RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 SPDYE5A6NIY4 337 aa15.6■□□□□ 0.09
NEDD8-208ENST00000560427 PHF20L1A8MW92 1017 aa15.6■□□□□ 0.09
NEDD8-208ENST00000560427 MAP2K1Q02750 393 aaPredicted RBP15.6■□□□□ 0.09
NEDD8-208ENST00000560427 GRM1Q13255 1194 aa15.6■□□□□ 0.09
NEDD8-208ENST00000560427 SPRYD7Q5W111 196 aa15.6■□□□□ 0.09
NEDD8-208ENST00000560427 CRACR2BQ8N4Y2 399 aaPredicted RBP15.6■□□□□ 0.09
NEDD8-208ENST00000560427 WNK4Q96J92 1243 aa15.6■□□□□ 0.09
NEDD8-208ENST00000560427 CLMNQ96JQ2 1002 aa15.6■□□□□ 0.09
NEDD8-208ENST00000560427 XPO5Q9HAV4 1204 aaKnown RBP eCLIP15.6■□□□□ 0.09
NEDD8-208ENST00000560427 GINM1Q9NU53 330 aa15.6■□□□□ 0.09
NEDD8-208ENST00000560427 MCM9Q9NXL9 1143 aa15.6■□□□□ 0.09
NEDD8-208ENST00000560427 ARPP21Q9UBL0 812 aaPredicted RBP15.6■□□□□ 0.09
NEDD8-208ENST00000560427 SAP30BPQ9UHR5 308 aaKnown RBP15.6■□□□□ 0.09
NEDD8-208ENST00000560427 SERPINB13Q9UIV8 391 aa15.6■□□□□ 0.09
NEDD8-208ENST00000560427 SNCAIPQ9Y6H5 919 aa15.6■□□□□ 0.09
NEDD8-208ENST00000560427 LAMB1P07942 1786 aa15.59■□□□□ 0.09
NEDD8-208ENST00000560427 AK9Q5TCS8 1911 aa15.59■□□□□ 0.09
NEDD8-208ENST00000560427 M0R2C6 588 aa15.59■□□□□ 0.09
NEDD8-208ENST00000560427 CTNND1O60716 968 aaKnown RBP15.59■□□□□ 0.09
NEDD8-208ENST00000560427 GSPT1P15170 499 aaKnown RBP15.59■□□□□ 0.09
NEDD8-208ENST00000560427 SDSP20132 328 aa15.59■□□□□ 0.09
NEDD8-208ENST00000560427 ERO1BQ86YB8 467 aa15.59■□□□□ 0.09
NEDD8-208ENST00000560427 SCYL3Q8IZE3 742 aa15.59■□□□□ 0.09
NEDD8-208ENST00000560427 NACAP1Q9BZK3 213 aa15.59■□□□□ 0.09
NEDD8-208ENST00000560427 SIPA1L1O43166 1804 aa15.59■□□□□ 0.09
NEDD8-208ENST00000560427 PRKAB2O43741 272 aa15.58■□□□□ 0.08
NEDD8-208ENST00000560427 POLR3DP05423 398 aaPredicted RBP15.58■□□□□ 0.08
NEDD8-208ENST00000560427 INPP5BP32019 993 aa15.58■□□□□ 0.08
NEDD8-208ENST00000560427 MFAP1P55081 439 aaKnown RBP15.58■□□□□ 0.08
NEDD8-208ENST00000560427 PPATQ06203 517 aa15.58■□□□□ 0.08
NEDD8-208ENST00000560427 SREBF2Q12772 1141 aa15.58■□□□□ 0.08
NEDD8-208ENST00000560427 MCMDC2Q4G0Z9 681 aa15.58■□□□□ 0.08
NEDD8-208ENST00000560427 ZKSCAN4Q969J2 545 aaPredicted RBP15.58■□□□□ 0.08
NEDD8-208ENST00000560427 OPTNQ96CV9 577 aa15.58■□□□□ 0.08
NEDD8-208ENST00000560427 TBC1D2Q9BYX2 928 aa15.58■□□□□ 0.08
NEDD8-208ENST00000560427 ELP3Q9H9T3 547 aa15.58■□□□□ 0.08
NEDD8-208ENST00000560427 PICK1Q9NRD5 415 aa15.58■□□□□ 0.08
NEDD8-208ENST00000560427 DIAPH3Q9NSV4 1193 aa15.58■□□□□ 0.08
NEDD8-208ENST00000560427 MYH1P12882 1939 aa15.58■□□□□ 0.08
NEDD8-208ENST00000560427 MANSC4A6NHS7 340 aaPredicted RBP15.57■□□□□ 0.08
NEDD8-208ENST00000560427 GSG1L2A8MUP6 293 aa15.57■□□□□ 0.08
NEDD8-208ENST00000560427 AOC2O75106 756 aa15.57■□□□□ 0.08
NEDD8-208ENST00000560427 CAP2P40123 477 aa15.57■□□□□ 0.08
NEDD8-208ENST00000560427 INHBEP58166 350 aa15.57■□□□□ 0.08
NEDD8-208ENST00000560427 GABPAQ06546 454 aa15.57■□□□□ 0.08
NEDD8-208ENST00000560427 PPIL2Q13356 520 aa15.57■□□□□ 0.08
NEDD8-208ENST00000560427 SBK1Q52WX2 424 aa15.57■□□□□ 0.08
NEDD8-208ENST00000560427 DNAJC18Q9H819 358 aa15.57■□□□□ 0.08
NEDD8-208ENST00000560427 SWAP70Q9UH65 585 aa15.57■□□□□ 0.08
NEDD8-208ENST00000560427 CEP350Q5VT06 3117 aa15.57■□□□□ 0.08
NEDD8-208ENST00000560427 DOCK1Q14185 1865 aa15.57■□□□□ 0.08
NEDD8-208ENST00000560427 A0A0D9SFI3 127 aa15.56■□□□□ 0.08
NEDD8-208ENST00000560427 PATL2C9JE40 543 aaKnown RBP15.56■□□□□ 0.08
NEDD8-208ENST00000560427 CA12O43570 354 aa15.56■□□□□ 0.08
NEDD8-208ENST00000560427 KIF23Q02241 960 aaPredicted RBP15.56■□□□□ 0.08
NEDD8-208ENST00000560427 NMIQ13287 307 aaPredicted RBP15.56■□□□□ 0.08
NEDD8-208ENST00000560427 C12orf60Q5U649 245 aa15.56■□□□□ 0.08
NEDD8-208ENST00000560427 TATDN1Q6P1N9 297 aa15.56■□□□□ 0.08
NEDD8-208ENST00000560427 SEC62Q99442 399 aaKnown RBP15.56■□□□□ 0.08
NEDD8-208ENST00000560427 RAD50Q92878 1312 aa15.56■□□□□ 0.08
NEDD8-208ENST00000560427 ROBO3Q96MS0 1386 aa15.56■□□□□ 0.08
NEDD8-208ENST00000560427 ZMYM6O95789 1325 aa15.55■□□□□ 0.08
NEDD8-208ENST00000560427 CCDC171Q6TFL3 1326 aa15.55■□□□□ 0.08
NEDD8-208ENST00000560427 USP17L12C9JPN9 530 aa15.55■□□□□ 0.08
NEDD8-208ENST00000560427 USP17L21D6R901 530 aa15.55■□□□□ 0.08
NEDD8-208ENST00000560427 ASNSP08243 561 aa15.55■□□□□ 0.08
NEDD8-208ENST00000560427 TDO2P48775 406 aa15.55■□□□□ 0.08
NEDD8-208ENST00000560427 PLCD1P51178 756 aa15.55■□□□□ 0.08
NEDD8-208ENST00000560427 GTF2A2P52657 109 aa15.55■□□□□ 0.08
NEDD8-208ENST00000560427 BMP2KLQ5H9B9 411 aa15.55■□□□□ 0.08
NEDD8-208ENST00000560427 OTUD5Q96G74 571 aa15.55■□□□□ 0.08
NEDD8-208ENST00000560427 FAM227BQ96M60 508 aa15.55■□□□□ 0.08
NEDD8-208ENST00000560427 BEGAINQ9BUH8 593 aa15.55■□□□□ 0.08
NEDD8-208ENST00000560427 WBP1LQ9NX94 342 aa15.55■□□□□ 0.08
NEDD8-208ENST00000560427 FAM196BA6NMK8 535 aa15.54■□□□□ 0.08
NEDD8-208ENST00000560427 APPP05067 770 aa15.54■□□□□ 0.08
NEDD8-208ENST00000560427 PTPRAP18433 802 aa15.54■□□□□ 0.08
NEDD8-208ENST00000560427 GJA5P36382 358 aa15.54■□□□□ 0.08
NEDD8-208ENST00000560427 TM4SF4P48230 202 aa15.54■□□□□ 0.08
NEDD8-208ENST00000560427 SLC4A8Q2Y0W8 1093 aa15.54■□□□□ 0.08
NEDD8-208ENST00000560427 CTR9Q6PD62 1173 aa15.54■□□□□ 0.08
NEDD8-208ENST00000560427 IFNL3Q8IZI9 196 aa15.54■□□□□ 0.08
NEDD8-208ENST00000560427 NAPBQ9H115 298 aa15.54■□□□□ 0.08
NEDD8-208ENST00000560427 EPB41L4AQ9HCS5 686 aaPredicted RBP15.54■□□□□ 0.08
NEDD8-208ENST00000560427 SAGE1Q9NXZ1 904 aa15.54■□□□□ 0.08
NEDD8-208ENST00000560427 TESPA1A2RU30 521 aaPredicted RBP15.53■□□□□ 0.08
NEDD8-208ENST00000560427 CXCL11O14625 94 aa15.53■□□□□ 0.08
NEDD8-208ENST00000560427 SLURP2P0DP57 97 aa15.53■□□□□ 0.08
NEDD8-208ENST00000560427 SNAPC2Q13487 334 aa15.53■□□□□ 0.08
NEDD8-208ENST00000560427 C16orf86Q6ZW13 317 aa15.53■□□□□ 0.08
NEDD8-208ENST00000560427 RUFY2Q8WXA3 655 aa15.53■□□□□ 0.08
NEDD8-208ENST00000560427 ZNF287Q9HBT7 754 aa15.53■□□□□ 0.08
NEDD8-208ENST00000560427 KCNH4Q9UQ05 1017 aa15.53■□□□□ 0.08
NEDD8-208ENST00000560427 IRF6O14896 467 aa15.52■□□□□ 0.08
NEDD8-208ENST00000560427 ALDH1A1P00352 501 aa15.52■□□□□ 0.08
NEDD8-208ENST00000560427 SLC3A2P08195 630 aaKnown RBP15.52■□□□□ 0.08
NEDD8-208ENST00000560427 CYP2D6P10635 497 aa15.52■□□□□ 0.08
NEDD8-208ENST00000560427 CETPP11597 493 aa15.52■□□□□ 0.08
NEDD8-208ENST00000560427 SHMT1P34896 483 aa15.52■□□□□ 0.08
NEDD8-208ENST00000560427 MKRN3Q13064 507 aaKnown RBP15.52■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms