RNA–Protein interactions for RNA: ENST00000563343.5

HERPUD1-206, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

TSL 4

Gene HERPUD1, Length 567 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-206ENST00000563343 CACNB2Q08289 660 aaPredicted RBP9.77□□□□□ -0.85
HERPUD1-206ENST00000563343 CAVIN4Q5BKX8 364 aa9.77□□□□□ -0.85
HERPUD1-206ENST00000563343 PROCA1Q8NCQ7 364 aaPredicted RBP9.77□□□□□ -0.85
HERPUD1-206ENST00000563343 SUCLG2Q96I99 432 aa9.77□□□□□ -0.85
HERPUD1-206ENST00000563343 IDI2Q9BXS1 227 aa9.77□□□□□ -0.85
HERPUD1-206ENST00000563343 RTN4Q9NQC3 1192 aaKnown RBP9.77□□□□□ -0.85
HERPUD1-206ENST00000563343 PICK1Q9NRD5 415 aa9.77□□□□□ -0.85
HERPUD1-206ENST00000563343 MORF4L1Q9UBU8 362 aa9.77□□□□□ -0.85
HERPUD1-206ENST00000563343 REV3LO60673 3130 aa9.76□□□□□ -0.85
HERPUD1-206ENST00000563343 TRIM75PA6NK02 468 aa9.76□□□□□ -0.85
HERPUD1-206ENST00000563343 CTNND1O60716 968 aaKnown RBP9.76□□□□□ -0.85
HERPUD1-206ENST00000563343 XRCC5P13010 732 aaKnown RBP9.76□□□□□ -0.85
HERPUD1-206ENST00000563343 PRDX5P30044 214 aa9.76□□□□□ -0.85
HERPUD1-206ENST00000563343 CCND3P30281 292 aaPredicted RBP9.76□□□□□ -0.85
HERPUD1-206ENST00000563343 GCLCP48506 637 aaPredicted RBP9.76□□□□□ -0.85
HERPUD1-206ENST00000563343 SHHQ15465 462 aa9.76□□□□□ -0.85
HERPUD1-206ENST00000563343 C9orf50Q5SZB4 431 aa9.76□□□□□ -0.85
HERPUD1-206ENST00000563343 USP38Q8NB14 1042 aa9.76□□□□□ -0.85
HERPUD1-206ENST00000563343 USP6NLQ92738 828 aa9.76□□□□□ -0.85
HERPUD1-206ENST00000563343 USP40Q9NVE5 1235 aa9.76□□□□□ -0.85
HERPUD1-206ENST00000563343 PNMA3Q9UL41 463 aa9.76□□□□□ -0.85
HERPUD1-206ENST00000563343 NCOR1O75376 2440 aa9.76□□□□□ -0.85
HERPUD1-206ENST00000563343 FOCADQ5VW36 1801 aa9.75□□□□□ -0.85
HERPUD1-206ENST00000563343 DDTLA6NHG4 134 aaPredicted RBP9.75□□□□□ -0.85
HERPUD1-206ENST00000563343 ENTPD3O75355 529 aa9.75□□□□□ -0.85
HERPUD1-206ENST00000563343 CYP2B6P20813 491 aa9.75□□□□□ -0.85
HERPUD1-206ENST00000563343 RGS3P49796 1198 aa9.75□□□□□ -0.85
HERPUD1-206ENST00000563343 RABL6Q3YEC7 729 aaPredicted RBP9.75□□□□□ -0.85
HERPUD1-206ENST00000563343 TJAP1Q5JTD0 557 aa9.75□□□□□ -0.85
HERPUD1-206ENST00000563343 WDR66Q8TBY9 1149 aa9.75□□□□□ -0.85
HERPUD1-206ENST00000563343 ASCC2Q9H1I8 757 aaPredicted RBP9.75□□□□□ -0.85
HERPUD1-206ENST00000563343 DDX4Q9NQI0 724 aaKnown RBP9.75□□□□□ -0.85
HERPUD1-206ENST00000563343 GBF1Q92538 1859 aa9.74□□□□□ -0.85
HERPUD1-206ENST00000563343 PLXNA1Q9UIW2 1896 aa9.74□□□□□ -0.85
HERPUD1-206ENST00000563343 CHD9Q3L8U1 2897 aa9.74□□□□□ -0.85
HERPUD1-206ENST00000563343 PEX10O60683 326 aa9.74□□□□□ -0.85
HERPUD1-206ENST00000563343 VAMP4O75379 141 aa9.74□□□□□ -0.85
HERPUD1-206ENST00000563343 SMAD3P84022 425 aaKnown RBP9.74□□□□□ -0.85
HERPUD1-206ENST00000563343 CCL14Q16627 93 aa9.74□□□□□ -0.85
HERPUD1-206ENST00000563343 METTL24Q5JXM2 366 aa9.74□□□□□ -0.85
HERPUD1-206ENST00000563343 ANKRD44Q8N8A2 993 aa9.74□□□□□ -0.85
HERPUD1-206ENST00000563343 UTYO14607 1347 aa9.74□□□□□ -0.85
HERPUD1-206ENST00000563343 GAKO14976 1311 aa9.74□□□□□ -0.85
HERPUD1-206ENST00000563343 SALL1Q9NSC2 1324 aa9.74□□□□□ -0.85
HERPUD1-206ENST00000563343 NBPF7P0C2Y1 421 aaPredicted RBP9.73□□□□□ -0.85
HERPUD1-206ENST00000563343 FOSL2P15408 326 aa9.73□□□□□ -0.85
HERPUD1-206ENST00000563343 RRP1BQ14684 758 aaKnown RBP9.73□□□□□ -0.85
HERPUD1-206ENST00000563343 CCDC27Q2M243 656 aa9.73□□□□□ -0.85
HERPUD1-206ENST00000563343 SH3D19Q5HYK7 790 aa9.73□□□□□ -0.85
HERPUD1-206ENST00000563343 SOCS4Q8WXH5 440 aa9.73□□□□□ -0.85
HERPUD1-206ENST00000563343 LBHD1Q9BQE6 289 aaPredicted RBP9.73□□□□□ -0.85
HERPUD1-206ENST00000563343 NUDT12Q9BQG2 462 aa9.73□□□□□ -0.85
HERPUD1-206ENST00000563343 TXNRD2Q9NNW7 524 aa9.73□□□□□ -0.85
HERPUD1-206ENST00000563343 C9orf78Q9NZ63 289 aaPredicted RBP9.73□□□□□ -0.85
HERPUD1-206ENST00000563343 LRRFIP2Q9Y608 721 aaKnown RBP9.73□□□□□ -0.85
HERPUD1-206ENST00000563343 TCF20Q9UGU0 1960 aaKnown RBP9.73□□□□□ -0.85
HERPUD1-206ENST00000563343 TBC1D12O60347 775 aa9.72□□□□□ -0.85
HERPUD1-206ENST00000563343 ALDH1L1O75891 902 aa9.72□□□□□ -0.85
HERPUD1-206ENST00000563343 HMGCS2P54868 508 aa9.72□□□□□ -0.85
HERPUD1-206ENST00000563343 SPP2Q13103 211 aa9.72□□□□□ -0.85
HERPUD1-206ENST00000563343 MORN1Q5T089 497 aa9.72□□□□□ -0.85
HERPUD1-206ENST00000563343 POTEEQ6S8J3 1075 aa9.72□□□□□ -0.85
HERPUD1-206ENST00000563343 TRMT44Q8IYL2 757 aaKnown RBP9.72□□□□□ -0.85
HERPUD1-206ENST00000563343 ZNF280CQ8ND82 737 aa9.72□□□□□ -0.85
HERPUD1-206ENST00000563343 KLHDC4Q8TBB5 520 aa9.72□□□□□ -0.85
HERPUD1-206ENST00000563343 SENP6Q9GZR1 1112 aaPredicted RBP9.72□□□□□ -0.85
HERPUD1-206ENST00000563343 BICC1Q9H694 974 aaKnown RBP9.72□□□□□ -0.85
HERPUD1-206ENST00000563343 ZNF236Q9UL36 1845 aa9.72□□□□□ -0.85
HERPUD1-206ENST00000563343 TMEM265A0A087WTH1 108 aa9.71□□□□□ -0.86
HERPUD1-206ENST00000563343 FAM196BA6NMK8 535 aa9.71□□□□□ -0.86
HERPUD1-206ENST00000563343 LDHBP07195 334 aaKnown RBP9.71□□□□□ -0.86
HERPUD1-206ENST00000563343 ZKSCAN1P17029 563 aaPredicted RBP9.71□□□□□ -0.86
HERPUD1-206ENST00000563343 ATN1P54259 1190 aaPredicted RBP9.71□□□□□ -0.86
HERPUD1-206ENST00000563343 RTP1P59025 263 aa9.71□□□□□ -0.86
HERPUD1-206ENST00000563343 PUM3Q15397 648 aaKnown RBP9.71□□□□□ -0.86
HERPUD1-206ENST00000563343 Q3C1V9 767 aa9.71□□□□□ -0.86
HERPUD1-206ENST00000563343 ZSCAN29Q8IWY8 852 aaPredicted RBP9.71□□□□□ -0.86
HERPUD1-206ENST00000563343 WWC1Q8IX03 1113 aa9.71□□□□□ -0.86
HERPUD1-206ENST00000563343 FAM122AQ96E09 287 aa9.71□□□□□ -0.86
HERPUD1-206ENST00000563343 OSBPL5Q9H0X9 879 aaPredicted RBP9.71□□□□□ -0.86
HERPUD1-206ENST00000563343 PORCNQ9H237 461 aa9.71□□□□□ -0.86
HERPUD1-206ENST00000563343 RBPJLQ9UBG7 517 aa9.71□□□□□ -0.86
HERPUD1-206ENST00000563343 IL16Q14005 1332 aa9.71□□□□□ -0.86
HERPUD1-206ENST00000563343 FANCIQ9NVI1 1328 aa9.71□□□□□ -0.86
HERPUD1-206ENST00000563343 ZNFX1Q9P2E3 1918 aaKnown RBP9.7□□□□□ -0.86
HERPUD1-206ENST00000563343 SMCHD1A6NHR9 2005 aa9.7□□□□□ -0.86
HERPUD1-206ENST00000563343 MYO9BQ13459 2157 aa9.7□□□□□ -0.86
HERPUD1-206ENST00000563343 IGHA2P01877 340 aa9.7□□□□□ -0.86
HERPUD1-206ENST00000563343 IFIT1P09914 478 aaKnown RBP9.7□□□□□ -0.86
HERPUD1-206ENST00000563343 HOXA7P31268 230 aaPredicted RBP9.7□□□□□ -0.86
HERPUD1-206ENST00000563343 CAP2P40123 477 aa9.7□□□□□ -0.86
HERPUD1-206ENST00000563343 RFX5P48382 616 aaPredicted RBP9.7□□□□□ -0.86
HERPUD1-206ENST00000563343 RHBDL3P58872 404 aa9.7□□□□□ -0.86
HERPUD1-206ENST00000563343 PABPC4Q13310 644 aaKnown RBP eCLIP9.7□□□□□ -0.86
HERPUD1-206ENST00000563343 GRIN2CQ14957 1233 aa9.7□□□□□ -0.86
HERPUD1-206ENST00000563343 GPR142Q7Z601 462 aa9.7□□□□□ -0.86
HERPUD1-206ENST00000563343 BADQ92934 168 aa9.7□□□□□ -0.86
HERPUD1-206ENST00000563343 FAM163AQ96GL9 167 aaPredicted RBP9.7□□□□□ -0.86
HERPUD1-206ENST00000563343 P2RX7Q99572 595 aaKnown RBP9.7□□□□□ -0.86
HERPUD1-206ENST00000563343 TBC1D2Q9BYX2 928 aa9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 64.6 ms