RNA–Protein interactions for RNA: ENST00000558218.5

USP3-207, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 717 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-207ENST00000558218 TBC1D12O60347 775 aa12.39□□□□□ -0.43
USP3-207ENST00000558218 HMMRO75330 724 aa12.39□□□□□ -0.43
USP3-207ENST00000558218 MCAMP43121 646 aa12.39□□□□□ -0.43
USP3-207ENST00000558218 RGS3P49796 1198 aa12.39□□□□□ -0.43
USP3-207ENST00000558218 PPIL2Q13356 520 aa12.39□□□□□ -0.43
USP3-207ENST00000558218 TTC39AQ5SRH9 613 aa12.39□□□□□ -0.43
USP3-207ENST00000558218 NOL9Q5SY16 702 aaKnown RBP12.39□□□□□ -0.43
USP3-207ENST00000558218 MIGA2Q7L4E1 593 aa12.39□□□□□ -0.43
USP3-207ENST00000558218 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.39□□□□□ -0.43
USP3-207ENST00000558218 PTPN18Q99952 460 aa12.39□□□□□ -0.43
USP3-207ENST00000558218 C1orf115Q9H7X2 142 aa12.39□□□□□ -0.43
USP3-207ENST00000558218 ZBTB40Q9NUA8 1239 aa12.39□□□□□ -0.43
USP3-207ENST00000558218 RYDENQ9NUL5 291 aaKnown RBP12.39□□□□□ -0.43
USP3-207ENST00000558218 SNCAIPQ9Y6H5 919 aa12.39□□□□□ -0.43
USP3-207ENST00000558218 AK9Q5TCS8 1911 aa12.39□□□□□ -0.43
USP3-207ENST00000558218 BAG3O95817 575 aa12.38□□□□□ -0.43
USP3-207ENST00000558218 BTDP43251 543 aa12.38□□□□□ -0.43
USP3-207ENST00000558218 RHBDL3P58872 404 aa12.38□□□□□ -0.43
USP3-207ENST00000558218 PPP4CP60510 307 aa12.38□□□□□ -0.43
USP3-207ENST00000558218 SNAPC2Q13487 334 aa12.38□□□□□ -0.43
USP3-207ENST00000558218 ARHGEF6Q15052 776 aa12.38□□□□□ -0.43
USP3-207ENST00000558218 KHSRPQ92945 711 aaKnown RBP eCLIP12.38□□□□□ -0.435e-8■□□□□ 8.5
USP3-207ENST00000558218 ZKSCAN4Q969J2 545 aaPredicted RBP12.38□□□□□ -0.43
USP3-207ENST00000558218 DBNDD2Q9BQY9 259 aa12.38□□□□□ -0.43
USP3-207ENST00000558218 RAI14Q9P0K7 980 aa12.38□□□□□ -0.43
USP3-207ENST00000558218 CCL15-CCL14A0A0B4J2E2 113 aa12.37□□□□□ -0.43
USP3-207ENST00000558218 EMP3P54852 163 aa12.37□□□□□ -0.43
USP3-207ENST00000558218 CCL15Q16663 113 aa12.37□□□□□ -0.43
USP3-207ENST00000558218 TBC1D9Q6ZT07 1266 aa12.37□□□□□ -0.43
USP3-207ENST00000558218 CERS3Q8IU89 383 aa12.37□□□□□ -0.43
USP3-207ENST00000558218 ZNF384Q8TF68 577 aa12.37□□□□□ -0.43
USP3-207ENST00000558218 BRI3BPQ8WY22 251 aa12.37□□□□□ -0.43
USP3-207ENST00000558218 EAF2Q96CJ1 260 aaPredicted RBP12.37□□□□□ -0.43
USP3-207ENST00000558218 ERO1AQ96HE7 468 aa12.37□□□□□ -0.43
USP3-207ENST00000558218 NOL10Q9BSC4 688 aaKnown RBP12.37□□□□□ -0.43
USP3-207ENST00000558218 ZFYVE28Q9HCC9 887 aa12.37□□□□□ -0.43
USP3-207ENST00000558218 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.37□□□□□ -0.43
USP3-207ENST00000558218 OTOFQ9HC10 1997 aa12.37□□□□□ -0.43
USP3-207ENST00000558218 RFX7Q2KHR2 1363 aa12.36□□□□□ -0.43
USP3-207ENST00000558218 ATRNL1Q5VV63 1379 aa12.36□□□□□ -0.43
USP3-207ENST00000558218 PHF20L1A8MW92 1017 aa12.36□□□□□ -0.43
USP3-207ENST00000558218 CXCL11O14625 94 aa12.36□□□□□ -0.43
USP3-207ENST00000558218 IRF6O14896 467 aa12.36□□□□□ -0.43
USP3-207ENST00000558218 CTNND1O60716 968 aaKnown RBP12.36□□□□□ -0.43
USP3-207ENST00000558218 RAB11FIP3O75154 756 aa12.36□□□□□ -0.43
USP3-207ENST00000558218 INPP5BP32019 993 aa12.36□□□□□ -0.43
USP3-207ENST00000558218 CRHR2Q13324 411 aa12.36□□□□□ -0.43
USP3-207ENST00000558218 NAA16Q6N069 864 aaPredicted RBP12.36□□□□□ -0.43
USP3-207ENST00000558218 FBXO46Q6PJ61 603 aaPredicted RBP12.36□□□□□ -0.43
USP3-207ENST00000558218 PI16Q6UXB8 463 aa12.36□□□□□ -0.43
USP3-207ENST00000558218 ZSCAN29Q8IWY8 852 aaPredicted RBP12.36□□□□□ -0.43
USP3-207ENST00000558218 ZFPM1Q8IX07 1006 aa12.36□□□□□ -0.43
USP3-207ENST00000558218 R3HDMLQ9H3Y0 253 aa12.36□□□□□ -0.43
USP3-207ENST00000558218 DBNLQ9UJU6 430 aaKnown RBP12.36□□□□□ -0.43
USP3-207ENST00000558218 KCNH4Q9UQ05 1017 aa12.36□□□□□ -0.43
USP3-207ENST00000558218 COL2A1P02458 1487 aaPredicted RBP12.35□□□□□ -0.43
USP3-207ENST00000558218 CYP2E1P05181 493 aaPredicted RBP12.35□□□□□ -0.43
USP3-207ENST00000558218 SP3Q02447 781 aa12.35□□□□□ -0.43
USP3-207ENST00000558218 SH3BP5LQ7L8J4 393 aa12.35□□□□□ -0.43
USP3-207ENST00000558218 CLASRPQ8N2M8 674 aaKnown RBP12.35□□□□□ -0.43
USP3-207ENST00000558218 RHPN1Q8TCX5 695 aa12.35□□□□□ -0.43
USP3-207ENST00000558218 KIF1BPQ96EK5 621 aa12.35□□□□□ -0.43
USP3-207ENST00000558218 CCDC8Q9H0W5 538 aaPredicted RBP12.35□□□□□ -0.43
USP3-207ENST00000558218 DHX36Q9H2U1 1008 aaKnown RBP12.35□□□□□ -0.43
USP3-207ENST00000558218 COG6Q9Y2V7 657 aa12.35□□□□□ -0.43
USP3-207ENST00000558218 FAM205CA6NFA0 338 aa12.34□□□□□ -0.43
USP3-207ENST00000558218 DDTLA6NHG4 134 aaPredicted RBP12.34□□□□□ -0.43
USP3-207ENST00000558218 TLR2O60603 784 aa12.34□□□□□ -0.43
USP3-207ENST00000558218 TAF1CQ15572 869 aaPredicted RBP12.34□□□□□ -0.43
USP3-207ENST00000558218 ARSIQ5FYB1 569 aa12.34□□□□□ -0.43
USP3-207ENST00000558218 ANKRD23Q86SG2 305 aa12.34□□□□□ -0.43
USP3-207ENST00000558218 FOXP4Q8IVH2 680 aaPredicted RBP12.34□□□□□ -0.43
USP3-207ENST00000558218 SCYL3Q8IZE3 742 aa12.34□□□□□ -0.43
USP3-207ENST00000558218 FAM43AQ8N2R8 423 aa12.34□□□□□ -0.43
USP3-207ENST00000558218 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.34□□□□□ -0.43
USP3-207ENST00000558218 TBC1D2Q9BYX2 928 aa12.34□□□□□ -0.43
USP3-207ENST00000558218 DDX4Q9NQI0 724 aaKnown RBP12.34□□□□□ -0.43
USP3-207ENST00000558218 PICK1Q9NRD5 415 aa12.34□□□□□ -0.43
USP3-207ENST00000558218 SNRKQ9NRH2 765 aa12.34□□□□□ -0.43
USP3-207ENST00000558218 HERC5Q9UII4 1024 aaKnown RBP12.34□□□□□ -0.43
USP3-207ENST00000558218 EXOC6BQ9Y2D4 811 aa12.34□□□□□ -0.43
USP3-207ENST00000558218 GNRH1P01148 92 aa12.33□□□□□ -0.44
USP3-207ENST00000558218 ZAP70P43403 619 aa12.33□□□□□ -0.44
USP3-207ENST00000558218 PICALMQ13492 652 aa12.33□□□□□ -0.44
USP3-207ENST00000558218 DSG2Q14126 1118 aa12.33□□□□□ -0.44
USP3-207ENST00000558218 TTF1Q15361 905 aaPredicted RBP12.33□□□□□ -0.44
USP3-207ENST00000558218 FASTKD5Q7L8L6 764 aaKnown RBP12.33□□□□□ -0.44
USP3-207ENST00000558218 AACSQ86V21 672 aa12.33□□□□□ -0.44
USP3-207ENST00000558218 SIRT2Q8IXJ6 389 aa12.33□□□□□ -0.44
USP3-207ENST00000558218 OSBPL5Q9H0X9 879 aaPredicted RBP12.33□□□□□ -0.44
USP3-207ENST00000558218 PI4KBQ9UBF8 816 aa12.33□□□□□ -0.44
USP3-207ENST00000558218 HPS5Q9UPZ3 1129 aa12.33□□□□□ -0.44
USP3-207ENST00000558218 BTBD19C9JJ37 291 aa12.32□□□□□ -0.44
USP3-207ENST00000558218 PTPRAP18433 802 aa12.32□□□□□ -0.44
USP3-207ENST00000558218 MLLT1Q03111 559 aaPredicted RBP12.32□□□□□ -0.44
USP3-207ENST00000558218 MAP3K12Q12852 859 aa12.32□□□□□ -0.44
USP3-207ENST00000558218 TEX11Q8IYF3 940 aa12.32□□□□□ -0.44
USP3-207ENST00000558218 GINM1Q9NU53 330 aa12.32□□□□□ -0.44
USP3-207ENST00000558218 SLC45A1Q9Y2W3 748 aa12.32□□□□□ -0.44
USP3-207ENST00000558218 AFG3L2Q9Y4W6 797 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 91.2 ms