RNA–Protein interactions for RNA: ENST00000559844.5

SNX1-208, Transcript of sorting nexin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX1, Length 1,971 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-208ENST00000559844 LMOD1P29536 600 aaPredicted RBP20.83■□□□□ 0.92
SNX1-208ENST00000559844 IFFO2Q5TF58 517 aa20.83■□□□□ 0.92
SNX1-208ENST00000559844 ADGRA1Q86SQ6 560 aa20.83■□□□□ 0.92
SNX1-208ENST00000559844 SLF2Q8IX21 1173 aa20.83■□□□□ 0.92
SNX1-208ENST00000559844 L3MBTL3Q96JM7 780 aaPredicted RBP20.83■□□□□ 0.92
SNX1-208ENST00000559844 NBPF3Q9H094 633 aa20.83■□□□□ 0.92
SNX1-208ENST00000559844 BRPF3Q9ULD4 1205 aa20.83■□□□□ 0.92
SNX1-208ENST00000559844 WDR90Q96KV7 1748 aa20.82■□□□□ 0.92
SNX1-208ENST00000559844 FIBPO43427 364 aa20.82■□□□□ 0.92
SNX1-208ENST00000559844 GADD45BO75293 160 aaPredicted RBP20.82■□□□□ 0.92
SNX1-208ENST00000559844 CRKP46108 304 aa20.82■□□□□ 0.92
SNX1-208ENST00000559844 RBM5P52756 815 aaKnown RBP eCLIP20.82■□□□□ 0.92
SNX1-208ENST00000559844 TBC1D10CQ8IV04 446 aa20.82■□□□□ 0.92
SNX1-208ENST00000559844 SERPINA10Q9UK55 444 aa20.82■□□□□ 0.92
SNX1-208ENST00000559844 EPS15P42566 896 aa20.81■□□□□ 0.92
SNX1-208ENST00000559844 ANTXR2P58335 489 aa20.81■□□□□ 0.92
SNX1-208ENST00000559844 CCT2P78371 535 aaKnown RBP20.81■□□□□ 0.92
SNX1-208ENST00000559844 HDLBPQ00341 1268 aaKnown RBP20.81■□□□□ 0.92
SNX1-208ENST00000559844 DDX11Q96FC9 970 aa20.81■□□□□ 0.92
SNX1-208ENST00000559844 ZSCAN16Q9H4T2 348 aaPredicted RBP20.81■□□□□ 0.92
SNX1-208ENST00000559844 MROH7-TTC4A0A0A0MT08 1334 aa20.81■□□□□ 0.92
SNX1-208ENST00000559844 H7C1D1 291 aa20.81■□□□□ 0.92
SNX1-208ENST00000559844 CTDNEP1O95476 244 aa20.81■□□□□ 0.92
SNX1-208ENST00000559844 LDHCP07864 332 aa20.81■□□□□ 0.92
SNX1-208ENST00000559844 ZNF280AP59817 542 aaPredicted RBP20.81■□□□□ 0.92
SNX1-208ENST00000559844 CFAP100Q494V2 611 aa20.81■□□□□ 0.92
SNX1-208ENST00000559844 HHIPL2Q6UWX4 724 aa20.81■□□□□ 0.92
SNX1-208ENST00000559844 CNNM2Q9H8M5 875 aa20.81■□□□□ 0.92
SNX1-208ENST00000559844 EPB41L4AQ9HCS5 686 aaPredicted RBP20.81■□□□□ 0.92
SNX1-208ENST00000559844 MYOZ2Q9NPC6 264 aa20.81■□□□□ 0.92
SNX1-208ENST00000559844 DAGLAQ9Y4D2 1042 aa20.81■□□□□ 0.92
SNX1-208ENST00000559844 PCDHAC2Q9Y5I4 1007 aa20.81■□□□□ 0.92
SNX1-208ENST00000559844 SLC4A4Q9Y6R1 1079 aa20.81■□□□□ 0.92
SNX1-208ENST00000559844 ECM29Q5VYK3 1845 aa20.8■□□□□ 0.92
SNX1-208ENST00000559844 KLF18A0A0U1RQI7 1052 aa20.8■□□□□ 0.92
SNX1-208ENST00000559844 GSG1L2A8MUP6 293 aa20.8■□□□□ 0.92
SNX1-208ENST00000559844 TMED8Q6PL24 325 aaPredicted RBP20.8■□□□□ 0.92
SNX1-208ENST00000559844 LRSAM1Q6UWE0 723 aa20.8■□□□□ 0.92
SNX1-208ENST00000559844 LCORLQ8N3X6 602 aa20.8■□□□□ 0.92
SNX1-208ENST00000559844 TMEM87BQ96K49 555 aa20.8■□□□□ 0.92
SNX1-208ENST00000559844 MRIQ9BWK5 157 aa20.8■□□□□ 0.92
SNX1-208ENST00000559844 ELP1O95163 1332 aa20.8■□□□□ 0.92
SNX1-208ENST00000559844 MMP14P50281 582 aa20.79■□□□□ 0.92
SNX1-208ENST00000559844 RBM26Q5T8P6 1007 aaKnown RBP20.79■□□□□ 0.92
SNX1-208ENST00000559844 SAMD7Q7Z3H4 446 aa20.79■□□□□ 0.92
SNX1-208ENST00000559844 FERMT3Q86UX7 667 aa20.79■□□□□ 0.92
SNX1-208ENST00000559844 MIGA1Q8NAN2 632 aa20.79■□□□□ 0.92
SNX1-208ENST00000559844 FAM163AQ96GL9 167 aaPredicted RBP20.79■□□□□ 0.92
SNX1-208ENST00000559844 SCAND2PQ9GZW5 306 aaPredicted RBP20.79■□□□□ 0.92
SNX1-208ENST00000559844 GAKO14976 1311 aa20.79■□□□□ 0.92
SNX1-208ENST00000559844 TCHHQ07283 1943 aa20.79■□□□□ 0.92
SNX1-208ENST00000559844 MAGEB6P1A0A0J9YX57 407 aa20.79■□□□□ 0.92
SNX1-208ENST00000559844 EGFRP00533 1210 aa20.79■□□□□ 0.92
SNX1-208ENST00000559844 TDO2P48775 406 aa20.79■□□□□ 0.92
SNX1-208ENST00000559844 DLGAP5Q15398 846 aa20.79■□□□□ 0.92
SNX1-208ENST00000559844 ZNF526Q8TF50 670 aaPredicted RBP20.79■□□□□ 0.92
SNX1-208ENST00000559844 ZDHHC15Q96MV8 337 aa20.79■□□□□ 0.92
SNX1-208ENST00000559844 KRT23Q9C075 422 aa20.79■□□□□ 0.92
SNX1-208ENST00000559844 ANGEL1Q9UNK9 670 aaKnown RBP20.79■□□□□ 0.92
SNX1-208ENST00000559844 GOLGA8BA8MQT2 603 aa20.78■□□□□ 0.92
SNX1-208ENST00000559844 LETM1O95202 739 aaPredicted RBP20.78■□□□□ 0.92
SNX1-208ENST00000559844 BTDP43251 543 aa20.78■□□□□ 0.92
SNX1-208ENST00000559844 TBC1D10BQ4KMP7 808 aaPredicted RBP20.78■□□□□ 0.92
SNX1-208ENST00000559844 NOL10Q9BSC4 688 aaKnown RBP20.78■□□□□ 0.92
SNX1-208ENST00000559844 AATFQ9NY61 560 aaKnown RBP eCLIP20.78■□□□□ 0.92
SNX1-208ENST00000559844 HACL1Q9UJ83 578 aa20.78■□□□□ 0.92
SNX1-208ENST00000559844 CDK5RAP2Q96SN8 1893 aa20.78■□□□□ 0.92
SNX1-208ENST00000559844 RESTQ13127 1097 aa20.77■□□□□ 0.92
SNX1-208ENST00000559844 NCOA5Q9HCD5 579 aaKnown RBP20.77■□□□□ 0.92
SNX1-208ENST00000559844 GPHNQ9NQX3 736 aaPredicted RBP20.77■□□□□ 0.92
SNX1-208ENST00000559844 GPR75-ASB3A0A0A6YYF3 556 aa20.77■□□□□ 0.92
SNX1-208ENST00000559844 SH2B2O14492 632 aaPredicted RBP20.77■□□□□ 0.92
SNX1-208ENST00000559844 KIF4BQ2VIQ3 1234 aa20.77■□□□□ 0.92
SNX1-208ENST00000559844 AKNAD1Q5T1N1 836 aa20.77■□□□□ 0.92
SNX1-208ENST00000559844 CYB5R4Q7L1T6 521 aa20.77■□□□□ 0.92
SNX1-208ENST00000559844 PRMT6Q96LA8 375 aaPredicted RBP20.77■□□□□ 0.92
SNX1-208ENST00000559844 SYCE3A1L190 88 aa20.76■□□□□ 0.91
SNX1-208ENST00000559844 IQCA1LA6NCM1 817 aa20.76■□□□□ 0.91
SNX1-208ENST00000559844 SPDYE2BA6NHP3 402 aa20.76■□□□□ 0.91
SNX1-208ENST00000559844 B4E1Z4 1266 aa20.76■□□□□ 0.91
SNX1-208ENST00000559844 SPDYE6P0CI01 402 aa20.76■□□□□ 0.91
SNX1-208ENST00000559844 CCDC183Q5T5S1 534 aa20.76■□□□□ 0.91
SNX1-208ENST00000559844 APOBEC3HQ6NTF7 200 aaKnown RBP20.76■□□□□ 0.91
SNX1-208ENST00000559844 TRPM4Q8TD43 1214 aa20.76■□□□□ 0.91
SNX1-208ENST00000559844 PANK2Q9BZ23 570 aa20.76■□□□□ 0.91
SNX1-208ENST00000559844 RNF41Q9H4P4 317 aaPredicted RBP20.76■□□□□ 0.91
SNX1-208ENST00000559844 ADARB2Q9NS39 739 aaKnown RBP20.76■□□□□ 0.91
SNX1-208ENST00000559844 NEDD4P46934 1319 aa20.76■□□□□ 0.91
SNX1-208ENST00000559844 PRKAB2O43741 272 aa20.76■□□□□ 0.91
SNX1-208ENST00000559844 BAG3O95817 575 aa20.76■□□□□ 0.91
SNX1-208ENST00000559844 DYNLL1P63167 89 aaKnown RBP20.76■□□□□ 0.91
SNX1-208ENST00000559844 MFSD6Q6ZSS7 791 aa20.76■□□□□ 0.91
SNX1-208ENST00000559844 MTMR14Q8NCE2 650 aa20.76■□□□□ 0.91
SNX1-208ENST00000559844 RGS22Q8NE09 1264 aa20.76■□□□□ 0.91
SNX1-208ENST00000559844 STAG1Q8WVM7 1258 aa20.76■□□□□ 0.91
SNX1-208ENST00000559844 HPS5Q9UPZ3 1129 aa20.76■□□□□ 0.91
SNX1-208ENST00000559844 POTECB2RU33 542 aa20.75■□□□□ 0.91
SNX1-208ENST00000559844 WNT10BO00744 389 aa20.75■□□□□ 0.91
SNX1-208ENST00000559844 EPHX2P34913 555 aa20.75■□□□□ 0.91
SNX1-208ENST00000559844 NASPP49321 788 aaPredicted RBP20.75■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms