RNA–Protein interactions for RNA: ENST00000563396.1

SMPD3-204, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 3

Gene SMPD3, Length 608 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-204ENST00000563396 NDUFB9Q9Y6M9 179 aa17.15■□□□□ 0.34
SMPD3-204ENST00000563396 MGAMO43451 1857 aa17.15■□□□□ 0.34
SMPD3-204ENST00000563396 CAP1Q01518 475 aa17.14■□□□□ 0.33
SMPD3-204ENST00000563396 TTF1Q15361 905 aaPredicted RBP17.14■□□□□ 0.33
SMPD3-204ENST00000563396 CD99L2Q8TCZ2 262 aa17.14■□□□□ 0.33
SMPD3-204ENST00000563396 AFG3L2Q9Y4W6 797 aa17.14■□□□□ 0.33
SMPD3-204ENST00000563396 CENPFP49454 3210 aa17.13■□□□□ 0.33
SMPD3-204ENST00000563396 FAM196BA6NMK8 535 aa17.13■□□□□ 0.33
SMPD3-204ENST00000563396 TNRC18O15417 2968 aaPredicted RBP17.13■□□□□ 0.33
SMPD3-204ENST00000563396 IFIT2P09913 472 aaKnown RBP17.13■□□□□ 0.33
SMPD3-204ENST00000563396 CYP7A1P22680 504 aa17.13■□□□□ 0.33
SMPD3-204ENST00000563396 MAP3K12Q12852 859 aa17.13■□□□□ 0.33
SMPD3-204ENST00000563396 MAGEB6Q8N7X4 407 aa17.13■□□□□ 0.33
SMPD3-204ENST00000563396 DNAJC18Q9H819 358 aa17.13■□□□□ 0.33
SMPD3-204ENST00000563396 XPO5Q9HAV4 1204 aaKnown RBP eCLIP17.13■□□□□ 0.33
SMPD3-204ENST00000563396 PI4KBQ9UBF8 816 aa17.13■□□□□ 0.33
SMPD3-204ENST00000563396 TRIM17Q9Y577 477 aa17.13■□□□□ 0.33
SMPD3-204ENST00000563396 APBB1O00213 710 aa17.12■□□□□ 0.33
SMPD3-204ENST00000563396 GPAT2Q6NUI2 795 aa17.12■□□□□ 0.33
SMPD3-204ENST00000563396 MAPKAPK5Q8IW41 473 aa17.12■□□□□ 0.33
SMPD3-204ENST00000563396 TGFBRAP1Q8WUH2 860 aa17.12■□□□□ 0.33
SMPD3-204ENST00000563396 TBC1D2Q9BYX2 928 aa17.12■□□□□ 0.33
SMPD3-204ENST00000563396 ZHX2Q9Y6X8 837 aa17.12■□□□□ 0.33
SMPD3-204ENST00000563396 PDHXO00330 501 aa17.11■□□□□ 0.33
SMPD3-204ENST00000563396 CAP2P40123 477 aa17.11■□□□□ 0.33
SMPD3-204ENST00000563396 RRP1P56182 461 aaKnown RBP17.11■□□□□ 0.33
SMPD3-204ENST00000563396 DYNLL1P63167 89 aaKnown RBP17.11■□□□□ 0.33
SMPD3-204ENST00000563396 C17orf99Q6UX52 265 aa17.11■□□□□ 0.33
SMPD3-204ENST00000563396 RIOK1Q9BRS2 568 aaKnown RBP17.11■□□□□ 0.33
SMPD3-204ENST00000563396 LRRCC1Q9C099 1032 aa17.11■□□□□ 0.33
SMPD3-204ENST00000563396 EFCC1Q9HA90 598 aa17.11■□□□□ 0.33
SMPD3-204ENST00000563396 FRMD4AQ9P2Q2 1039 aaPredicted RBP17.11■□□□□ 0.33
SMPD3-204ENST00000563396 SLC45A1Q9Y2W3 748 aa17.11■□□□□ 0.33
SMPD3-204ENST00000563396 MYH8P13535 1937 aa17.1■□□□□ 0.33
SMPD3-204ENST00000563396 PDE6AP16499 860 aa17.1■□□□□ 0.33
SMPD3-204ENST00000563396 ATP5JP18859 108 aa17.1■□□□□ 0.33
SMPD3-204ENST00000563396 RRP1BQ14684 758 aaKnown RBP17.1■□□□□ 0.33
SMPD3-204ENST00000563396 FASTKD5Q7L8L6 764 aaKnown RBP17.1■□□□□ 0.33
SMPD3-204ENST00000563396 MIGA1Q8NAN2 632 aa17.1■□□□□ 0.33
SMPD3-204ENST00000563396 PARK7Q99497 189 aaKnown RBP17.1■□□□□ 0.33
SMPD3-204ENST00000563396 PTPN22Q9Y2R2 807 aa17.1■□□□□ 0.33
SMPD3-204ENST00000563396 BRCA2P51587 3418 aa17.09■□□□□ 0.33
SMPD3-204ENST00000563396 TCRBV5S4A2TA0A5A2 114 aa17.09■□□□□ 0.33
SMPD3-204ENST00000563396 LACTBP83111 547 aaPredicted RBP17.09■□□□□ 0.33
SMPD3-204ENST00000563396 EHD4Q9H223 541 aa17.09■□□□□ 0.33
SMPD3-204ENST00000563396 DCTPP1Q9H773 170 aa17.09■□□□□ 0.33
SMPD3-204ENST00000563396 GOLIM4O00461 696 aa17.08■□□□□ 0.32
SMPD3-204ENST00000563396 HLA-DOAP06340 250 aa17.08■□□□□ 0.32
SMPD3-204ENST00000563396 CCDC84Q86UT8 332 aaPredicted RBP17.08■□□□□ 0.32
SMPD3-204ENST00000563396 PROCA1Q8NCQ7 364 aaPredicted RBP17.08■□□□□ 0.32
SMPD3-204ENST00000563396 DNAJC2Q99543 621 aaKnown RBP17.08■□□□□ 0.32
SMPD3-204ENST00000563396 HAUS7Q99871 368 aa17.08■□□□□ 0.32
SMPD3-204ENST00000563396 GINM1Q9NU53 330 aa17.08■□□□□ 0.32
SMPD3-204ENST00000563396 PAG1Q9NWQ8 432 aa17.08■□□□□ 0.32
SMPD3-204ENST00000563396 PALD1Q9ULE6 856 aa17.08■□□□□ 0.32
SMPD3-204ENST00000563396 BAZ2AQ9UIF9 1905 aaKnown RBP17.08■□□□□ 0.32
SMPD3-204ENST00000563396 ZNF532Q9HCE3 1301 aa17.07■□□□□ 0.32
SMPD3-204ENST00000563396 TRIM75PA6NK02 468 aa17.07■□□□□ 0.32
SMPD3-204ENST00000563396 BCRP11274 1271 aa17.07■□□□□ 0.32
SMPD3-204ENST00000563396 KCNA4P22459 653 aa17.07■□□□□ 0.32
SMPD3-204ENST00000563396 SOX10P56693 466 aa17.07■□□□□ 0.32
SMPD3-204ENST00000563396 ARHGEF6Q15052 776 aa17.07■□□□□ 0.32
SMPD3-204ENST00000563396 SLC9C2Q5TAH2 1124 aa17.07■□□□□ 0.32
SMPD3-204ENST00000563396 FOXP4Q8IVH2 680 aaPredicted RBP17.07■□□□□ 0.32
SMPD3-204ENST00000563396 ZNF280CQ8ND82 737 aa17.07■□□□□ 0.32
SMPD3-204ENST00000563396 ARMC5Q96C12 935 aa17.07■□□□□ 0.32
SMPD3-204ENST00000563396 AGTPBP1Q9UPW5 1226 aa17.07■□□□□ 0.32
SMPD3-204ENST00000563396 GNRH1P01148 92 aa17.06■□□□□ 0.32
SMPD3-204ENST00000563396 ASNSP08243 561 aa17.06■□□□□ 0.32
SMPD3-204ENST00000563396 MLLT1Q03111 559 aaPredicted RBP17.06■□□□□ 0.32
SMPD3-204ENST00000563396 SH3D19Q5HYK7 790 aa17.06■□□□□ 0.32
SMPD3-204ENST00000563396 EDC3Q96F86 508 aaKnown RBP17.06■□□□□ 0.32
SMPD3-204ENST00000563396 WDR18Q9BV38 432 aa17.06■□□□□ 0.32
SMPD3-204ENST00000563396 MAGEB6P1A0A0J9YX57 407 aa17.05■□□□□ 0.32
SMPD3-204ENST00000563396 USP17L5A8MUK1 530 aa17.05■□□□□ 0.32
SMPD3-204ENST00000563396 ADD2P35612 726 aa17.05■□□□□ 0.32
SMPD3-204ENST00000563396 USP5P45974 858 aa17.05■□□□□ 0.32
SMPD3-204ENST00000563396 CRACR2BQ8N4Y2 399 aaPredicted RBP17.05■□□□□ 0.32
SMPD3-204ENST00000563396 ARHGAP39Q9C0H5 1083 aa17.05■□□□□ 0.32
SMPD3-204ENST00000563396 BOLA2Q9H3K6 86 aa17.05■□□□□ 0.32
SMPD3-204ENST00000563396 AS3MTQ9HBK9 375 aa17.05■□□□□ 0.32
SMPD3-204ENST00000563396 SAP30BPQ9UHR5 308 aaKnown RBP17.05■□□□□ 0.32
SMPD3-204ENST00000563396 CPA4Q9UI42 421 aa17.05■□□□□ 0.32
SMPD3-204ENST00000563396 ZBTB21Q9ULJ3 1066 aa17.05■□□□□ 0.32
SMPD3-204ENST00000563396 SMARCA5O60264 1052 aaPredicted RBP17.04■□□□□ 0.32
SMPD3-204ENST00000563396 CYP2C8P10632 490 aa17.04■□□□□ 0.32
SMPD3-204ENST00000563396 CTGFP29279 349 aa17.04■□□□□ 0.32
SMPD3-204ENST00000563396 PRMT2P55345 433 aa17.04■□□□□ 0.32
SMPD3-204ENST00000563396 JAG1P78504 1218 aa17.04■□□□□ 0.32
SMPD3-204ENST00000563396 KIF22Q14807 665 aa17.04■□□□□ 0.32
SMPD3-204ENST00000563396 TATDN1Q6P1N9 297 aa17.04■□□□□ 0.32
SMPD3-204ENST00000563396 GADL1Q6ZQY3 521 aa17.04■□□□□ 0.32
SMPD3-204ENST00000563396 SERPINB13Q9UIV8 391 aa17.04■□□□□ 0.32
SMPD3-204ENST00000563396 PCDHB15Q9Y5E8 787 aa17.04■□□□□ 0.32
SMPD3-204ENST00000563396 GABPAQ06546 454 aa17.03■□□□□ 0.32
SMPD3-204ENST00000563396 SPP2Q13103 211 aa17.03■□□□□ 0.32
SMPD3-204ENST00000563396 SHROOM1Q2M3G4 852 aaPredicted RBP17.03■□□□□ 0.32
SMPD3-204ENST00000563396 TREML2Q5T2D2 321 aa17.03■□□□□ 0.32
SMPD3-204ENST00000563396 TTC6Q86TZ1 520 aa17.03■□□□□ 0.32
SMPD3-204ENST00000563396 LCORLQ8N3X6 602 aa17.03■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms