 ANTXR1Q9H6X2 564 aa20.99■□□□□ 0.95
VPS9D1-203ENST00000563798 PALD1Q9ULE6 856 aa20.99■□□□□ 0.95
VPS9D1-203ENST00000563798 HMMRO75330 724 aa20.98■□□□□ 0.95
VPS9D1-203ENST00000563798 GCLCP48506 637 aaPredicted RBP20.98■□□□□ 0.95
VPS9D1-203ENST00000563798 PABPC4Q13310 644 aaKnown RBP eCLIP20.98■□□□□ 0.95
VPS9D1-203ENST00000563798 FAM110CQ1W6H9 321 aa20.98■□□□□ 0.95
VPS9D1-203ENST00000563798 MAGEB6Q8N7X4 407 aa20.98■□□□□ 0.95
VPS9D1-203ENST00000563798 MGAMO43451 1857 aa20.98■□□□□ 0.95
VPS9D1-203ENST00000563798 HLA-DOAP06340 250 aa20.97■□□□□ 0.95
VPS9D1-203ENST00000563798 HMGCS2P54868 508 aa20.97■□□□□ 0.95
VPS9D1-203ENST00000563798 JAG1P78504 1218 aa20.97■□□□□ 0.95
VPS9D1-203ENST00000563798 IRF5Q13568 498 aa20.97■□□□□ 0.95
VPS9D1-203ENST00000563798 CLASRPQ8N2M8 674 aaKnown RBP20.97■□□□□ 0.95
VPS9D1-203ENST00000563798 SLAIN1Q8ND83 568 aa20.97■□□□□ 0.95
VPS9D1-203ENST00000563798 IL1RAPL2Q9NP60 686 aa20.97■□□□□ 0.95
VPS9D1-203ENST00000563798 RCAN3Q9UKA8 241 aa20.97■□□□□ 0.95
VPS9D1-203ENST00000563798 COG6Q9Y2V7 657 aa20.97■□□□□ 0.95
VPS9D1-203ENST00000563798 RAB11FIP3O75154 756 aa20.96■□□□□ 0.95
VPS9D1-203ENST00000563798 ECM2O94769 699 aaPredicted RBP20.96■□□□□ 0.95
VPS9D1-203ENST00000563798 BACE1P56817 501 aa20.96■□□□□ 0.95
VPS9D1-203ENST00000563798 TTF1Q15361 905 aaPredicted RBP20.96■□□□□ 0.95
VPS9D1-203ENST00000563798 MTFR1Q15390 333 aa20.96■□□□□ 0.95
VPS9D1-203ENST00000563798 CRACR2BQ8N4Y2 399 aaPredicted RBP20.96■□□□□ 0.95
VPS9D1-203ENST00000563798 PXYLP1Q8TE99 480 aa20.96■□□□□ 0.95
VPS9D1-203ENST00000563798 EHD4Q9H223 541 aa20.96■□□□□ 0.95
VPS9D1-203ENST00000563798 GABRQQ9UN88 632 aa20.96■□□□□ 0.95
VPS9D1-203ENST00000563798 NDUFB9Q9Y6M9 179 aa20.96■□□□□ 0.95
VPS9D1-203ENST00000563798 C19orf81C9J6K1 198 aa20.95■□□□□ 0.94
VPS9D1-203ENST00000563798 HOXA7P31268 230 aaPredicted RBP20.95■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms